RNA–Protein interactions for RNA: ENST00000423161.3

SREBF1-206, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 3

Gene SREBF1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-206	ENST00000423161	ZFYVE9	O95405	1425 aa		28.3	■■■□□ 2.12
SREBF1-206	ENST00000423161	NWD1	Q149M9	1564 aa		28.28	■■■□□ 2.12
SREBF1-206	ENST00000423161	SOCS7	O14512	581 aa		28.28	■■■□□ 2.12
SREBF1-206	ENST00000423161	RIMS2	Q9UQ26	1411 aa		28.27	■■■□□ 2.12
SREBF1-206	ENST00000423161	KCNA6	P17658	529 aa		28.27	■■■□□ 2.12
SREBF1-206	ENST00000423161	BCAN	Q96GW7	911 aa		28.26	■■■□□ 2.11
SREBF1-206	ENST00000423161	SENP3	Q9H4L4	574 aa	Predicted RBP	28.26	■■■□□ 2.11
SREBF1-206	ENST00000423161	NUP155	O75694	1391 aa		28.25	■■■□□ 2.11
SREBF1-206	ENST00000423161	TMEM94	Q12767	1356 aa		28.25	■■■□□ 2.11
SREBF1-206	ENST00000423161	PLEKHG1	Q9ULL1	1385 aa		28.24	■■■□□ 2.11
SREBF1-206	ENST00000423161	NKTR	P30414	1462 aa	Known RBP	28.24	■■■□□ 2.11
SREBF1-206	ENST00000423161	CHD2	O14647	1828 aa	Known RBP	28.24	■■■□□ 2.11
SREBF1-206	ENST00000423161	PPP1R15A	O75807	674 aa	Predicted RBP	28.23	■■■□□ 2.11
SREBF1-206	ENST00000423161	CHGA	P10645	457 aa	Known RBP	28.22	■■■□□ 2.11
SREBF1-206	ENST00000423161	HDGF	P51858	240 aa	Known RBP	28.21	■■■□□ 2.11
SREBF1-206	ENST00000423161	PROSER2	Q86WR7	435 aa	Predicted RBP	28.21	■■■□□ 2.11
SREBF1-206	ENST00000423161	SPHKAP	Q2M3C7	1700 aa		28.19	■■■□□ 2.1
SREBF1-206	ENST00000423161	RRBP1	Q9P2E9	1410 aa	Known RBP	28.17	■■■□□ 2.1
SREBF1-206	ENST00000423161	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	28.16	■■■□□ 2.1
SREBF1-206	ENST00000423161	RBM33	Q96EV2	1170 aa	Known RBP	28.16	■■■□□ 2.1
SREBF1-206	ENST00000423161	ROBO1	Q9Y6N7	1651 aa		28.13	■■■□□ 2.09
SREBF1-206	ENST00000423161	DIP2A	Q14689	1571 aa		28.13	■■■□□ 2.09
SREBF1-206	ENST00000423161	FAM135B	Q49AJ0	1406 aa		28.13	■■■□□ 2.09
SREBF1-206	ENST00000423161	NUTM2D	Q5VT03	806 aa	Predicted RBP	28.11	■■■□□ 2.09
SREBF1-206	ENST00000423161	TBX22	Q9Y458	520 aa		28.1	■■■□□ 2.09
SREBF1-206	ENST00000423161	MSH6	P52701	1360 aa		28.1	■■■□□ 2.09
SREBF1-206	ENST00000423161	ADAMTS13	Q76LX8	1427 aa		28.09	■■■□□ 2.09
SREBF1-206	ENST00000423161	PHF23	Q9BUL5	403 aa	Predicted RBP	28.09	■■■□□ 2.09
SREBF1-206	ENST00000423161	NAIP	Q13075	1403 aa		28.05	■■■□□ 2.08
SREBF1-206	ENST00000423161	TRPM2	O94759	1503 aa		28.04	■■■□□ 2.08
SREBF1-206	ENST00000423161	CLTCL1	P53675	1640 aa		28.03	■■■□□ 2.08
SREBF1-206	ENST00000423161	PIK3R4	Q99570	1358 aa		28.02	■■■□□ 2.08
SREBF1-206	ENST00000423161	KIF1B	O60333	1816 aa		28.01	■■■□□ 2.07
SREBF1-206	ENST00000423161	NRXN3	Q9Y4C0	1643 aa		28	■■■□□ 2.07
SREBF1-206	ENST00000423161	NCOA3	Q9Y6Q9	1424 aa		28	■■■□□ 2.07
SREBF1-206	ENST00000423161	PHLPP1	O60346	1717 aa		27.99	■■■□□ 2.07
SREBF1-206	ENST00000423161	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	27.98	■■■□□ 2.07
SREBF1-206	ENST00000423161	SETBP1	Q9Y6X0	1596 aa		27.98	■■■□□ 2.07
SREBF1-206	ENST00000423161	SLAIN2	Q9P270	581 aa		27.97	■■■□□ 2.07
SREBF1-206	ENST00000423161	ZNF326	Q5BKZ1	582 aa	Known RBP	27.96	■■■□□ 2.07
SREBF1-206	ENST00000423161	C14orf37	Q86TY3	774 aa		27.96	■■■□□ 2.07
SREBF1-206	ENST00000423161	HFM1	A2PYH4	1435 aa		27.95	■■■□□ 2.07
SREBF1-206	ENST00000423161	PTPRU	Q92729	1446 aa		27.94	■■■□□ 2.06
SREBF1-206	ENST00000423161	XRN1	Q8IZH2	1706 aa	Known RBP	27.94	■■■□□ 2.06
SREBF1-206	ENST00000423161	NEXMIF	Q5QGS0	1516 aa		27.92	■■■□□ 2.06
SREBF1-206	ENST00000423161	AMOTL2	Q9Y2J4	779 aa		27.91	■■■□□ 2.06
SREBF1-206	ENST00000423161	TRIM52	Q96A61	297 aa		27.9	■■■□□ 2.06
SREBF1-206	ENST00000423161	C19orf44	Q9H6X5	657 aa		27.87	■■■□□ 2.05
SREBF1-206	ENST00000423161	COL16A1	Q07092	1604 aa	Predicted RBP	27.87	■■■□□ 2.05
SREBF1-206	ENST00000423161	CADPS2	Q86UW7	1296 aa		27.86	■■■□□ 2.05
SREBF1-206	ENST00000423161	ATF3	P18847	181 aa		27.85	■■■□□ 2.05
SREBF1-206	ENST00000423161	RGS17	Q9UGC6	210 aa	Predicted RBP	27.84	■■■□□ 2.05
SREBF1-206	ENST00000423161	MET	P08581	1390 aa		27.83	■■■□□ 2.05
SREBF1-206	ENST00000423161	SLC4A1AP	Q9BWU0	796 aa	Known RBP	27.82	■■■□□ 2.04
SREBF1-206	ENST00000423161	JCAD	Q9P266	1359 aa		27.82	■■■□□ 2.04
SREBF1-206	ENST00000423161	AHDC1	Q5TGY3	1603 aa	Predicted RBP	27.81	■■■□□ 2.04
SREBF1-206	ENST00000423161	DCC	P43146	1447 aa		27.81	■■■□□ 2.04
SREBF1-206	ENST00000423161	PPL	O60437	1756 aa		27.78	■■■□□ 2.04
SREBF1-206	ENST00000423161	SETD1A	O15047	1707 aa	Known RBP	27.78	■■■□□ 2.04
SREBF1-206	ENST00000423161	NALCN	Q8IZF0	1738 aa		27.77	■■■□□ 2.04
SREBF1-206	ENST00000423161	SHPRH	Q149N8	1683 aa		27.75	■■■□□ 2.03
SREBF1-206	ENST00000423161	VGF	O15240	615 aa	Predicted RBP	27.72	■■■□□ 2.03
SREBF1-206	ENST00000423161	BRINP3	Q76B58	766 aa		27.72	■■■□□ 2.03
SREBF1-206	ENST00000423161	ADGRL3	Q9HAR2	1447 aa		27.72	■■■□□ 2.03
SREBF1-206	ENST00000423161	MST1R	Q04912	1400 aa		27.71	■■■□□ 2.03
SREBF1-206	ENST00000423161	ASXL1	Q8IXJ9	1541 aa		27.71	■■■□□ 2.03
SREBF1-206	ENST00000423161	POTEA	Q6S8J7	498 aa		27.7	■■■□□ 2.02
SREBF1-206	ENST00000423161	NHSL1	Q5SYE7	1610 aa		27.7	■■■□□ 2.02
SREBF1-206	ENST00000423161	RPGRIP1L	Q68CZ1	1315 aa		27.69	■■■□□ 2.02
SREBF1-206	ENST00000423161	FOXD1	Q16676	465 aa		27.68	■■■□□ 2.02
SREBF1-206	ENST00000423161	LRP6	O75581	1613 aa		27.67	■■■□□ 2.02
SREBF1-206	ENST00000423161	PTCH1	Q13635	1447 aa		27.67	■■■□□ 2.02
SREBF1-206	ENST00000423161	SPATA31A6	Q5VVP1	1343 aa		27.67	■■■□□ 2.02
SREBF1-206	ENST00000423161	CCDC144A	A2RUR9	1427 aa		27.64	■■■□□ 2.02
SREBF1-206	ENST00000423161	IFT172	Q9UG01	1749 aa		27.63	■■■□□ 2.01
SREBF1-206	ENST00000423161	PRAG1	Q86YV5	1406 aa		27.61	■■■□□ 2.01
SREBF1-206	ENST00000423161	ROBO2	Q9HCK4	1378 aa		27.6	■■■□□ 2.01
SREBF1-206	ENST00000423161	MEX3C	Q5U5Q3	659 aa	Known RBP	27.6	■■■□□ 2.01
SREBF1-206	ENST00000423161	MPHOSPH9	Q99550	1183 aa		27.59	■■■□□ 2.01
SREBF1-206	ENST00000423161	SETD5	Q9C0A6	1442 aa		27.58	■■■□□ 2.01
SREBF1-206	ENST00000423161	SPATA31E1	Q6ZUB1	1445 aa		27.57	■■■□□ 2
SREBF1-206	ENST00000423161	C1orf167	Q5SNV9	1468 aa		27.56	■■■□□ 2
SREBF1-206	ENST00000423161	RGL3	Q3MIN7	710 aa		27.54	■■■□□ 2
SREBF1-206	ENST00000423161	ADGRF5	Q8IZF2	1346 aa		27.53	■■■□□ 2
SREBF1-206	ENST00000423161	LAMC1	P11047	1609 aa		27.52	■■■□□ 2
SREBF1-206	ENST00000423161	NUTM2B	A6NNL0	878 aa	Predicted RBP	27.52	■■■□□ 2
SREBF1-206	ENST00000423161	NUTM2E	B1AL46	878 aa	Predicted RBP	27.52	■■■□□ 2
SREBF1-206	ENST00000423161	NUTM2A	Q8IVF1	878 aa	Predicted RBP	27.52	■■■□□ 2
SREBF1-206	ENST00000423161	DDX17	Q92841	729 aa	Known RBP	27.52	■■■□□ 2
SREBF1-206	ENST00000423161	ANKRD30B	Q9BXX2	1392 aa		27.51	■■□□□ 1.99
SREBF1-206	ENST00000423161	LRRC59	Q96AG4	307 aa	Known RBP	27.51	■■□□□ 1.99
SREBF1-206	ENST00000423161	ZNF772	Q68DY9	489 aa	Predicted RBP	27.49	■■□□□ 1.99
SREBF1-206	ENST00000423161	ACIN1	Q9UKV3	1341 aa	Known RBP	27.48	■■□□□ 1.99
SREBF1-206	ENST00000423161	KNDC1	Q76NI1	1749 aa		27.48	■■□□□ 1.99
SREBF1-206	ENST00000423161	CDC42BPG	Q6DT37	1551 aa		27.48	■■□□□ 1.99
SREBF1-206	ENST00000423161	PNPLA6	Q8IY17	1366 aa		27.48	■■□□□ 1.99
SREBF1-206	ENST00000423161	PIK3C2G	O75747	1445 aa		27.45	■■□□□ 1.98
SREBF1-206	ENST00000423161	ORAI2	Q96SN7	254 aa		27.45	■■□□□ 1.98
SREBF1-206	ENST00000423161	TECPR2	O15040	1411 aa		27.43	■■□□□ 1.98
SREBF1-206	ENST00000423161	STK26	Q9P289	416 aa		27.42	■■□□□ 1.98

Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms