RNA–Protein interactions for RNA: ENST00000403994.7

TPM1-207, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene TPM1, Length 1,049 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-207ENST00000403994 SCAF1Q9H7N4 1312 aaKnown RBP23.4■■□□□ 1.34
TPM1-207ENST00000403994 NKTRP30414 1462 aaKnown RBP23.39■■□□□ 1.34
TPM1-207ENST00000403994 PIP4K2BP78356 416 aa23.39■■□□□ 1.33
TPM1-207ENST00000403994 DISP3Q9P2K9 1392 aa23.39■■□□□ 1.33
TPM1-207ENST00000403994 PLEKHG1Q9ULL1 1385 aa23.39■■□□□ 1.33
TPM1-207ENST00000403994 HFM1A2PYH4 1435 aa23.37■■□□□ 1.33
TPM1-207ENST00000403994 SLC26A8Q96RN1 970 aa23.36■■□□□ 1.33
TPM1-207ENST00000403994 CHD2O14647 1828 aaKnown RBP23.35■■□□□ 1.33
TPM1-207ENST00000403994 DIP2AQ14689 1571 aa23.35■■□□□ 1.33
TPM1-207ENST00000403994 TRPM2O94759 1503 aa23.34■■□□□ 1.33
TPM1-207ENST00000403994 CLTCL1P53675 1640 aa23.34■■□□□ 1.33
TPM1-207ENST00000403994 HSPA1LP34931 641 aa23.33■■□□□ 1.33
TPM1-207ENST00000403994 PPP1R15AO75807 674 aaPredicted RBP23.32■■□□□ 1.32
TPM1-207ENST00000403994 TMEM94Q12767 1356 aa23.31■■□□□ 1.32
TPM1-207ENST00000403994 CHGAP10645 457 aaKnown RBP23.31■■□□□ 1.32
TPM1-207ENST00000403994 KCNA6P17658 529 aa23.3■■□□□ 1.32
TPM1-207ENST00000403994 MED1Q15648 1581 aaPredicted RBP23.29■■□□□ 1.32
TPM1-207ENST00000403994 NRXN3Q9Y4C0 1643 aa23.29■■□□□ 1.32
TPM1-207ENST00000403994 ADAMTS13Q76LX8 1427 aa23.28■■□□□ 1.32
TPM1-207ENST00000403994 SENP3Q9H4L4 574 aaPredicted RBP23.28■■□□□ 1.32
TPM1-207ENST00000403994 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.27■■□□□ 1.32
TPM1-207ENST00000403994 BCANQ96GW7 911 aa23.27■■□□□ 1.32
TPM1-207ENST00000403994 HDGFP51858 240 aaKnown RBP23.26■■□□□ 1.31
TPM1-207ENST00000403994 KIF1BO60333 1816 aa23.26■■□□□ 1.31
TPM1-207ENST00000403994 SETBP1Q9Y6X0 1596 aa23.25■■□□□ 1.31
TPM1-207ENST00000403994 NEXMIFQ5QGS0 1516 aa23.23■■□□□ 1.31
TPM1-207ENST00000403994 NUTM2DQ5VT03 806 aaPredicted RBP23.23■■□□□ 1.31
TPM1-207ENST00000403994 ROBO1Q9Y6N7 1651 aa23.22■■□□□ 1.31
TPM1-207ENST00000403994 PROSER2Q86WR7 435 aaPredicted RBP23.21■■□□□ 1.31
TPM1-207ENST00000403994 XRN1Q8IZH2 1706 aaKnown RBP23.21■■□□□ 1.31
TPM1-207ENST00000403994 TBX22Q9Y458 520 aa23.2■■□□□ 1.3
TPM1-207ENST00000403994 ILDR2Q71H61 639 aa23.19■■□□□ 1.3
TPM1-207ENST00000403994 RBM33Q96EV2 1170 aaKnown RBP23.19■■□□□ 1.3
TPM1-207ENST00000403994 PIK3R4Q99570 1358 aa23.18■■□□□ 1.3
TPM1-207ENST00000403994 FAM135BQ49AJ0 1406 aa23.16■■□□□ 1.3
TPM1-207ENST00000403994 MSH6P52701 1360 aa23.16■■□□□ 1.3
TPM1-207ENST00000403994 TRIM52Q96A61 297 aa23.15■■□□□ 1.3
TPM1-207ENST00000403994 PTPRUQ92729 1446 aa23.15■■□□□ 1.3
TPM1-207ENST00000403994 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.13■■□□□ 1.29
TPM1-207ENST00000403994 ZNF326Q5BKZ1 582 aaKnown RBP23.13■■□□□ 1.29
TPM1-207ENST00000403994 NCOA3Q9Y6Q9 1424 aa23.13■■□□□ 1.29
TPM1-207ENST00000403994 SETD1AO15047 1707 aaKnown RBP23.12■■□□□ 1.29
TPM1-207ENST00000403994 PPLO60437 1756 aa23.12■■□□□ 1.29
TPM1-207ENST00000403994 SLC4A1APQ9BWU0 796 aaKnown RBP23.11■■□□□ 1.29
TPM1-207ENST00000403994 PHLPP1O60346 1717 aa23.08■■□□□ 1.28
TPM1-207ENST00000403994 METP08581 1390 aa23.06■■□□□ 1.28
TPM1-207ENST00000403994 AMOTL2Q9Y2J4 779 aa23.04■■□□□ 1.28
TPM1-207ENST00000403994 NALCNQ8IZF0 1738 aa23.04■■□□□ 1.28
TPM1-207ENST00000403994 IFT172Q9UG01 1749 aa23.04■■□□□ 1.28
TPM1-207ENST00000403994 COL16A1Q07092 1604 aaPredicted RBP23.03■■□□□ 1.28
TPM1-207ENST00000403994 DCCP43146 1447 aa23.02■■□□□ 1.28
TPM1-207ENST00000403994 C14orf37Q86TY3 774 aa23.02■■□□□ 1.28
TPM1-207ENST00000403994 SLAIN2Q9P270 581 aa23.02■■□□□ 1.28
TPM1-207ENST00000403994 FOXD1Q16676 465 aa23.01■■□□□ 1.27
TPM1-207ENST00000403994 CCDC144AA2RUR9 1427 aa23■■□□□ 1.27
TPM1-207ENST00000403994 AHDC1Q5TGY3 1603 aaPredicted RBP23■■□□□ 1.27
TPM1-207ENST00000403994 SOCS7O14512 581 aa22.99■■□□□ 1.27
TPM1-207ENST00000403994 PTCH1Q13635 1447 aa22.98■■□□□ 1.27
TPM1-207ENST00000403994 SPATA31E1Q6ZUB1 1445 aa22.98■■□□□ 1.27
TPM1-207ENST00000403994 SETD5Q9C0A6 1442 aa22.98■■□□□ 1.27
TPM1-207ENST00000403994 C19orf44Q9H6X5 657 aa22.97■■□□□ 1.27
TPM1-207ENST00000403994 RPGRIP1LQ68CZ1 1315 aa22.97■■□□□ 1.27
TPM1-207ENST00000403994 PRAG1Q86YV5 1406 aa22.97■■□□□ 1.27
TPM1-207ENST00000403994 ADGRL3Q9HAR2 1447 aa22.97■■□□□ 1.27
TPM1-207ENST00000403994 CADPS2Q86UW7 1296 aa22.96■■□□□ 1.27
TPM1-207ENST00000403994 PHF23Q9BUL5 403 aaPredicted RBP22.96■■□□□ 1.27
TPM1-207ENST00000403994 MPHOSPH9Q99550 1183 aa22.95■■□□□ 1.26
TPM1-207ENST00000403994 VGFO15240 615 aaPredicted RBP22.94■■□□□ 1.26
TPM1-207ENST00000403994 ATF3P18847 181 aa22.94■■□□□ 1.26
TPM1-207ENST00000403994 ASXL1Q8IXJ9 1541 aa22.93■■□□□ 1.26
TPM1-207ENST00000403994 MST1RQ04912 1400 aa22.92■■□□□ 1.26
TPM1-207ENST00000403994 NHSL1Q5SYE7 1610 aa22.92■■□□□ 1.26
TPM1-207ENST00000403994 RAB3GAP2Q9H2M9 1393 aa22.91■■□□□ 1.26
TPM1-207ENST00000403994 SHPRHQ149N8 1683 aa22.91■■□□□ 1.26
TPM1-207ENST00000403994 JCADQ9P266 1359 aa22.89■■□□□ 1.26
TPM1-207ENST00000403994 ROBO2Q9HCK4 1378 aa22.89■■□□□ 1.25
TPM1-207ENST00000403994 ACIN1Q9UKV3 1341 aaKnown RBP22.88■■□□□ 1.25
TPM1-207ENST00000403994 KNDC1Q76NI1 1749 aa22.87■■□□□ 1.25
TPM1-207ENST00000403994 BRINP3Q76B58 766 aa22.86■■□□□ 1.25
TPM1-207ENST00000403994 ANKRD30BQ9BXX2 1392 aa22.86■■□□□ 1.25
TPM1-207ENST00000403994 PIK3C2GO75747 1445 aa22.85■■□□□ 1.25
TPM1-207ENST00000403994 ADGRF5Q8IZF2 1346 aa22.84■■□□□ 1.25
TPM1-207ENST00000403994 LRP6O75581 1613 aa22.83■■□□□ 1.25
TPM1-207ENST00000403994 CDC42BPGQ6DT37 1551 aa22.83■■□□□ 1.25
TPM1-207ENST00000403994 RGL3Q3MIN7 710 aa22.82■■□□□ 1.24
TPM1-207ENST00000403994 RGS17Q9UGC6 210 aaPredicted RBP22.82■■□□□ 1.24
TPM1-207ENST00000403994 LAMC1P11047 1609 aa22.82■■□□□ 1.24
TPM1-207ENST00000403994 TECPR2O15040 1411 aa22.82■■□□□ 1.24
TPM1-207ENST00000403994 MYOM2P54296 1465 aa22.81■■□□□ 1.24
TPM1-207ENST00000403994 NRXN1Q9ULB1 1477 aa22.8■■□□□ 1.24
TPM1-207ENST00000403994 C1orf167Q5SNV9 1468 aa22.79■■□□□ 1.24
TPM1-207ENST00000403994 SPATA31A6Q5VVP1 1343 aa22.76■■□□□ 1.23
TPM1-207ENST00000403994 LRPPRCP42704 1394 aaKnown RBP22.75■■□□□ 1.23
TPM1-207ENST00000403994 YTHDC2Q9H6S0 1430 aaKnown RBP22.71■■□□□ 1.23
TPM1-207ENST00000403994 POTEAQ6S8J7 498 aa22.7■■□□□ 1.22
TPM1-207ENST00000403994 ABCC11Q96J66 1382 aa22.7■■□□□ 1.22
TPM1-207ENST00000403994 FMN2Q9NZ56 1722 aa22.7■■□□□ 1.22
TPM1-207ENST00000403994 DDX17Q92841 729 aaKnown RBP22.69■■□□□ 1.22
TPM1-207ENST00000403994 PNPLA6Q8IY17 1366 aa22.67■■□□□ 1.22
TPM1-207ENST00000403994 PLEKHH1Q9ULM0 1364 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms