RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 PPP2R1AP30153 589 aa13.16□□□□□ -0.3
SS18-203ENST00000415083 UHRF1BP1LA0JNW5 1464 aa13.15□□□□□ -0.3
SS18-203ENST00000415083 DEKP35659 375 aaKnown RBP13.15□□□□□ -0.3
SS18-203ENST00000415083 BACH2Q9BYV9 841 aa13.15□□□□□ -0.3
SS18-203ENST00000415083 ABCA6Q8N139 1617 aa13.15□□□□□ -0.3
SS18-203ENST00000415083 PDE4AP27815 886 aa13.14□□□□□ -0.31
SS18-203ENST00000415083 TMF1P82094 1093 aa13.14□□□□□ -0.31
SS18-203ENST00000415083 SCAPERQ9BY12 1400 aa13.14□□□□□ -0.31
SS18-203ENST00000415083 ABCA9Q8IUA7 1624 aa13.14□□□□□ -0.31
SS18-203ENST00000415083 DUSP27Q5VZP5 1158 aa13.14□□□□□ -0.31
SS18-203ENST00000415083 SPINK5Q9NQ38 1064 aaPredicted RBP13.14□□□□□ -0.31
SS18-203ENST00000415083 KIAA1210Q9ULL0 1709 aa13.14□□□□□ -0.31
SS18-203ENST00000415083 KDM2BQ8NHM5 1336 aa13.13□□□□□ -0.31
SS18-203ENST00000415083 SCAF11Q99590 1463 aaKnown RBP13.12□□□□□ -0.31
SS18-203ENST00000415083 ASXL1Q8IXJ9 1541 aa13.12□□□□□ -0.31
SS18-203ENST00000415083 ERVK-7P63135 1459 aa13.11□□□□□ -0.31
SS18-203ENST00000415083 DMRT2Q9Y5R5 561 aa13.11□□□□□ -0.31
SS18-203ENST00000415083 RTEL1-TNFRSF6BF6WH68 1400 aa13.11□□□□□ -0.31
SS18-203ENST00000415083 MAP3K4Q9Y6R4 1608 aa13.11□□□□□ -0.31
SS18-203ENST00000415083 TCERG1O14776 1098 aaKnown RBP13.1□□□□□ -0.31
SS18-203ENST00000415083 KDM5AP29375 1690 aaKnown RBP13.1□□□□□ -0.31
SS18-203ENST00000415083 ARAP3Q8WWN8 1544 aa13.1□□□□□ -0.31
SS18-203ENST00000415083 ATP7AQ04656 1500 aa13.09□□□□□ -0.31
SS18-203ENST00000415083 EFCAB2Q5VUJ9 269 aa13.09□□□□□ -0.31
SS18-203ENST00000415083 TRMT2AQ8IZ69 625 aaKnown RBP13.09□□□□□ -0.31
SS18-203ENST00000415083 CARD14Q9BXL6 1004 aa13.09□□□□□ -0.31
SS18-203ENST00000415083 SHPRHQ149N8 1683 aa13.09□□□□□ -0.31
SS18-203ENST00000415083 PPRC1Q5VV67 1664 aaKnown RBP13.08□□□□□ -0.32
SS18-203ENST00000415083 NEURL4Q96JN8 1562 aa13.08□□□□□ -0.32
SS18-203ENST00000415083 PIK3C2GO75747 1445 aa13.08□□□□□ -0.32
SS18-203ENST00000415083 ANP32AP39687 249 aaKnown RBP13.07□□□□□ -0.32
SS18-203ENST00000415083 MYO3AQ8NEV4 1616 aa13.07□□□□□ -0.32
SS18-203ENST00000415083 KIDINS220Q9ULH0 1771 aa13.07□□□□□ -0.32
SS18-203ENST00000415083 ZC3H13Q5T200 1668 aaKnown RBP13.07□□□□□ -0.32
SS18-203ENST00000415083 SPAG9O60271 1321 aaKnown RBP13.07□□□□□ -0.32
SS18-203ENST00000415083 ADGRF5Q8IZF2 1346 aa13.07□□□□□ -0.32
SS18-203ENST00000415083 NPM2Q86SE8 214 aaKnown RBP13.07□□□□□ -0.32
SS18-203ENST00000415083 MS4A1P11836 297 aa13.06□□□□□ -0.32
SS18-203ENST00000415083 NRXN1Q9ULB1 1477 aa13.06□□□□□ -0.32
SS18-203ENST00000415083 CCDC146Q8IYE0 955 aa13.05□□□□□ -0.32
SS18-203ENST00000415083 ZBTB47Q9UFB7 747 aaPredicted RBP13.05□□□□□ -0.32
SS18-203ENST00000415083 KIF1BO60333 1816 aa13.05□□□□□ -0.32
SS18-203ENST00000415083 CFAP70Q5T0N1 1121 aa13.05□□□□□ -0.32
SS18-203ENST00000415083 SLFN5Q08AF3 891 aa13.04□□□□□ -0.32
SS18-203ENST00000415083 MYOM2P54296 1465 aa13.04□□□□□ -0.32
SS18-203ENST00000415083 NPC1L1Q9UHC9 1359 aa13.04□□□□□ -0.32
SS18-203ENST00000415083 EFCAB6Q5THR3 1501 aa13.04□□□□□ -0.32
SS18-203ENST00000415083 KNSTRNQ9Y448 316 aa13.03□□□□□ -0.32
SS18-203ENST00000415083 FANCAO15360 1455 aa13.03□□□□□ -0.32
SS18-203ENST00000415083 C8orf34Q49A92 452 aa13.01□□□□□ -0.33
SS18-203ENST00000415083 PPLO60437 1756 aa13.01□□□□□ -0.33
SS18-203ENST00000415083 CFAP65Q6ZU64 1925 aaKnown RBP13.01□□□□□ -0.33
SS18-203ENST00000415083 VIRMAQ69YN4 1812 aaKnown RBP13□□□□□ -0.33
SS18-203ENST00000415083 FRMPD1Q5SYB0 1578 aa13□□□□□ -0.33
SS18-203ENST00000415083 BCAR3O75815 825 aa13□□□□□ -0.33
SS18-203ENST00000415083 ADGRB3O60242 1522 aa13□□□□□ -0.33
SS18-203ENST00000415083 LAS1LQ9Y4W2 734 aaKnown RBP13□□□□□ -0.33
SS18-203ENST00000415083 SIGLEC1Q9BZZ2 1709 aa13□□□□□ -0.33
SS18-203ENST00000415083 ADGRB1O14514 1584 aa12.99□□□□□ -0.33
SS18-203ENST00000415083 APAF1O14727 1248 aa12.99□□□□□ -0.33
SS18-203ENST00000415083 GOLGA2Q08379 1002 aa12.99□□□□□ -0.33
SS18-203ENST00000415083 KIF3BO15066 747 aa12.98□□□□□ -0.33
SS18-203ENST00000415083 QRICH2Q9H0J4 1663 aa12.98□□□□□ -0.33
SS18-203ENST00000415083 MYT1LQ9UL68 1186 aa12.98□□□□□ -0.33
SS18-203ENST00000415083 ADGRL1O94910 1474 aa12.98□□□□□ -0.33
SS18-203ENST00000415083 LMTK2Q8IWU2 1503 aa12.97□□□□□ -0.33
SS18-203ENST00000415083 WDR43Q15061 677 aaKnown RBP eCLIP12.97□□□□□ -0.33
SS18-203ENST00000415083 NKTRP30414 1462 aaKnown RBP12.97□□□□□ -0.33
SS18-203ENST00000415083 SLC4A3P48751 1232 aa12.97□□□□□ -0.33
SS18-203ENST00000415083 IQSEC2Q5JU85 1478 aa12.96□□□□□ -0.33
SS18-203ENST00000415083 IGHDP01880 384 aa12.96□□□□□ -0.33
SS18-203ENST00000415083 SETBP1Q9Y6X0 1596 aa12.96□□□□□ -0.34
SS18-203ENST00000415083 NOS1P29475 1434 aa12.96□□□□□ -0.34
SS18-203ENST00000415083 CENPQQ7L2Z9 268 aaPredicted RBP12.94□□□□□ -0.34
SS18-203ENST00000415083 ZNF518AQ6AHZ1 1483 aa12.94□□□□□ -0.34
SS18-203ENST00000415083 USP19O94966 1318 aa12.94□□□□□ -0.34
SS18-203ENST00000415083 STAC3Q96MF2 364 aa12.94□□□□□ -0.34
SS18-203ENST00000415083 TNNQ9UQP3 1299 aa12.93□□□□□ -0.34
SS18-203ENST00000415083 NPATQ14207 1427 aa12.93□□□□□ -0.34
SS18-203ENST00000415083 EIF3AQ14152 1382 aaKnown RBP12.93□□□□□ -0.34
SS18-203ENST00000415083 SBNO2Q9Y2G9 1366 aa12.93□□□□□ -0.34
SS18-203ENST00000415083 ASXL2Q76L83 1435 aa12.93□□□□□ -0.34
SS18-203ENST00000415083 USP32Q8NFA0 1604 aa12.92□□□□□ -0.34
SS18-203ENST00000415083 CDCA8Q53HL2 280 aa12.92□□□□□ -0.34
SS18-203ENST00000415083 POLR3AO14802 1390 aaPredicted RBP12.92□□□□□ -0.34
SS18-203ENST00000415083 ARHGEF28Q8N1W1 1705 aaKnown RBP12.92□□□□□ -0.34
SS18-203ENST00000415083 TULP4Q9NRJ4 1543 aa12.91□□□□□ -0.34
SS18-203ENST00000415083 NLRP1Q9C000 1473 aa12.91□□□□□ -0.34
SS18-203ENST00000415083 NSD3Q9BZ95 1437 aa12.91□□□□□ -0.34
SS18-203ENST00000415083 WWC1Q8IX03 1113 aa12.91□□□□□ -0.34
SS18-203ENST00000415083 PHF23Q9BUL5 403 aaPredicted RBP12.91□□□□□ -0.34
SS18-203ENST00000415083 SLC12A5Q9H2X9 1139 aa12.9□□□□□ -0.34
SS18-203ENST00000415083 KANK1Q14678 1352 aa12.9□□□□□ -0.34
SS18-203ENST00000415083 NEFMP07197 916 aa12.9□□□□□ -0.34
SS18-203ENST00000415083 RTL5Q5HYW3 569 aaPredicted RBP12.9□□□□□ -0.34
SS18-203ENST00000415083 SEC24BO95487 1268 aa12.9□□□□□ -0.35
SS18-203ENST00000415083 HECW2Q9P2P5 1572 aa12.9□□□□□ -0.35
SS18-203ENST00000415083 PIK3C2BO00750 1634 aa12.89□□□□□ -0.35
SS18-203ENST00000415083 TMEM132EQ6IEE7 984 aa12.89□□□□□ -0.35
SS18-203ENST00000415083 GLI2P10070 1586 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms