RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 RIPK4P57078 832 aa21.44■■□□□ 1.02
PHRF1-202ENST00000413872 CENPQQ7L2Z9 268 aaPredicted RBP21.44■■□□□ 1.02
PHRF1-202ENST00000413872 ROCK1Q13464 1354 aa21.44■■□□□ 1.02
PHRF1-202ENST00000413872 GPRASP1Q5JY77 1395 aa21.44■■□□□ 1.02
PHRF1-202ENST00000413872 HSP90B1P14625 803 aaKnown RBP21.43■■□□□ 1.02
PHRF1-202ENST00000413872 MEX3CQ5U5Q3 659 aaKnown RBP21.43■■□□□ 1.02
PHRF1-202ENST00000413872 POGZQ7Z3K3 1410 aa21.43■■□□□ 1.02
PHRF1-202ENST00000413872 GNAI1P63096 354 aa21.42■■□□□ 1.02
PHRF1-202ENST00000413872 CSPP1Q1MSJ5 1256 aa21.42■■□□□ 1.02
PHRF1-202ENST00000413872 DDX19BQ9UMR2 479 aa21.41■■□□□ 1.02
PHRF1-202ENST00000413872 SCAPERQ9BY12 1400 aa21.41■■□□□ 1.02
PHRF1-202ENST00000413872 C9orf78Q9NZ63 289 aaPredicted RBP21.41■■□□□ 1.02
PHRF1-202ENST00000413872 ST18O60284 1047 aa21.41■■□□□ 1.02
PHRF1-202ENST00000413872 KIF7Q2M1P5 1343 aa21.4■■□□□ 1.02
PHRF1-202ENST00000413872 RBM19Q9Y4C8 960 aaKnown RBP21.4■■□□□ 1.02
PHRF1-202ENST00000413872 CLSTN1O94985 981 aa21.39■■□□□ 1.01
PHRF1-202ENST00000413872 CHAF1AQ13111 956 aaPredicted RBP21.39■■□□□ 1.01
PHRF1-202ENST00000413872 ABCA10Q8WWZ4 1543 aa21.39■■□□□ 1.01
PHRF1-202ENST00000413872 EIF2S2P20042 333 aaKnown RBP21.39■■□□□ 1.01
PHRF1-202ENST00000413872 TMEM132EQ6IEE7 984 aa21.38■■□□□ 1.01
PHRF1-202ENST00000413872 NLRP6P59044 892 aa21.38■■□□□ 1.01
PHRF1-202ENST00000413872 DRC7Q8IY82 874 aa21.37■■□□□ 1.01
PHRF1-202ENST00000413872 BCL2L13Q9BXK5 485 aa21.37■■□□□ 1.01
PHRF1-202ENST00000413872 CABP2Q9NPB3 220 aa21.37■■□□□ 1.01
PHRF1-202ENST00000413872 RRP1P56182 461 aaKnown RBP21.37■■□□□ 1.01
PHRF1-202ENST00000413872 TOMM22Q9NS69 142 aa21.37■■□□□ 1.01
PHRF1-202ENST00000413872 KIAA1107Q9UPP5 1409 aa21.37■■□□□ 1.01
PHRF1-202ENST00000413872 CFAP70Q5T0N1 1121 aa21.37■■□□□ 1.01
PHRF1-202ENST00000413872 KIF16BQ96L93 1317 aa21.36■■□□□ 1.01
PHRF1-202ENST00000413872 RPGRIP1LQ68CZ1 1315 aa21.36■■□□□ 1.01
PHRF1-202ENST00000413872 PROSER2Q86WR7 435 aaPredicted RBP21.35■■□□□ 1.01
PHRF1-202ENST00000413872 ANKRD45Q5TZF3 282 aa21.35■■□□□ 1.01
PHRF1-202ENST00000413872 GGNBP2Q9H3C7 697 aa21.35■■□□□ 1.01
PHRF1-202ENST00000413872 NLRP2Q9NX02 1062 aa21.34■■□□□ 1.01
PHRF1-202ENST00000413872 CNTLNQ9NXG0 1405 aa21.34■■□□□ 1.01
PHRF1-202ENST00000413872 RUFY2Q8WXA3 655 aa21.34■■□□□ 1.01
PHRF1-202ENST00000413872 RTN4Q9NQC3 1192 aaKnown RBP21.34■■□□□ 1.01
PHRF1-202ENST00000413872 MSH5O43196 834 aa21.33■■□□□ 1.01
PHRF1-202ENST00000413872 TPM4P67936 248 aa21.33■■□□□ 1.01
PHRF1-202ENST00000413872 SYTL4Q96C24 671 aaPredicted RBP21.33■■□□□ 1.01
PHRF1-202ENST00000413872 TSPYL4Q9UJ04 414 aa21.33■■□□□ 1.01
PHRF1-202ENST00000413872 WASHC2AQ641Q2 1341 aa21.33■■□□□ 1.01
PHRF1-202ENST00000413872 DZIP1LQ8IYY4 767 aaKnown RBP21.33■■□□□ 1.01
PHRF1-202ENST00000413872 AAMPQ13685 434 aa21.33■■□□□ 1
PHRF1-202ENST00000413872 FKBP5Q13451 457 aaPredicted RBP21.32■■□□□ 1
PHRF1-202ENST00000413872 NOL10Q9BSC4 688 aaKnown RBP21.32■■□□□ 1
PHRF1-202ENST00000413872 SLKQ9H2G2 1235 aaPredicted RBP21.32■■□□□ 1
PHRF1-202ENST00000413872 MSNP26038 577 aaKnown RBP21.32■■□□□ 1
PHRF1-202ENST00000413872 HSP90AB4PQ58FF6 505 aa21.32■■□□□ 1
PHRF1-202ENST00000413872 RILPL2Q969X0 211 aa21.31■■□□□ 1
PHRF1-202ENST00000413872 ZNF692Q9BU19 519 aaPredicted RBP21.31■■□□□ 1
PHRF1-202ENST00000413872 BRD4O60885 1362 aaPredicted RBP21.3■■□□□ 1
PHRF1-202ENST00000413872 AMOTL1Q8IY63 956 aa21.3■■□□□ 1
PHRF1-202ENST00000413872 COG6Q9Y2V7 657 aa21.3■■□□□ 1
PHRF1-202ENST00000413872 DIAPH3Q9NSV4 1193 aa21.3■■□□□ 1
PHRF1-202ENST00000413872 GAS2L2Q8NHY3 880 aa21.3■■□□□ 1
PHRF1-202ENST00000413872 TIAM1Q13009 1591 aa21.29■■□□□ 1
PHRF1-202ENST00000413872 IQGAP2Q13576 1575 aa21.29■■□□□ 1
PHRF1-202ENST00000413872 ANKRD30BQ9BXX2 1392 aa21.29■■□□□ 1
PHRF1-202ENST00000413872 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.29■■□□□ 12e-6■■■□□ 15.2
PHRF1-202ENST00000413872 ABTB2Q8N961 1025 aa21.29■■□□□ 1
PHRF1-202ENST00000413872 KIAA2012Q0VF49 1180 aa21.28■■□□□ 1
PHRF1-202ENST00000413872 ANKLE2Q86XL3 938 aa21.28■■□□□ 1
PHRF1-202ENST00000413872 PRAM1Q96QH2 718 aa21.28■■□□□ 1
PHRF1-202ENST00000413872 SUPT6HQ7KZ85 1726 aaKnown RBP21.28■■□□□ 1
PHRF1-202ENST00000413872 ESCO1Q5FWF5 840 aa21.28■■□□□ 1
PHRF1-202ENST00000413872 MAGI1Q96QZ7 1491 aaPredicted RBP21.27■■□□□ 1
PHRF1-202ENST00000413872 IFIT2P09913 472 aaKnown RBP21.27■■□□□ 1
PHRF1-202ENST00000413872 DAPK1P53355 1430 aa21.27■■□□□ 1
PHRF1-202ENST00000413872 G3BP1Q13283 466 aaKnown RBP eCLIP21.27■■□□□ 17e-7■■■■□ 25.3
PHRF1-202ENST00000413872 RASSF8Q8NHQ8 419 aa21.27■□□□□ 0.99
PHRF1-202ENST00000413872 HMOX1P09601 288 aa21.26■□□□□ 0.99
PHRF1-202ENST00000413872 REC8O95072 547 aa21.26■□□□□ 0.99
PHRF1-202ENST00000413872 FAM161AQ3B820 660 aa21.26■□□□□ 0.99
PHRF1-202ENST00000413872 CPLX2Q6PUV4 134 aaKnown RBP21.26■□□□□ 0.99
PHRF1-202ENST00000413872 EPRSP07814 1512 aaKnown RBP21.25■□□□□ 0.99
PHRF1-202ENST00000413872 CRBNQ96SW2 442 aa21.25■□□□□ 0.99
PHRF1-202ENST00000413872 RAPGEF3O95398 923 aa21.25■□□□□ 0.99
PHRF1-202ENST00000413872 CUL7Q14999 1698 aa21.25■□□□□ 0.99
PHRF1-202ENST00000413872 SMG6Q86US8 1419 aaKnown RBP21.25■□□□□ 0.99
PHRF1-202ENST00000413872 PLEKHO1Q53GL0 409 aaPredicted RBP21.25■□□□□ 0.99
PHRF1-202ENST00000413872 SYNE3Q6ZMZ3 975 aa21.25■□□□□ 0.99
PHRF1-202ENST00000413872 MTHFSP49914 203 aa21.24■□□□□ 0.99
PHRF1-202ENST00000413872 BICRAQ9NZM4 1560 aa21.24■□□□□ 0.99
PHRF1-202ENST00000413872 IPO9Q96P70 1041 aaKnown RBP21.24■□□□□ 0.99
PHRF1-202ENST00000413872 NAP1L5Q96NT1 182 aaPredicted RBP21.23■□□□□ 0.99
PHRF1-202ENST00000413872 PLIN1O60240 522 aa21.23■□□□□ 0.99
PHRF1-202ENST00000413872 AKAP17AQ02040 695 aaKnown RBP21.23■□□□□ 0.99
PHRF1-202ENST00000413872 ATP6V1DQ9Y5K8 247 aa21.23■□□□□ 0.99
PHRF1-202ENST00000413872 ZKSCAN1P17029 563 aaPredicted RBP21.23■□□□□ 0.99
PHRF1-202ENST00000413872 EXOC6Q8TAG9 804 aa21.22■□□□□ 0.99
PHRF1-202ENST00000413872 NUTM2GQ5VZR2 741 aa21.22■□□□□ 0.99
PHRF1-202ENST00000413872 VPS37DQ86XT2 251 aa21.22■□□□□ 0.99
PHRF1-202ENST00000413872 MARCH6O60337 910 aa21.21■□□□□ 0.99
PHRF1-202ENST00000413872 SF3A1Q15459 793 aaKnown RBP21.21■□□□□ 0.99
PHRF1-202ENST00000413872 NECTIN2Q92692 538 aa21.21■□□□□ 0.99
PHRF1-202ENST00000413872 RIC3Q7Z5B4 369 aa21.21■□□□□ 0.99
PHRF1-202ENST00000413872 PHF14O94880 888 aa21.21■□□□□ 0.99
PHRF1-202ENST00000413872 NOL8Q76FK4 1167 aaKnown RBP21.2■□□□□ 0.98
PHRF1-202ENST00000413872 CCDC141Q6ZP82 1450 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms