RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 PELP1Q8IZL8 1130 aaKnown RBP18.61■□□□□ 0.57
LIMS1-205ENST00000410093 ZMYM3Q14202 1370 aa18.59■□□□□ 0.57
LIMS1-205ENST00000410093 SETD1BQ9UPS6 1966 aaKnown RBP18.59■□□□□ 0.57
LIMS1-205ENST00000410093 WASHC2CQ9Y4E1 1318 aa18.58■□□□□ 0.57
LIMS1-205ENST00000410093 MYOM2P54296 1465 aa18.58■□□□□ 0.57
LIMS1-205ENST00000410093 IQGAP1P46940 1657 aa18.58■□□□□ 0.56
LIMS1-205ENST00000410093 PREX1Q8TCU6 1659 aa18.58■□□□□ 0.56
LIMS1-205ENST00000410093 C3P01024 1663 aa18.57■□□□□ 0.56
LIMS1-205ENST00000410093 ZC3H13Q5T200 1668 aaKnown RBP18.56■□□□□ 0.56
LIMS1-205ENST00000410093 IFT172Q9UG01 1749 aa18.55■□□□□ 0.56
LIMS1-205ENST00000410093 RALBP1Q15311 655 aa18.54■□□□□ 0.56
LIMS1-205ENST00000410093 MRS2Q9HD23 443 aa18.54■□□□□ 0.56
LIMS1-205ENST00000410093 MROH2AA6NES4 1674 aa18.54■□□□□ 0.56
LIMS1-205ENST00000410093 TMF1P82094 1093 aa18.53■□□□□ 0.56
LIMS1-205ENST00000410093 DMRT2Q9Y5R5 561 aa18.53■□□□□ 0.56
LIMS1-205ENST00000410093 CLTCQ00610 1675 aaKnown RBP18.53■□□□□ 0.56
LIMS1-205ENST00000410093 NPATQ14207 1427 aa18.52■□□□□ 0.56
LIMS1-205ENST00000410093 EIF3AQ14152 1382 aaKnown RBP18.52■□□□□ 0.56
LIMS1-205ENST00000410093 CDCA8Q53HL2 280 aa18.52■□□□□ 0.56
LIMS1-205ENST00000410093 SCAF11Q99590 1463 aaKnown RBP18.52■□□□□ 0.55
LIMS1-205ENST00000410093 HNRNPUQ00839 825 aaKnown RBP eCLIP18.51■□□□□ 0.55
LIMS1-205ENST00000410093 NBPF1Q3BBV0 1214 aa18.51■□□□□ 0.55
LIMS1-205ENST00000410093 NEFLP07196 543 aa18.5■□□□□ 0.55
LIMS1-205ENST00000410093 SUPT16HQ9Y5B9 1047 aaKnown RBP18.5■□□□□ 0.55
LIMS1-205ENST00000410093 TESK2Q96S53 571 aa18.49■□□□□ 0.55
LIMS1-205ENST00000410093 BRD4O60885 1362 aaPredicted RBP18.48■□□□□ 0.55
LIMS1-205ENST00000410093 ABCC3O15438 1527 aa18.48■□□□□ 0.55
LIMS1-205ENST00000410093 ADGRB3O60242 1522 aa18.48■□□□□ 0.55
LIMS1-205ENST00000410093 ZBED9Q6R2W3 1325 aa18.48■□□□□ 0.55
LIMS1-205ENST00000410093 NRXN1Q9ULB1 1477 aa18.48■□□□□ 0.55
LIMS1-205ENST00000410093 CAMSAP1Q5T5Y3 1602 aa18.48■□□□□ 0.55
LIMS1-205ENST00000410093 ARHGAP31Q2M1Z3 1444 aa18.48■□□□□ 0.55
LIMS1-205ENST00000410093 RPGRIP1LQ68CZ1 1315 aa18.47■□□□□ 0.55
LIMS1-205ENST00000410093 POLR3GLQ9BT43 218 aa18.47■□□□□ 0.55
LIMS1-205ENST00000410093 SETBP1Q9Y6X0 1596 aa18.46■□□□□ 0.55
LIMS1-205ENST00000410093 MYBBP1AQ9BQG0 1328 aaKnown RBP18.46■□□□□ 0.54
LIMS1-205ENST00000410093 ILDR1Q86SU0 546 aaPredicted RBP18.44■□□□□ 0.54
LIMS1-205ENST00000410093 PPLO60437 1756 aa18.43■□□□□ 0.54
LIMS1-205ENST00000410093 PIK3C2BO00750 1634 aa18.42■□□□□ 0.54
LIMS1-205ENST00000410093 INSRP06213 1382 aa18.42■□□□□ 0.54
LIMS1-205ENST00000410093 ERICH6BQ5W0A0 696 aa18.42■□□□□ 0.54
LIMS1-205ENST00000410093 NOS1P29475 1434 aa18.42■□□□□ 0.54
LIMS1-205ENST00000410093 SYNMO15061 1565 aa18.42■□□□□ 0.54
LIMS1-205ENST00000410093 MYO3AQ8NEV4 1616 aa18.41■□□□□ 0.54
LIMS1-205ENST00000410093 PARD3Q8TEW0 1356 aa18.41■□□□□ 0.54
LIMS1-205ENST00000410093 CCDC184Q52MB2 194 aa18.4■□□□□ 0.54
LIMS1-205ENST00000410093 FAM9BQ8IZU0 186 aa18.4■□□□□ 0.54
LIMS1-205ENST00000410093 DISP3Q9P2K9 1392 aa18.4■□□□□ 0.54
LIMS1-205ENST00000410093 FBXO31Q5XUX0 539 aaPredicted RBP18.39■□□□□ 0.54
LIMS1-205ENST00000410093 TMC1Q8TDI8 760 aa18.39■□□□□ 0.54
LIMS1-205ENST00000410093 TNRQ92752 1358 aa18.39■□□□□ 0.53
LIMS1-205ENST00000410093 SBNO2Q9Y2G9 1366 aa18.39■□□□□ 0.53
LIMS1-205ENST00000410093 PER1O15534 1290 aaPredicted RBP18.39■□□□□ 0.53
LIMS1-205ENST00000410093 KDM5AP29375 1690 aaKnown RBP18.38■□□□□ 0.53
LIMS1-205ENST00000410093 NLRP13Q86W25 1043 aa18.38■□□□□ 0.53
LIMS1-205ENST00000410093 UGGT1Q9NYU2 1555 aa18.38■□□□□ 0.53
LIMS1-205ENST00000410093 FBXO41Q8TF61 875 aa18.37■□□□□ 0.53
LIMS1-205ENST00000410093 PNISRQ8TF01 805 aaKnown RBP18.36■□□□□ 0.53
LIMS1-205ENST00000410093 LRPPRCP42704 1394 aaKnown RBP18.36■□□□□ 0.53
LIMS1-205ENST00000410093 CEP170BQ9Y4F5 1589 aaPredicted RBP18.36■□□□□ 0.53
LIMS1-205ENST00000410093 STRCQ7RTU9 1775 aa18.35■□□□□ 0.53
LIMS1-205ENST00000410093 SLC52A1Q9NWF4 448 aa18.34■□□□□ 0.53
LIMS1-205ENST00000410093 NPC1L1Q9UHC9 1359 aa18.34■□□□□ 0.53
LIMS1-205ENST00000410093 A2ML1A8K2U0 1454 aa18.33■□□□□ 0.53
LIMS1-205ENST00000410093 PIK3C2GO75747 1445 aa18.33■□□□□ 0.53
LIMS1-205ENST00000410093 CERKQ8TCT0 537 aa18.33■□□□□ 0.53
LIMS1-205ENST00000410093 ZFYVE9O95405 1425 aa18.33■□□□□ 0.52
LIMS1-205ENST00000410093 NCKAP5LQ9HCH0 1330 aa18.33■□□□□ 0.52
LIMS1-205ENST00000410093 FKBP8Q14318 412 aa18.33■□□□□ 0.52
LIMS1-205ENST00000410093 PHF23Q9BUL5 403 aaPredicted RBP18.33■□□□□ 0.52
LIMS1-205ENST00000410093 ZNF142P52746 1687 aaPredicted RBP18.32■□□□□ 0.52
LIMS1-205ENST00000410093 CFAP65Q6ZU64 1925 aaKnown RBP18.32■□□□□ 0.52
LIMS1-205ENST00000410093 THEMISQ8N1K5 641 aaPredicted RBP18.32■□□□□ 0.52
LIMS1-205ENST00000410093 PANK3Q9H999 370 aa18.31■□□□□ 0.52
LIMS1-205ENST00000410093 NLRP1Q9C000 1473 aa18.3■□□□□ 0.52
LIMS1-205ENST00000410093 SMG6Q86US8 1419 aaKnown RBP18.3■□□□□ 0.52
LIMS1-205ENST00000410093 ADGRF5Q8IZF2 1346 aa18.29■□□□□ 0.52
LIMS1-205ENST00000410093 VGFO15240 615 aaPredicted RBP18.29■□□□□ 0.52
LIMS1-205ENST00000410093 C14orf93Q9H972 538 aaKnown RBP18.29■□□□□ 0.52
LIMS1-205ENST00000410093 MYOM1P52179 1685 aa18.28■□□□□ 0.52
LIMS1-205ENST00000410093 PUS7Q96PZ0 661 aaKnown RBP18.28■□□□□ 0.52
LIMS1-205ENST00000410093 ASXL1Q8IXJ9 1541 aa18.27■□□□□ 0.52
LIMS1-205ENST00000410093 CFAP70Q5T0N1 1121 aa18.27■□□□□ 0.51
LIMS1-205ENST00000410093 ANKLE2Q86XL3 938 aa18.27■□□□□ 0.51
LIMS1-205ENST00000410093 KNSTRNQ9Y448 316 aa18.27■□□□□ 0.51
LIMS1-205ENST00000410093 NEXMIFQ5QGS0 1516 aa18.27■□□□□ 0.51
LIMS1-205ENST00000410093 ADGRB1O14514 1584 aa18.25■□□□□ 0.51
LIMS1-205ENST00000410093 ERVK-7P63135 1459 aa18.25■□□□□ 0.51
LIMS1-205ENST00000410093 CHGAP10645 457 aaKnown RBP18.23■□□□□ 0.51
LIMS1-205ENST00000410093 PDE3BQ13370 1112 aa18.23■□□□□ 0.51
LIMS1-205ENST00000410093 SPATA31D1Q6ZQQ2 1576 aa18.23■□□□□ 0.51
LIMS1-205ENST00000410093 QRICH2Q9H0J4 1663 aa18.23■□□□□ 0.51
LIMS1-205ENST00000410093 STAG3Q9UJ98 1225 aa18.23■□□□□ 0.51
LIMS1-205ENST00000410093 CENPJQ9HC77 1338 aaPredicted RBP18.22■□□□□ 0.51
LIMS1-205ENST00000410093 NUDCQ9Y266 331 aa18.22■□□□□ 0.51
LIMS1-205ENST00000410093 TMEM131LA2VDJ0 1609 aa18.22■□□□□ 0.51
LIMS1-205ENST00000410093 AMER1Q5JTC6 1135 aaPredicted RBP18.18■□□□□ 0.5
LIMS1-205ENST00000410093 BLMP54132 1417 aaPredicted RBP18.18■□□□□ 0.5
LIMS1-205ENST00000410093 ZNF335Q9H4Z2 1342 aaPredicted RBP18.17■□□□□ 0.5
LIMS1-205ENST00000410093 ARHGEF28Q8N1W1 1705 aaKnown RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms