RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 ZKSCAN1P17029 563 aaPredicted RBP6.07□□□□□ -1.44
PCDH9-201ENST00000377861 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.07□□□□□ -1.44
PCDH9-201ENST00000377861 NSD2O96028 1365 aa6.07□□□□□ -1.44
PCDH9-201ENST00000377861 ATL3Q6DD88 541 aa6.07□□□□□ -1.44
PCDH9-201ENST00000377861 STK31Q9BXU1 1019 aa6.07□□□□□ -1.44
PCDH9-201ENST00000377861 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.07□□□□□ -1.44
PCDH9-201ENST00000377861 NAT10Q9H0A0 1025 aaKnown RBP6.07□□□□□ -1.44
PCDH9-201ENST00000377861 UBE2Q2Q8WVN8 375 aa6.06□□□□□ -1.44
PCDH9-201ENST00000377861 NEMFO60524 1076 aa6.06□□□□□ -1.44
PCDH9-201ENST00000377861 GNAI3P08754 354 aa6.06□□□□□ -1.44
PCDH9-201ENST00000377861 PTPRGP23470 1445 aa6.06□□□□□ -1.44
PCDH9-201ENST00000377861 HSP90AB1P08238 724 aaKnown RBP6.06□□□□□ -1.44
PCDH9-201ENST00000377861 BCANQ96GW7 911 aa6.06□□□□□ -1.44
PCDH9-201ENST00000377861 ZMYM4Q5VZL5 1548 aa6.06□□□□□ -1.44
PCDH9-201ENST00000377861 USP47Q96K76 1375 aa6.06□□□□□ -1.44
PCDH9-201ENST00000377861 SPAG9O60271 1321 aaKnown RBP6.06□□□□□ -1.44
PCDH9-201ENST00000377861 POGKQ9P215 609 aa6.06□□□□□ -1.44
PCDH9-201ENST00000377861 SIRT1Q96EB6 747 aa6.06□□□□□ -1.44
PCDH9-201ENST00000377861 IQSEC3Q9UPP2 1182 aaPredicted RBP6.06□□□□□ -1.44
PCDH9-201ENST00000377861 RABEP1Q15276 862 aa6.06□□□□□ -1.44
PCDH9-201ENST00000377861 SLKQ9H2G2 1235 aaPredicted RBP6.06□□□□□ -1.44
PCDH9-201ENST00000377861 HSP90AA2PQ14568 343 aaPredicted RBP6.05□□□□□ -1.44
PCDH9-201ENST00000377861 INTS3Q68E01 1043 aaKnown RBP6.05□□□□□ -1.44
PCDH9-201ENST00000377861 PSMA5P28066 241 aa6.05□□□□□ -1.44
PCDH9-201ENST00000377861 CLUAP1Q96AJ1 413 aa6.05□□□□□ -1.44
PCDH9-201ENST00000377861 SMARCA4P51532 1647 aa6.05□□□□□ -1.44
PCDH9-201ENST00000377861 ZSCAN31Q96LW9 406 aaPredicted RBP6.05□□□□□ -1.44
PCDH9-201ENST00000377861 TSPYL1Q9H0U9 437 aa6.05□□□□□ -1.44
PCDH9-201ENST00000377861 ERC2O15083 957 aa6.05□□□□□ -1.44
PCDH9-201ENST00000377861 TXLNBQ8N3L3 684 aa6.05□□□□□ -1.44
PCDH9-201ENST00000377861 PTMAP06454 111 aaKnown RBP6.05□□□□□ -1.44
PCDH9-201ENST00000377861 CDK11BP21127 795 aaKnown RBP6.05□□□□□ -1.44
PCDH9-201ENST00000377861 KIAA1107Q9UPP5 1409 aa6.05□□□□□ -1.44
PCDH9-201ENST00000377861 NT5C2P49902 561 aa6.04□□□□□ -1.44
PCDH9-201ENST00000377861 ANAPC15P60006 121 aa6.04□□□□□ -1.44
PCDH9-201ENST00000377861 TUBB2AQ13885 445 aa6.04□□□□□ -1.44
PCDH9-201ENST00000377861 ERC1Q8IUD2 1116 aa6.04□□□□□ -1.44
PCDH9-201ENST00000377861 TUBB2BQ9BVA1 445 aa6.04□□□□□ -1.44
PCDH9-201ENST00000377861 UVSSAQ2YD98 709 aa6.04□□□□□ -1.44
PCDH9-201ENST00000377861 RGL3Q3MIN7 710 aa6.04□□□□□ -1.44
PCDH9-201ENST00000377861 DZIP1LQ8IYY4 767 aaKnown RBP6.04□□□□□ -1.44
PCDH9-201ENST00000377861 HDAC1Q13547 482 aaPredicted RBP6.04□□□□□ -1.44
PCDH9-201ENST00000377861 SNX21Q969T3 373 aa6.04□□□□□ -1.44
PCDH9-201ENST00000377861 KIAA0586Q9BVV6 1533 aa6.04□□□□□ -1.44
PCDH9-201ENST00000377861 EID1Q9Y6B2 187 aa6.04□□□□□ -1.44
PCDH9-201ENST00000377861 CNPY4Q8N129 248 aa6.03□□□□□ -1.44
PCDH9-201ENST00000377861 PIP4K2AP48426 406 aaPredicted RBP6.03□□□□□ -1.44
PCDH9-201ENST00000377861 PLEKHH1Q9ULM0 1364 aa6.03□□□□□ -1.44
PCDH9-201ENST00000377861 BRPF1P55201 1214 aaPredicted RBP6.03□□□□□ -1.44
PCDH9-201ENST00000377861 PANK3Q9H999 370 aa6.03□□□□□ -1.44
PCDH9-201ENST00000377861 CPLX2Q6PUV4 134 aaKnown RBP6.03□□□□□ -1.44
PCDH9-201ENST00000377861 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.03□□□□□ -1.44
PCDH9-201ENST00000377861 NUP160Q12769 1436 aa6.03□□□□□ -1.44
PCDH9-201ENST00000377861 U2AF1L5P0DN76 240 aaPredicted RBP6.02□□□□□ -1.44
PCDH9-201ENST00000377861 U2AF1Q01081 240 aaKnown RBP eCLIP6.02□□□□□ -1.44
PCDH9-201ENST00000377861 DAPK1P53355 1430 aa6.02□□□□□ -1.45
PCDH9-201ENST00000377861 GAPVD1Q14C86 1478 aa6.02□□□□□ -1.45
PCDH9-201ENST00000377861 ATAD2Q6PL18 1390 aa6.02□□□□□ -1.45
PCDH9-201ENST00000377861 GTF2E1P29083 439 aaPredicted RBP6.02□□□□□ -1.45
PCDH9-201ENST00000377861 HMGB1P09429 215 aaKnown RBP6.02□□□□□ -1.45
PCDH9-201ENST00000377861 B4GALNT3Q6L9W6 998 aa6.02□□□□□ -1.45
PCDH9-201ENST00000377861 SLFN5Q08AF3 891 aa6.02□□□□□ -1.45
PCDH9-201ENST00000377861 TEX35Q5T0J7 233 aa6.02□□□□□ -1.45
PCDH9-201ENST00000377861 PDCL3Q9H2J4 239 aa6.02□□□□□ -1.45
PCDH9-201ENST00000377861 CTAGE5O15320 804 aa6.02□□□□□ -1.45
PCDH9-201ENST00000377861 GRIN2BQ13224 1484 aa6.01□□□□□ -1.45
PCDH9-201ENST00000377861 CCDC39Q9UFE4 941 aa6.01□□□□□ -1.45
PCDH9-201ENST00000377861 CCT4P50991 539 aaKnown RBP6.01□□□□□ -1.45
PCDH9-201ENST00000377861 GPRASP1Q5JY77 1395 aa6.01□□□□□ -1.45
PCDH9-201ENST00000377861 DDX11Q96FC9 970 aa6.01□□□□□ -1.45
PCDH9-201ENST00000377861 RGS22Q8NE09 1264 aa6.01□□□□□ -1.45
PCDH9-201ENST00000377861 ERCC4Q92889 916 aaPredicted RBP6.01□□□□□ -1.45
PCDH9-201ENST00000377861 CALRP27797 417 aaKnown RBP6.01□□□□□ -1.45
PCDH9-201ENST00000377861 KRT32Q14532 448 aa6.01□□□□□ -1.45
PCDH9-201ENST00000377861 FANCD2Q9BXW9 1451 aa6.01□□□□□ -1.45
PCDH9-201ENST00000377861 KIF24Q5T7B8 1368 aa6.01□□□□□ -1.45
PCDH9-201ENST00000377861 RAB11FIP3O75154 756 aa6.01□□□□□ -1.45
PCDH9-201ENST00000377861 MCM3P25205 808 aa6.01□□□□□ -1.45
PCDH9-201ENST00000377861 NAIPQ13075 1403 aa6.01□□□□□ -1.45
PCDH9-201ENST00000377861 MYO1BO43795 1136 aa6□□□□□ -1.45
PCDH9-201ENST00000377861 CAMSAP2Q08AD1 1489 aa6□□□□□ -1.45
PCDH9-201ENST00000377861 RBM25P49756 843 aaKnown RBP6□□□□□ -1.45
PCDH9-201ENST00000377861 CCDC173Q0VFZ6 552 aa6□□□□□ -1.45
PCDH9-201ENST00000377861 TSR1Q2NL82 804 aaKnown RBP6□□□□□ -1.45
PCDH9-201ENST00000377861 BMP2KLQ5H9B9 411 aa6□□□□□ -1.45
PCDH9-201ENST00000377861 INTS4Q96HW7 963 aaKnown RBP6□□□□□ -1.45
PCDH9-201ENST00000377861 IGSF3O75054 1194 aa6□□□□□ -1.45
PCDH9-201ENST00000377861 PYM1Q9BRP8 204 aaKnown RBP6□□□□□ -1.45
PCDH9-201ENST00000377861 CFAP45Q9UL16 551 aa6□□□□□ -1.45
PCDH9-201ENST00000377861 PRIMPOLQ96LW4 560 aa6□□□□□ -1.45
PCDH9-201ENST00000377861 CCDC70Q6NSX1 233 aa6□□□□□ -1.45
PCDH9-201ENST00000377861 NCOA1Q15788 1441 aa5.99□□□□□ -1.45
PCDH9-201ENST00000377861 ABCA10Q8WWZ4 1543 aa5.99□□□□□ -1.45
PCDH9-201ENST00000377861 PAXBP1Q9Y5B6 917 aa5.99□□□□□ -1.45
PCDH9-201ENST00000377861 SEMA3FQ13275 785 aa5.99□□□□□ -1.45
PCDH9-201ENST00000377861 FAM107BQ9H098 131 aa5.99□□□□□ -1.45
PCDH9-201ENST00000377861 TDRD9Q8NDG6 1382 aaKnown RBP5.99□□□□□ -1.45
PCDH9-201ENST00000377861 U2SURPO15042 1029 aaKnown RBP5.99□□□□□ -1.45
PCDH9-201ENST00000377861 NOM1Q5C9Z4 860 aaKnown RBP5.99□□□□□ -1.45
PCDH9-201ENST00000377861 C22orf23Q9BZE7 217 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms