RNA–Protein interactions for RNA: ENST00000370021.1

PRPF38B-201, Transcript of pre-mRNA processing factor 38B, humanhuman

TSL 1 (best) BASIC

Gene PRPF38B, Length 3,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38B-201ENST00000370021 U2AF1Q01081 240 aaKnown RBP eCLIP13.14□□□□□ -0.319e-7■■■□□ 17.6
PRPF38B-201ENST00000370021 SLFN5Q08AF3 891 aa13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 PMFBP1Q8TBY8 1022 aa13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 CGNL1Q0VF96 1302 aa13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 A0A0U1RQG5 324 aaPredicted RBP13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 E9PSI1 815 aa13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 FOXD4L6Q3SYB3 417 aaPredicted RBP13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 AMER1Q5JTC6 1135 aaPredicted RBP13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 FOXD4L3Q6VB84 417 aaPredicted RBP13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 RAPGEF6Q8TEU7 1601 aa13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 PTMAP06454 111 aaKnown RBP13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 PLCB2Q00722 1185 aa13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 KIAA1107Q9UPP5 1409 aa13.14□□□□□ -0.31
PRPF38B-201ENST00000370021 GRPEL1Q9HAV7 217 aa13.13□□□□□ -0.31
PRPF38B-201ENST00000370021 DMRT2Q9Y5R5 561 aa13.13□□□□□ -0.31
PRPF38B-201ENST00000370021 ANKRD50Q9ULJ7 1429 aa13.13□□□□□ -0.31
PRPF38B-201ENST00000370021 KDM2BQ8NHM5 1336 aa13.13□□□□□ -0.31
PRPF38B-201ENST00000370021 PLEKHH1Q9ULM0 1364 aa13.13□□□□□ -0.31
PRPF38B-201ENST00000370021 LNPKQ9C0E8 428 aa13.13□□□□□ -0.31
PRPF38B-201ENST00000370021 SMC4Q9NTJ3 1288 aa13.13□□□□□ -0.31
PRPF38B-201ENST00000370021 ABCC5O15440 1437 aa13.13□□□□□ -0.31
PRPF38B-201ENST00000370021 LRPPRCP42704 1394 aaKnown RBP13.13□□□□□ -0.31
PRPF38B-201ENST00000370021 NUP153P49790 1475 aaKnown RBP13.12□□□□□ -0.31
PRPF38B-201ENST00000370021 MRC2Q9UBG0 1479 aa13.12□□□□□ -0.31
PRPF38B-201ENST00000370021 DDX49Q9Y6V7 483 aaKnown RBP13.12□□□□□ -0.31
PRPF38B-201ENST00000370021 ROCK1Q13464 1354 aa13.12□□□□□ -0.31
PRPF38B-201ENST00000370021 PER1O15534 1290 aaPredicted RBP13.12□□□□□ -0.31
PRPF38B-201ENST00000370021 MRE11P49959 708 aa13.12□□□□□ -0.31
PRPF38B-201ENST00000370021 ELL2O00472 640 aaPredicted RBP13.11□□□□□ -0.31
PRPF38B-201ENST00000370021 R3HCC1Q9Y3T6 440 aaKnown RBP13.11□□□□□ -0.31
PRPF38B-201ENST00000370021 CDCA8Q53HL2 280 aa13.11□□□□□ -0.31
PRPF38B-201ENST00000370021 CCDC144AA2RUR9 1427 aa13.1□□□□□ -0.31
PRPF38B-201ENST00000370021 PRG4Q92954 1404 aaPredicted RBP13.1□□□□□ -0.31
PRPF38B-201ENST00000370021 GBP4Q96PP9 640 aa13.1□□□□□ -0.31
PRPF38B-201ENST00000370021 PCDHB15Q9Y5E8 787 aa13.1□□□□□ -0.31
PRPF38B-201ENST00000370021 DISP3Q9P2K9 1392 aa13.1□□□□□ -0.31
PRPF38B-201ENST00000370021 EIF4G3O43432 1585 aaKnown RBP13.09□□□□□ -0.31
PRPF38B-201ENST00000370021 KIAA1211Q6ZU35 1233 aa13.09□□□□□ -0.31
PRPF38B-201ENST00000370021 MBD5Q9P267 1494 aa13.09□□□□□ -0.31
PRPF38B-201ENST00000370021 ZNF608Q9ULD9 1512 aaPredicted RBP13.09□□□□□ -0.31
PRPF38B-201ENST00000370021 TSR2Q969E8 191 aaKnown RBP13.09□□□□□ -0.31
PRPF38B-201ENST00000370021 ITSN2Q9NZM3 1697 aa13.08□□□□□ -0.31
PRPF38B-201ENST00000370021 SLC24A1O60721 1099 aa13.08□□□□□ -0.32
PRPF38B-201ENST00000370021 NUTM2DQ5VT03 806 aaPredicted RBP13.08□□□□□ -0.32
PRPF38B-201ENST00000370021 NOL8Q76FK4 1167 aaKnown RBP13.08□□□□□ -0.32
PRPF38B-201ENST00000370021 KIAA0586Q9BVV6 1533 aa13.07□□□□□ -0.32
PRPF38B-201ENST00000370021 DDX11L8A8MPP1 907 aa13.07□□□□□ -0.32
PRPF38B-201ENST00000370021 TCP11L2Q8N4U5 519 aa13.07□□□□□ -0.32
PRPF38B-201ENST00000370021 RLBP1P12271 317 aa13.06□□□□□ -0.32
PRPF38B-201ENST00000370021 ANKRD45Q5TZF3 282 aa13.06□□□□□ -0.32
PRPF38B-201ENST00000370021 PZPP20742 1482 aa13.06□□□□□ -0.32
PRPF38B-201ENST00000370021 BCORL1Q5H9F3 1711 aa13.06□□□□□ -0.32
PRPF38B-201ENST00000370021 IFT140Q96RY7 1462 aa13.06□□□□□ -0.32
PRPF38B-201ENST00000370021 RRP9O43818 475 aaKnown RBP13.05□□□□□ -0.32
PRPF38B-201ENST00000370021 KIF14Q15058 1648 aa13.05□□□□□ -0.32
PRPF38B-201ENST00000370021 CDC42BPAQ5VT25 1732 aa13.05□□□□□ -0.32
PRPF38B-201ENST00000370021 RNF214Q8ND24 703 aa13.05□□□□□ -0.32
PRPF38B-201ENST00000370021 CFAP53Q96M91 514 aa13.05□□□□□ -0.32
PRPF38B-201ENST00000370021 TRAK1Q9UPV9 953 aa13.05□□□□□ -0.32
PRPF38B-201ENST00000370021 NASPP49321 788 aaPredicted RBP13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 PRDM10Q9NQV6 1147 aa13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 CEP170Q5SW79 1584 aa13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 PARD3Q8TEW0 1356 aa13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 TBC1D32Q96NH3 1257 aa13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 C1orf115Q9H7X2 142 aa13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 CLCN1P35523 988 aa13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 CALD1Q05682 793 aaKnown RBP13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 MCTP1Q6DN14 999 aa13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 WWC1Q8IX03 1113 aa13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 BCL11BQ9C0K0 894 aaPredicted RBP13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 GRIN2AQ12879 1464 aa13.04□□□□□ -0.32
PRPF38B-201ENST00000370021 DZIP1LQ8IYY4 767 aaKnown RBP13.03□□□□□ -0.32
PRPF38B-201ENST00000370021 ADGRL2O95490 1459 aa13.03□□□□□ -0.32
PRPF38B-201ENST00000370021 PDE3AQ14432 1141 aa13.03□□□□□ -0.32
PRPF38B-201ENST00000370021 ZKSCAN2Q63HK3 967 aa13.03□□□□□ -0.32
PRPF38B-201ENST00000370021 ERCC6Q03468 1493 aa13.02□□□□□ -0.32
PRPF38B-201ENST00000370021 CAVIN1Q6NZI2 390 aaKnown RBP13.02□□□□□ -0.32
PRPF38B-201ENST00000370021 TNPO1Q92973 898 aaKnown RBP13.01□□□□□ -0.33
PRPF38B-201ENST00000370021 CAMSAP2Q08AD1 1489 aa13.01□□□□□ -0.33
PRPF38B-201ENST00000370021 KDM5CP41229 1560 aa13.01□□□□□ -0.33
PRPF38B-201ENST00000370021 RBM42Q9BTD8 480 aaKnown RBP13.01□□□□□ -0.33
PRPF38B-201ENST00000370021 USP19O94966 1318 aa13□□□□□ -0.33
PRPF38B-201ENST00000370021 XPCQ01831 940 aaPredicted RBP13□□□□□ -0.33
PRPF38B-201ENST00000370021 TESK2Q96S53 571 aa13□□□□□ -0.33
PRPF38B-201ENST00000370021 MTHFSP49914 203 aa13□□□□□ -0.33
PRPF38B-201ENST00000370021 RARSP54136 660 aaKnown RBP13□□□□□ -0.33
PRPF38B-201ENST00000370021 ERBINQ96RT1 1412 aa12.99□□□□□ -0.33
PRPF38B-201ENST00000370021 CFAP70Q5T0N1 1121 aa12.99□□□□□ -0.33
PRPF38B-201ENST00000370021 EXOSC9Q06265 439 aaKnown RBP12.99□□□□□ -0.33
PRPF38B-201ENST00000370021 SLC12A5Q9H2X9 1139 aa12.99□□□□□ -0.33
PRPF38B-201ENST00000370021 SSFA2P28290 1259 aa12.98□□□□□ -0.33
PRPF38B-201ENST00000370021 STK26Q9P289 416 aa12.98□□□□□ -0.33
PRPF38B-201ENST00000370021 GPATCH8Q9UKJ3 1502 aaKnown RBP12.98□□□□□ -0.33
PRPF38B-201ENST00000370021 E9PCH4 1651 aa12.98□□□□□ -0.33
PRPF38B-201ENST00000370021 GAS2L3Q86XJ1 694 aa12.98□□□□□ -0.33
PRPF38B-201ENST00000370021 PODXL2Q9NZ53 605 aa12.97□□□□□ -0.33
PRPF38B-201ENST00000370021 KDM5DQ9BY66 1539 aa12.97□□□□□ -0.33
PRPF38B-201ENST00000370021 JPH4Q96JJ6 628 aa12.97□□□□□ -0.33
PRPF38B-201ENST00000370021 TROQ12816 1431 aaPredicted RBP12.96□□□□□ -0.33
PRPF38B-201ENST00000370021 ERBB4Q15303 1308 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms