RNA–Protein interactions for RNA: ENST00000423214.1

COL18A1-205, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 5

Gene COL18A1, Length 839 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-205ENST00000423214 CHD2O14647 1828 aaKnown RBP24.86■■□□□ 1.57
COL18A1-205ENST00000423214 ROCK1Q13464 1354 aa24.85■■□□□ 1.57
COL18A1-205ENST00000423214 ROBO1Q9Y6N7 1651 aa24.82■■□□□ 1.56
COL18A1-205ENST00000423214 BCANQ96GW7 911 aa24.82■■□□□ 1.56
COL18A1-205ENST00000423214 SLC26A8Q96RN1 970 aa24.82■■□□□ 1.56
COL18A1-205ENST00000423214 TMEM94Q12767 1356 aa24.81■■□□□ 1.56
COL18A1-205ENST00000423214 ZFYVE9O95405 1425 aa24.81■■□□□ 1.56
COL18A1-205ENST00000423214 PHF23Q9BUL5 403 aaPredicted RBP24.81■■□□□ 1.56
COL18A1-205ENST00000423214 RIMS2Q9UQ26 1411 aa24.79■■□□□ 1.56
COL18A1-205ENST00000423214 SPHKAPQ2M3C7 1700 aa24.79■■□□□ 1.56
COL18A1-205ENST00000423214 PPP1R15AO75807 674 aaPredicted RBP24.79■■□□□ 1.56
COL18A1-205ENST00000423214 KCNA6P17658 529 aa24.79■■□□□ 1.56
COL18A1-205ENST00000423214 PLEKHG1Q9ULL1 1385 aa24.78■■□□□ 1.56
COL18A1-205ENST00000423214 DIP2AQ14689 1571 aa24.76■■□□□ 1.55
COL18A1-205ENST00000423214 PROSER2Q86WR7 435 aaPredicted RBP24.75■■□□□ 1.55
COL18A1-205ENST00000423214 CHGAP10645 457 aaKnown RBP24.74■■□□□ 1.55
COL18A1-205ENST00000423214 ITGAEP38570 1179 aa24.74■■□□□ 1.55
COL18A1-205ENST00000423214 HDGFP51858 240 aaKnown RBP24.73■■□□□ 1.55
COL18A1-205ENST00000423214 FAM135BQ49AJ0 1406 aa24.72■■□□□ 1.55
COL18A1-205ENST00000423214 MSH6P52701 1360 aa24.72■■□□□ 1.55
COL18A1-205ENST00000423214 NUP155O75694 1391 aa24.71■■□□□ 1.55
COL18A1-205ENST00000423214 PHLPP1O60346 1717 aa24.71■■□□□ 1.55
COL18A1-205ENST00000423214 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.69■■□□□ 1.54
COL18A1-205ENST00000423214 RBM33Q96EV2 1170 aaKnown RBP24.68■■□□□ 1.54
COL18A1-205ENST00000423214 PPARGC1BQ86YN6 1023 aaKnown RBP24.67■■□□□ 1.54
COL18A1-205ENST00000423214 TRPM2O94759 1503 aa24.66■■□□□ 1.54
COL18A1-205ENST00000423214 KIF1BO60333 1816 aa24.63■■□□□ 1.53
COL18A1-205ENST00000423214 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.63■■□□□ 1.53
COL18A1-205ENST00000423214 ADAMTS13Q76LX8 1427 aa24.62■■□□□ 1.53
COL18A1-205ENST00000423214 NUTM2DQ5VT03 806 aaPredicted RBP24.61■■□□□ 1.53
COL18A1-205ENST00000423214 TBX22Q9Y458 520 aa24.6■■□□□ 1.53
COL18A1-205ENST00000423214 NRXN3Q9Y4C0 1643 aa24.6■■□□□ 1.53
COL18A1-205ENST00000423214 PIK3R4Q99570 1358 aa24.59■■□□□ 1.53
COL18A1-205ENST00000423214 CLTCL1P53675 1640 aa24.59■■□□□ 1.53
COL18A1-205ENST00000423214 NCOA3Q9Y6Q9 1424 aa24.58■■□□□ 1.53
COL18A1-205ENST00000423214 C14orf37Q86TY3 774 aa24.57■■□□□ 1.52
COL18A1-205ENST00000423214 RRBP1Q9P2E9 1410 aaKnown RBP24.57■■□□□ 1.52
COL18A1-205ENST00000423214 SETBP1Q9Y6X0 1596 aa24.57■■□□□ 1.52
COL18A1-205ENST00000423214 XRN1Q8IZH2 1706 aaKnown RBP24.57■■□□□ 1.52
COL18A1-205ENST00000423214 COL16A1Q07092 1604 aaPredicted RBP24.56■■□□□ 1.52
COL18A1-205ENST00000423214 SLAIN2Q9P270 581 aa24.54■■□□□ 1.52
COL18A1-205ENST00000423214 NEXMIFQ5QGS0 1516 aa24.51■■□□□ 1.51
COL18A1-205ENST00000423214 ZNF326Q5BKZ1 582 aaKnown RBP24.5■■□□□ 1.51
COL18A1-205ENST00000423214 NAIPQ13075 1403 aa24.5■■□□□ 1.51
COL18A1-205ENST00000423214 AHDC1Q5TGY3 1603 aaPredicted RBP24.5■■□□□ 1.51
COL18A1-205ENST00000423214 SHPRHQ149N8 1683 aa24.49■■□□□ 1.51
COL18A1-205ENST00000423214 PTPRUQ92729 1446 aa24.48■■□□□ 1.51
COL18A1-205ENST00000423214 JCADQ9P266 1359 aa24.48■■□□□ 1.51
COL18A1-205ENST00000423214 CADPS2Q86UW7 1296 aa24.47■■□□□ 1.51
COL18A1-205ENST00000423214 ATF3P18847 181 aa24.46■■□□□ 1.51
COL18A1-205ENST00000423214 RGS17Q9UGC6 210 aaPredicted RBP24.46■■□□□ 1.51
COL18A1-205ENST00000423214 NALCNQ8IZF0 1738 aa24.45■■□□□ 1.5
COL18A1-205ENST00000423214 AMOTL2Q9Y2J4 779 aa24.45■■□□□ 1.5
COL18A1-205ENST00000423214 DCCP43146 1447 aa24.44■■□□□ 1.5
COL18A1-205ENST00000423214 SETD1AO15047 1707 aaKnown RBP24.44■■□□□ 1.5
COL18A1-205ENST00000423214 C19orf44Q9H6X5 657 aa24.44■■□□□ 1.5
COL18A1-205ENST00000423214 HFM1A2PYH4 1435 aa24.42■■□□□ 1.5
COL18A1-205ENST00000423214 PPLO60437 1756 aa24.42■■□□□ 1.5
COL18A1-205ENST00000423214 NHSL1Q5SYE7 1610 aa24.41■■□□□ 1.5
COL18A1-205ENST00000423214 ASXL1Q8IXJ9 1541 aa24.39■■□□□ 1.49
COL18A1-205ENST00000423214 TRIM52Q96A61 297 aa24.37■■□□□ 1.49
COL18A1-205ENST00000423214 METP08581 1390 aa24.37■■□□□ 1.49
COL18A1-205ENST00000423214 LRP6O75581 1613 aa24.35■■□□□ 1.49
COL18A1-205ENST00000423214 POTEAQ6S8J7 498 aa24.35■■□□□ 1.49
COL18A1-205ENST00000423214 ADGRL3Q9HAR2 1447 aa24.35■■□□□ 1.49
COL18A1-205ENST00000423214 SPATA31A6Q5VVP1 1343 aa24.35■■□□□ 1.49
COL18A1-205ENST00000423214 MST1RQ04912 1400 aa24.33■■□□□ 1.49
COL18A1-205ENST00000423214 MEX3CQ5U5Q3 659 aaKnown RBP24.32■■□□□ 1.48
COL18A1-205ENST00000423214 BRINP3Q76B58 766 aa24.32■■□□□ 1.48
COL18A1-205ENST00000423214 SLC4A1APQ9BWU0 796 aaKnown RBP24.3■■□□□ 1.48
COL18A1-205ENST00000423214 PTCH1Q13635 1447 aa24.29■■□□□ 1.48
COL18A1-205ENST00000423214 IFT172Q9UG01 1749 aa24.28■■□□□ 1.48
COL18A1-205ENST00000423214 VGFO15240 615 aaPredicted RBP24.26■■□□□ 1.47
COL18A1-205ENST00000423214 SETD5Q9C0A6 1442 aa24.24■■□□□ 1.47
COL18A1-205ENST00000423214 RPGRIP1LQ68CZ1 1315 aa24.23■■□□□ 1.47
COL18A1-205ENST00000423214 LAMC1P11047 1609 aa24.22■■□□□ 1.47
COL18A1-205ENST00000423214 PRAG1Q86YV5 1406 aa24.21■■□□□ 1.47
COL18A1-205ENST00000423214 ZNF772Q68DY9 489 aaPredicted RBP24.21■■□□□ 1.47
COL18A1-205ENST00000423214 CCDC144AA2RUR9 1427 aa24.2■■□□□ 1.46
COL18A1-205ENST00000423214 NUTM2BA6NNL0 878 aaPredicted RBP24.19■■□□□ 1.46
COL18A1-205ENST00000423214 NUTM2EB1AL46 878 aaPredicted RBP24.19■■□□□ 1.46
COL18A1-205ENST00000423214 NUTM2AQ8IVF1 878 aaPredicted RBP24.19■■□□□ 1.46
COL18A1-205ENST00000423214 C1orf167Q5SNV9 1468 aa24.19■■□□□ 1.46
COL18A1-205ENST00000423214 ROBO2Q9HCK4 1378 aa24.18■■□□□ 1.46
COL18A1-205ENST00000423214 KNDC1Q76NI1 1749 aa24.18■■□□□ 1.46
COL18A1-205ENST00000423214 CDC42BPGQ6DT37 1551 aa24.16■■□□□ 1.46
COL18A1-205ENST00000423214 FOXD1Q16676 465 aa24.15■■□□□ 1.46
COL18A1-205ENST00000423214 LRRC59Q96AG4 307 aaKnown RBP24.15■■□□□ 1.46
COL18A1-205ENST00000423214 DDX17Q92841 729 aaKnown RBP24.13■■□□□ 1.45
COL18A1-205ENST00000423214 PNPLA6Q8IY17 1366 aa24.13■■□□□ 1.45
COL18A1-205ENST00000423214 SPATA31E1Q6ZUB1 1445 aa24.1■■□□□ 1.45
COL18A1-205ENST00000423214 AFF2P51816 1311 aa24.1■■□□□ 1.45
COL18A1-205ENST00000423214 ANKRD30BQ9BXX2 1392 aa24.08■■□□□ 1.45
COL18A1-205ENST00000423214 COL22A1Q8NFW1 1626 aaPredicted RBP24.08■■□□□ 1.45
COL18A1-205ENST00000423214 CDK12Q9NYV4 1490 aaPredicted RBP24.07■■□□□ 1.44
COL18A1-205ENST00000423214 MARF1Q9Y4F3 1742 aaKnown RBP24.07■■□□□ 1.44
COL18A1-205ENST00000423214 RXRBP28702 533 aa24.06■■□□□ 1.44
COL18A1-205ENST00000423214 RGL3Q3MIN7 710 aa24.06■■□□□ 1.44
COL18A1-205ENST00000423214 MPHOSPH9Q99550 1183 aa24.06■■□□□ 1.44
COL18A1-205ENST00000423214 ADGRF5Q8IZF2 1346 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms