RNA–Protein interactions for RNA: ENST00000417664.6

SSBP3-205, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 1,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-205ENST00000417664 PREX1Q8TCU6 1659 aa23.2■■□□□ 1.3
SSBP3-205ENST00000417664 PPLO60437 1756 aa23.19■■□□□ 1.3
SSBP3-205ENST00000417664 EIF3AQ14152 1382 aaKnown RBP23.18■■□□□ 1.3
SSBP3-205ENST00000417664 SLC24A1O60721 1099 aa23.18■■□□□ 1.3
SSBP3-205ENST00000417664 CHGAP10645 457 aaKnown RBP23.18■■□□□ 1.3
SSBP3-205ENST00000417664 TESK2Q96S53 571 aa23.18■■□□□ 1.3
SSBP3-205ENST00000417664 ADGRF5Q8IZF2 1346 aa23.17■■□□□ 1.3
SSBP3-205ENST00000417664 TMF1P82094 1093 aa23.15■■□□□ 1.3
SSBP3-205ENST00000417664 PRKRIP1Q9H875 184 aaPredicted RBP23.15■■□□□ 1.3
SSBP3-205ENST00000417664 ERVK-7P63135 1459 aa23.15■■□□□ 1.3
SSBP3-205ENST00000417664 SETBP1Q9Y6X0 1596 aa23.14■■□□□ 1.3
SSBP3-205ENST00000417664 IDI1Q13907 227 aa23.14■■□□□ 1.29
SSBP3-205ENST00000417664 PIK3C2GO75747 1445 aa23.14■■□□□ 1.29
SSBP3-205ENST00000417664 VGFO15240 615 aaPredicted RBP23.13■■□□□ 1.29
SSBP3-205ENST00000417664 ZFYVE9O95405 1425 aa23.12■■□□□ 1.29
SSBP3-205ENST00000417664 POLR3GLQ9BT43 218 aa23.12■■□□□ 1.29
SSBP3-205ENST00000417664 CLTCQ00610 1675 aaKnown RBP23.11■■□□□ 1.29
SSBP3-205ENST00000417664 CDCA8Q53HL2 280 aa23.1■■□□□ 1.29
SSBP3-205ENST00000417664 CFAP70Q5T0N1 1121 aa23.1■■□□□ 1.29
SSBP3-205ENST00000417664 NEXMIFQ5QGS0 1516 aa23.1■■□□□ 1.29
SSBP3-205ENST00000417664 SPATA31D1Q6ZQQ2 1576 aa23.1■■□□□ 1.29
SSBP3-205ENST00000417664 C14orf93Q9H972 538 aaKnown RBP23.09■■□□□ 1.29
SSBP3-205ENST00000417664 TMEM131LA2VDJ0 1609 aa23.08■■□□□ 1.29
SSBP3-205ENST00000417664 KTN1Q86UP2 1357 aaKnown RBP23.07■■□□□ 1.28
SSBP3-205ENST00000417664 ESF1Q9H501 851 aaKnown RBP23.07■■□□□ 1.28
SSBP3-205ENST00000417664 DISP3Q9P2K9 1392 aa23.07■■□□□ 1.28
SSBP3-205ENST00000417664 FBXO31Q5XUX0 539 aaPredicted RBP23.04■■□□□ 1.28
SSBP3-205ENST00000417664 SBNO2Q9Y2G9 1366 aa23.03■■□□□ 1.28
SSBP3-205ENST00000417664 MLECQ14165 292 aa23.03■■□□□ 1.28
SSBP3-205ENST00000417664 MYO3AQ8NEV4 1616 aa23.02■■□□□ 1.28
SSBP3-205ENST00000417664 ZMYM3Q14202 1370 aa23.01■■□□□ 1.27
SSBP3-205ENST00000417664 ADGRB1O14514 1584 aa23.01■■□□□ 1.27
SSBP3-205ENST00000417664 TRHP20396 242 aaPredicted RBP23■■□□□ 1.27
SSBP3-205ENST00000417664 MYO5BQ9ULV0 1848 aa22.97■■□□□ 1.27
SSBP3-205ENST00000417664 RALBP1Q15311 655 aa22.97■■□□□ 1.27
SSBP3-205ENST00000417664 STAG3Q9UJ98 1225 aa22.97■■□□□ 1.27
SSBP3-205ENST00000417664 PER1O15534 1290 aaPredicted RBP22.94■■□□□ 1.26
SSBP3-205ENST00000417664 CENPJQ9HC77 1338 aaPredicted RBP22.94■■□□□ 1.26
SSBP3-205ENST00000417664 A2ML1A8K2U0 1454 aa22.94■■□□□ 1.26
SSBP3-205ENST00000417664 DNAJC5Q9H3Z4 198 aa22.93■■□□□ 1.26
SSBP3-205ENST00000417664 MRS2Q9HD23 443 aa22.93■■□□□ 1.26
SSBP3-205ENST00000417664 KDM5AP29375 1690 aaKnown RBP22.92■■□□□ 1.26
SSBP3-205ENST00000417664 SCAF1Q9H7N4 1312 aaKnown RBP22.9■■□□□ 1.26
SSBP3-205ENST00000417664 PANK3Q9H999 370 aa22.9■■□□□ 1.26
SSBP3-205ENST00000417664 TNRQ92752 1358 aa22.89■■□□□ 1.25
SSBP3-205ENST00000417664 TRAK1Q9UPV9 953 aa22.88■■□□□ 1.25
SSBP3-205ENST00000417664 MYBBP1AQ9BQG0 1328 aaKnown RBP22.88■■□□□ 1.25
SSBP3-205ENST00000417664 NUTM2DQ5VT03 806 aaPredicted RBP22.87■■□□□ 1.25
SSBP3-205ENST00000417664 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.87■■□□□ 1.25
SSBP3-205ENST00000417664 PARD3Q8TEW0 1356 aa22.87■■□□□ 1.25
SSBP3-205ENST00000417664 TMEM132EQ6IEE7 984 aa22.87■■□□□ 1.25
SSBP3-205ENST00000417664 PUS7Q96PZ0 661 aaKnown RBP22.87■■□□□ 1.25
SSBP3-205ENST00000417664 HDGFP51858 240 aaKnown RBP22.86■■□□□ 1.25
SSBP3-205ENST00000417664 CCDC184Q52MB2 194 aa22.86■■□□□ 1.25
SSBP3-205ENST00000417664 RIMS2Q9UQ26 1411 aa22.86■■□□□ 1.25
SSBP3-205ENST00000417664 BRD4O60885 1362 aaPredicted RBP22.85■■□□□ 1.25
SSBP3-205ENST00000417664 QRICH2Q9H0J4 1663 aa22.85■■□□□ 1.25
SSBP3-205ENST00000417664 GTF3C3Q9Y5Q9 886 aa22.84■■□□□ 1.25
SSBP3-205ENST00000417664 ARHGEF28Q8N1W1 1705 aaKnown RBP22.83■■□□□ 1.25
SSBP3-205ENST00000417664 MYOM1P52179 1685 aa22.83■■□□□ 1.25
SSBP3-205ENST00000417664 ALKQ9UM73 1620 aa22.83■■□□□ 1.24
SSBP3-205ENST00000417664 NLRP1Q9C000 1473 aa22.83■■□□□ 1.24
SSBP3-205ENST00000417664 ASXL1Q8IXJ9 1541 aa22.82■■□□□ 1.24
SSBP3-205ENST00000417664 KNSTRNQ9Y448 316 aa22.81■■□□□ 1.24
SSBP3-205ENST00000417664 NPC1L1Q9UHC9 1359 aa22.81■■□□□ 1.24
SSBP3-205ENST00000417664 NLRP13Q86W25 1043 aa22.8■■□□□ 1.24
SSBP3-205ENST00000417664 TMC1Q8TDI8 760 aa22.8■■□□□ 1.24
SSBP3-205ENST00000417664 YTHDC2Q9H6S0 1430 aaKnown RBP22.79■■□□□ 1.24
SSBP3-205ENST00000417664 HNRNPUQ00839 825 aaKnown RBP eCLIP22.78■■□□□ 1.243e-6■□□□□ 10.4
SSBP3-205ENST00000417664 EVC2Q86UK5 1308 aa22.77■■□□□ 1.24
SSBP3-205ENST00000417664 FAM9BQ8IZU0 186 aa22.77■■□□□ 1.24
SSBP3-205ENST00000417664 FER1L4A9Z1Z3 1794 aa22.76■■□□□ 1.23
SSBP3-205ENST00000417664 UBR1Q8IWV7 1749 aa22.75■■□□□ 1.23
SSBP3-205ENST00000417664 CNGB1Q14028 1251 aaPredicted RBP22.74■■□□□ 1.23
SSBP3-205ENST00000417664 TMEM2Q9UHN6 1383 aa22.74■■□□□ 1.23
SSBP3-205ENST00000417664 PTPRMP28827 1452 aa22.74■■□□□ 1.23
SSBP3-205ENST00000417664 DLC1Q96QB1 1528 aa22.74■■□□□ 1.23
SSBP3-205ENST00000417664 AMER1Q5JTC6 1135 aaPredicted RBP22.74■■□□□ 1.23
SSBP3-205ENST00000417664 PNISRQ8TF01 805 aaKnown RBP22.74■■□□□ 1.23
SSBP3-205ENST00000417664 C3P01024 1663 aa22.74■■□□□ 1.23
SSBP3-205ENST00000417664 CC2D1BQ5T0F9 858 aaKnown RBP22.71■■□□□ 1.23
SSBP3-205ENST00000417664 LRPPRCP42704 1394 aaKnown RBP22.71■■□□□ 1.23
SSBP3-205ENST00000417664 SETD1AO15047 1707 aaKnown RBP22.71■■□□□ 1.23
SSBP3-205ENST00000417664 NINLQ9Y2I6 1382 aa22.7■■□□□ 1.22
SSBP3-205ENST00000417664 TULP4Q9NRJ4 1543 aa22.69■■□□□ 1.22
SSBP3-205ENST00000417664 ABCC11Q96J66 1382 aa22.69■■□□□ 1.22
SSBP3-205ENST00000417664 ZBED9Q6R2W3 1325 aa22.69■■□□□ 1.22
SSBP3-205ENST00000417664 STK26Q9P289 416 aa22.69■■□□□ 1.22
SSBP3-205ENST00000417664 NRXN3Q9Y4C0 1643 aa22.68■■□□□ 1.22
SSBP3-205ENST00000417664 POGKQ9P215 609 aa22.68■■□□□ 1.22
SSBP3-205ENST00000417664 INSRP06213 1382 aa22.67■■□□□ 1.22
SSBP3-205ENST00000417664 PRAM1Q96QH2 718 aa22.66■■□□□ 1.22
SSBP3-205ENST00000417664 SIRT1Q96EB6 747 aa22.65■■□□□ 1.22
SSBP3-205ENST00000417664 CEBPAP49715 358 aaPredicted RBP22.65■■□□□ 1.22
SSBP3-205ENST00000417664 ATAD2Q6PL18 1390 aa22.64■■□□□ 1.22
SSBP3-205ENST00000417664 SLIT1O75093 1534 aa22.64■■□□□ 1.21
SSBP3-205ENST00000417664 PLEKHG1Q9ULL1 1385 aa22.64■■□□□ 1.21
SSBP3-205ENST00000417664 CARD14Q9BXL6 1004 aa22.62■■□□□ 1.21
SSBP3-205ENST00000417664 ARHGAP23Q9P227 1491 aa22.62■■□□□ 1.21
SSBP3-205ENST00000417664 TECPR2O15040 1411 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms