RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 LAS1LQ9Y4W2 734 aaKnown RBP10.82□□□□□ -0.68
PTPRD-204ENST00000397606 PRKRIP1Q9H875 184 aaPredicted RBP10.81□□□□□ -0.68
PTPRD-204ENST00000397606 CNTLNQ9NXG0 1405 aa10.81□□□□□ -0.68
PTPRD-204ENST00000397606 TTC37Q6PGP7 1564 aa10.81□□□□□ -0.68
PTPRD-204ENST00000397606 RTF1Q92541 710 aaKnown RBP10.8□□□□□ -0.68
PTPRD-204ENST00000397606 BCL11AQ9H165 835 aa10.8□□□□□ -0.68
PTPRD-204ENST00000397606 MYT1Q01538 1121 aa10.8□□□□□ -0.68
PTPRD-204ENST00000397606 ADGRF5Q8IZF2 1346 aa10.8□□□□□ -0.68
PTPRD-204ENST00000397606 WASHC2AQ641Q2 1341 aa10.79□□□□□ -0.68
PTPRD-204ENST00000397606 ZFYVE16Q7Z3T8 1539 aa10.79□□□□□ -0.68
PTPRD-204ENST00000397606 NOS1P29475 1434 aa10.79□□□□□ -0.68
PTPRD-204ENST00000397606 ZMYM3Q14202 1370 aa10.79□□□□□ -0.68
PTPRD-204ENST00000397606 CALD1Q05682 793 aaKnown RBP10.79□□□□□ -0.68
PTPRD-204ENST00000397606 PREX2Q70Z35 1606 aa10.78□□□□□ -0.68
PTPRD-204ENST00000397606 MAGI2Q86UL8 1455 aa10.78□□□□□ -0.68
PTPRD-204ENST00000397606 CDK19Q9BWU1 502 aa10.78□□□□□ -0.68
PTPRD-204ENST00000397606 ABCC1P33527 1531 aa10.77□□□□□ -0.68
PTPRD-204ENST00000397606 SHROOM2Q13796 1616 aa10.77□□□□□ -0.68
PTPRD-204ENST00000397606 SAMD9LQ8IVG5 1584 aa10.77□□□□□ -0.68
PTPRD-204ENST00000397606 ARAP3Q8WWN8 1544 aa10.77□□□□□ -0.69
PTPRD-204ENST00000397606 C14orf93Q9H972 538 aaKnown RBP10.77□□□□□ -0.69
PTPRD-204ENST00000397606 GPRASP1Q5JY77 1395 aa10.77□□□□□ -0.69
PTPRD-204ENST00000397606 CCDC136Q96JN2 1154 aa10.77□□□□□ -0.69
PTPRD-204ENST00000397606 MLH3Q9UHC1 1453 aa10.76□□□□□ -0.69
PTPRD-204ENST00000397606 ATAD2Q6PL18 1390 aa10.76□□□□□ -0.69
PTPRD-204ENST00000397606 ZNF692Q9BU19 519 aaPredicted RBP10.76□□□□□ -0.69
PTPRD-204ENST00000397606 ESCO1Q5FWF5 840 aa10.75□□□□□ -0.69
PTPRD-204ENST00000397606 ADCY10Q96PN6 1610 aa10.75□□□□□ -0.69
PTPRD-204ENST00000397606 MYH16Q9H6N6 1097 aa10.75□□□□□ -0.69
PTPRD-204ENST00000397606 PZPP20742 1482 aa10.75□□□□□ -0.69
PTPRD-204ENST00000397606 LTV1Q96GA3 475 aaPredicted RBP10.74□□□□□ -0.69
PTPRD-204ENST00000397606 DMRT2Q9Y5R5 561 aa10.74□□□□□ -0.69
PTPRD-204ENST00000397606 YEATS2Q9ULM3 1422 aa10.74□□□□□ -0.69
PTPRD-204ENST00000397606 LMOD3Q0VAK6 560 aa10.74□□□□□ -0.69
PTPRD-204ENST00000397606 SLC12A5Q9H2X9 1139 aa10.74□□□□□ -0.69
PTPRD-204ENST00000397606 AMOTL2Q9Y2J4 779 aa10.74□□□□□ -0.69
PTPRD-204ENST00000397606 MS4A1P11836 297 aa10.73□□□□□ -0.69
PTPRD-204ENST00000397606 FTSJ3Q8IY81 847 aaKnown RBP10.73□□□□□ -0.69
PTPRD-204ENST00000397606 CABP1Q9NZU7 370 aa10.73□□□□□ -0.69
PTPRD-204ENST00000397606 ADGBQ8N7X0 1667 aa10.73□□□□□ -0.69
PTPRD-204ENST00000397606 GGNBP2Q9H3C7 697 aa10.73□□□□□ -0.69
PTPRD-204ENST00000397606 MAST1Q9Y2H9 1570 aa10.73□□□□□ -0.69
PTPRD-204ENST00000397606 NLRP6P59044 892 aa10.73□□□□□ -0.69
PTPRD-204ENST00000397606 CCDC9Q9Y3X0 531 aaKnown RBP10.73□□□□□ -0.69
PTPRD-204ENST00000397606 CCDC61Q9Y6R9 512 aa10.73□□□□□ -0.69
PTPRD-204ENST00000397606 RIMBP3CA6NJZ7 1639 aa10.72□□□□□ -0.69
PTPRD-204ENST00000397606 RIMBP3BA6NNM3 1639 aa10.72□□□□□ -0.69
PTPRD-204ENST00000397606 RIMBP3Q9UFD9 1639 aa10.72□□□□□ -0.69
PTPRD-204ENST00000397606 SCAF11Q99590 1463 aaKnown RBP10.72□□□□□ -0.69
PTPRD-204ENST00000397606 RIMS2Q9UQ26 1411 aa10.72□□□□□ -0.69
PTPRD-204ENST00000397606 DIAPH1O60610 1272 aaKnown RBP10.72□□□□□ -0.69
PTPRD-204ENST00000397606 PMFBP1Q8TBY8 1022 aa10.72□□□□□ -0.69
PTPRD-204ENST00000397606 CHMP4AQ9BY43 222 aa10.72□□□□□ -0.69
PTPRD-204ENST00000397606 WAPLQ7Z5K2 1190 aa10.72□□□□□ -0.69
PTPRD-204ENST00000397606 CHMP4BQ9H444 224 aaKnown RBP10.71□□□□□ -0.69
PTPRD-204ENST00000397606 SUPT16HQ9Y5B9 1047 aaKnown RBP10.71□□□□□ -0.69
PTPRD-204ENST00000397606 ARXQ96QS3 562 aa10.71□□□□□ -0.7
PTPRD-204ENST00000397606 IRX6P78412 446 aaPredicted RBP10.7□□□□□ -0.7
PTPRD-204ENST00000397606 ABTB2Q8N961 1025 aa10.7□□□□□ -0.7
PTPRD-204ENST00000397606 NUDT16Q96DE0 195 aaKnown RBP10.7□□□□□ -0.7
PTPRD-204ENST00000397606 EVA1CP58658 441 aa10.7□□□□□ -0.7
PTPRD-204ENST00000397606 CCDC146Q8IYE0 955 aa10.7□□□□□ -0.7
PTPRD-204ENST00000397606 FRAT1Q92837 279 aaPredicted RBP10.7□□□□□ -0.7
PTPRD-204ENST00000397606 PDE3BQ13370 1112 aa10.69□□□□□ -0.7
PTPRD-204ENST00000397606 TSPOAP1O95153 1857 aa10.69□□□□□ -0.7
PTPRD-204ENST00000397606 HECW2Q9P2P5 1572 aa10.69□□□□□ -0.7
PTPRD-204ENST00000397606 GCC2Q8IWJ2 1684 aa10.69□□□□□ -0.7
PTPRD-204ENST00000397606 GOLGA2Q08379 1002 aa10.69□□□□□ -0.7
PTPRD-204ENST00000397606 ARHGEF12Q9NZN5 1544 aa10.68□□□□□ -0.7
PTPRD-204ENST00000397606 NGEFQ8N5V2 710 aa10.68□□□□□ -0.7
PTPRD-204ENST00000397606 PRAG1Q86YV5 1406 aa10.68□□□□□ -0.7
PTPRD-204ENST00000397606 CDC42BPAQ5VT25 1732 aa10.68□□□□□ -0.7
PTPRD-204ENST00000397606 ABCA9Q8IUA7 1624 aa10.68□□□□□ -0.7
PTPRD-204ENST00000397606 WASLO00401 505 aaPredicted RBP10.67□□□□□ -0.7
PTPRD-204ENST00000397606 NUTM2GQ5VZR2 741 aa10.67□□□□□ -0.7
PTPRD-204ENST00000397606 RALGAPBQ86X10 1494 aa10.67□□□□□ -0.7
PTPRD-204ENST00000397606 BRD4O60885 1362 aaPredicted RBP10.66□□□□□ -0.7
PTPRD-204ENST00000397606 NPATQ14207 1427 aa10.66□□□□□ -0.7
PTPRD-204ENST00000397606 MTHFSP49914 203 aa10.66□□□□□ -0.7
PTPRD-204ENST00000397606 UHRF1BP1Q6BDS2 1440 aa10.65□□□□□ -0.7
PTPRD-204ENST00000397606 IPO8O15397 1037 aaKnown RBP10.65□□□□□ -0.7
PTPRD-204ENST00000397606 C1orf141Q5JVX7 400 aa10.65□□□□□ -0.7
PTPRD-204ENST00000397606 PPP2R1AP30153 589 aa10.64□□□□□ -0.71
PTPRD-204ENST00000397606 TBX22Q9Y458 520 aa10.64□□□□□ -0.71
PTPRD-204ENST00000397606 EIF2AK4Q9P2K8 1649 aaKnown RBP10.64□□□□□ -0.71
PTPRD-204ENST00000397606 KDM5DQ9BY66 1539 aa10.63□□□□□ -0.71
PTPRD-204ENST00000397606 NINLQ9Y2I6 1382 aa10.63□□□□□ -0.71
PTPRD-204ENST00000397606 RCAN3Q9UKA8 241 aa10.63□□□□□ -0.71
PTPRD-204ENST00000397606 CADPS2Q86UW7 1296 aa10.63□□□□□ -0.71
PTPRD-204ENST00000397606 RUNDC1Q96C34 613 aa10.63□□□□□ -0.71
PTPRD-204ENST00000397606 UPF2Q9HAU5 1272 aaKnown RBP10.63□□□□□ -0.71
PTPRD-204ENST00000397606 RRP7AQ9Y3A4 280 aaKnown RBP10.63□□□□□ -0.71
PTPRD-204ENST00000397606 STK31Q9BXU1 1019 aa10.62□□□□□ -0.71
PTPRD-204ENST00000397606 PHF8Q9UPP1 1060 aa10.62□□□□□ -0.71
PTPRD-204ENST00000397606 PLXNC1O60486 1568 aa10.62□□□□□ -0.71
PTPRD-204ENST00000397606 APAF1O14727 1248 aa10.62□□□□□ -0.71
PTPRD-204ENST00000397606 NSD3Q9BZ95 1437 aa10.62□□□□□ -0.71
PTPRD-204ENST00000397606 RAPGEF4Q8WZA2 1011 aa10.62□□□□□ -0.71
PTPRD-204ENST00000397606 MEX3CQ5U5Q3 659 aaKnown RBP10.62□□□□□ -0.71
PTPRD-204ENST00000397606 TEFQ10587 303 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms