RNA–Protein interactions for RNA: ENST00000396352.8

HOXA3-202, Transcript of homeobox A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA3, Length 3,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-202ENST00000396352 PPP2R1AP30153 589 aa20.77■□□□□ 0.91
HOXA3-202ENST00000396352 AMER1Q5JTC6 1135 aaPredicted RBP20.77■□□□□ 0.91
HOXA3-202ENST00000396352 TET3O43151 1660 aa20.76■□□□□ 0.91
HOXA3-202ENST00000396352 PLEKHH1Q9ULM0 1364 aa20.76■□□□□ 0.91
HOXA3-202ENST00000396352 RTEL1-TNFRSF6BF6WH68 1400 aa20.75■□□□□ 0.91
HOXA3-202ENST00000396352 CLASP1Q7Z460 1538 aa20.75■□□□□ 0.91
HOXA3-202ENST00000396352 ASXL1Q8IXJ9 1541 aa20.75■□□□□ 0.91
HOXA3-202ENST00000396352 KIAA1210Q9ULL0 1709 aa20.74■□□□□ 0.91
HOXA3-202ENST00000396352 KNSTRNQ9Y448 316 aa20.74■□□□□ 0.91
HOXA3-202ENST00000396352 ARAP3Q8WWN8 1544 aa20.74■□□□□ 0.91
HOXA3-202ENST00000396352 ZNF521Q96K83 1311 aa20.73■□□□□ 0.91
HOXA3-202ENST00000396352 NPM2Q86SE8 214 aaKnown RBP20.72■□□□□ 0.91
HOXA3-202ENST00000396352 C20orf194Q5TEA3 1177 aa20.72■□□□□ 0.91
HOXA3-202ENST00000396352 VWDEQ8N2E2 1590 aa20.72■□□□□ 0.91
HOXA3-202ENST00000396352 SPAG9O60271 1321 aaKnown RBP20.71■□□□□ 0.91
HOXA3-202ENST00000396352 PIK3C2GO75747 1445 aa20.71■□□□□ 0.91
HOXA3-202ENST00000396352 KDM5AP29375 1690 aaKnown RBP20.71■□□□□ 0.91
HOXA3-202ENST00000396352 DUSP27Q5VZP5 1158 aa20.71■□□□□ 0.91
HOXA3-202ENST00000396352 INO80Q9ULG1 1556 aaPredicted RBP20.7■□□□□ 0.9
HOXA3-202ENST00000396352 STAC3Q96MF2 364 aa20.69■□□□□ 0.9
HOXA3-202ENST00000396352 NEURL4Q96JN8 1562 aa20.69■□□□□ 0.9
HOXA3-202ENST00000396352 CDCA8Q53HL2 280 aa20.69■□□□□ 0.9
HOXA3-202ENST00000396352 SKAP1Q86WV1 359 aa20.69■□□□□ 0.9
HOXA3-202ENST00000396352 NPC1L1Q9UHC9 1359 aa20.69■□□□□ 0.9
HOXA3-202ENST00000396352 WDR43Q15061 677 aaKnown RBP eCLIP20.68■□□□□ 0.9
HOXA3-202ENST00000396352 AFAP1Q8N556 730 aa20.68■□□□□ 0.9
HOXA3-202ENST00000396352 KDM2BQ8NHM5 1336 aa20.68■□□□□ 0.9
HOXA3-202ENST00000396352 ATP7AQ04656 1500 aa20.66■□□□□ 0.9
HOXA3-202ENST00000396352 ABCA9Q8IUA7 1624 aa20.65■□□□□ 0.9
HOXA3-202ENST00000396352 ABCA6Q8N139 1617 aa20.65■□□□□ 0.9
HOXA3-202ENST00000396352 MAP3K4Q9Y6R4 1608 aa20.65■□□□□ 0.9
HOXA3-202ENST00000396352 EIF3AQ14152 1382 aaKnown RBP20.65■□□□□ 0.9
HOXA3-202ENST00000396352 MROH1Q8NDA8 1641 aa20.64■□□□□ 0.9
HOXA3-202ENST00000396352 IFT172Q9UG01 1749 aa20.63■□□□□ 0.89
HOXA3-202ENST00000396352 GOLGA2Q08379 1002 aa20.63■□□□□ 0.89
HOXA3-202ENST00000396352 RTL5Q5HYW3 569 aaPredicted RBP20.63■□□□□ 0.89
HOXA3-202ENST00000396352 MYOM2P54296 1465 aa20.62■□□□□ 0.89
HOXA3-202ENST00000396352 ERVK-7P63135 1459 aa20.61■□□□□ 0.89
HOXA3-202ENST00000396352 UGGT1Q9NYU2 1555 aa20.61■□□□□ 0.89
HOXA3-202ENST00000396352 SLFN5Q08AF3 891 aa20.6■□□□□ 0.89
HOXA3-202ENST00000396352 TRMT2AQ8IZ69 625 aaKnown RBP20.6■□□□□ 0.89
HOXA3-202ENST00000396352 KIF1BO60333 1816 aa20.59■□□□□ 0.89
HOXA3-202ENST00000396352 KANK1Q14678 1352 aa20.59■□□□□ 0.89
HOXA3-202ENST00000396352 MROH2AA6NES4 1674 aa20.59■□□□□ 0.89
HOXA3-202ENST00000396352 CENPQQ7L2Z9 268 aaPredicted RBP20.59■□□□□ 0.89
HOXA3-202ENST00000396352 MYO3AQ8NEV4 1616 aa20.58■□□□□ 0.89
HOXA3-202ENST00000396352 FANCAO15360 1455 aa20.58■□□□□ 0.88
HOXA3-202ENST00000396352 CCDC146Q8IYE0 955 aa20.56■□□□□ 0.88
HOXA3-202ENST00000396352 SPINK5Q9NQ38 1064 aaPredicted RBP20.56■□□□□ 0.88
HOXA3-202ENST00000396352 EFCAB6Q5THR3 1501 aa20.55■□□□□ 0.88
HOXA3-202ENST00000396352 LAS1LQ9Y4W2 734 aaKnown RBP20.55■□□□□ 0.88
HOXA3-202ENST00000396352 NKTRP30414 1462 aaKnown RBP20.55■□□□□ 0.88
HOXA3-202ENST00000396352 CFAP70Q5T0N1 1121 aa20.54■□□□□ 0.88
HOXA3-202ENST00000396352 NRXN1Q9ULB1 1477 aa20.54■□□□□ 0.88
HOXA3-202ENST00000396352 ADGRF5Q8IZF2 1346 aa20.54■□□□□ 0.88
HOXA3-202ENST00000396352 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.54■□□□□ 0.88
HOXA3-202ENST00000396352 PPRC1Q5VV67 1664 aaKnown RBP20.53■□□□□ 0.88
HOXA3-202ENST00000396352 KIF3BO15066 747 aa20.53■□□□□ 0.88
HOXA3-202ENST00000396352 CARD14Q9BXL6 1004 aa20.53■□□□□ 0.88
HOXA3-202ENST00000396352 APAF1O14727 1248 aa20.52■□□□□ 0.88
HOXA3-202ENST00000396352 ADGRL1O94910 1474 aa20.51■□□□□ 0.87
HOXA3-202ENST00000396352 DDRGK1Q96HY6 314 aa20.51■□□□□ 0.87
HOXA3-202ENST00000396352 USP35Q9P2H5 1018 aa20.51■□□□□ 0.87
HOXA3-202ENST00000396352 KIDINS220Q9ULH0 1771 aa20.5■□□□□ 0.87
HOXA3-202ENST00000396352 NEFMP07197 916 aa20.5■□□□□ 0.87
HOXA3-202ENST00000396352 C8orf34Q49A92 452 aa20.49■□□□□ 0.87
HOXA3-202ENST00000396352 ZC3H13Q5T200 1668 aaKnown RBP20.49■□□□□ 0.87
HOXA3-202ENST00000396352 SLC24A1O60721 1099 aa20.49■□□□□ 0.87
HOXA3-202ENST00000396352 SHPRHQ149N8 1683 aa20.49■□□□□ 0.87
HOXA3-202ENST00000396352 SBNO2Q9Y2G9 1366 aa20.49■□□□□ 0.87
HOXA3-202ENST00000396352 DMRT2Q9Y5R5 561 aa20.48■□□□□ 0.87
HOXA3-202ENST00000396352 SETBP1Q9Y6X0 1596 aa20.48■□□□□ 0.87
HOXA3-202ENST00000396352 ADGRB3O60242 1522 aa20.47■□□□□ 0.87
HOXA3-202ENST00000396352 LMTK2Q8IWU2 1503 aa20.47■□□□□ 0.87
HOXA3-202ENST00000396352 PPM1GO15355 546 aaPredicted RBP20.47■□□□□ 0.87
HOXA3-202ENST00000396352 FAM161AQ3B820 660 aa20.47■□□□□ 0.87
HOXA3-202ENST00000396352 E9PSI1 815 aa20.47■□□□□ 0.87
HOXA3-202ENST00000396352 BCAR3O75815 825 aa20.46■□□□□ 0.87
HOXA3-202ENST00000396352 VIRMAQ69YN4 1812 aaKnown RBP20.46■□□□□ 0.87
HOXA3-202ENST00000396352 POLR3AO14802 1390 aaPredicted RBP20.45■□□□□ 0.86
HOXA3-202ENST00000396352 PPLO60437 1756 aa20.44■□□□□ 0.86
HOXA3-202ENST00000396352 QRICH2Q9H0J4 1663 aa20.44■□□□□ 0.86
HOXA3-202ENST00000396352 NGEFQ8N5V2 710 aa20.43■□□□□ 0.86
HOXA3-202ENST00000396352 NOS1P29475 1434 aa20.42■□□□□ 0.86
HOXA3-202ENST00000396352 ADGRB1O14514 1584 aa20.4■□□□□ 0.86
HOXA3-202ENST00000396352 USP32Q8NFA0 1604 aa20.39■□□□□ 0.86
HOXA3-202ENST00000396352 NSD3Q9BZ95 1437 aa20.39■□□□□ 0.85
HOXA3-202ENST00000396352 CENPJQ9HC77 1338 aaPredicted RBP20.39■□□□□ 0.85
HOXA3-202ENST00000396352 IQSEC2Q5JU85 1478 aa20.39■□□□□ 0.85
HOXA3-202ENST00000396352 RGS3P49796 1198 aa20.38■□□□□ 0.85
HOXA3-202ENST00000396352 WWC1Q8IX03 1113 aa20.38■□□□□ 0.85
HOXA3-202ENST00000396352 SLC4A3P48751 1232 aa20.38■□□□□ 0.85
HOXA3-202ENST00000396352 NINLQ9Y2I6 1382 aa20.37■□□□□ 0.85
HOXA3-202ENST00000396352 ASXL2Q76L83 1435 aa20.37■□□□□ 0.85
HOXA3-202ENST00000396352 IGHDP01880 384 aa20.37■□□□□ 0.85
HOXA3-202ENST00000396352 PDE3AQ14432 1141 aa20.37■□□□□ 0.85
HOXA3-202ENST00000396352 ZNF518AQ6AHZ1 1483 aa20.36■□□□□ 0.85
HOXA3-202ENST00000396352 CGNL1Q0VF96 1302 aa20.35■□□□□ 0.85
HOXA3-202ENST00000396352 FRMPD1Q5SYB0 1578 aa20.35■□□□□ 0.85
HOXA3-202ENST00000396352 NPATQ14207 1427 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 181.5 ms