RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 CDK13Q14004 1512 aaKnown RBP13.12□□□□□ -0.31
TPM3-213ENST00000368545 AKT1S1Q96B36 256 aa13.12□□□□□ -0.31
TPM3-213ENST00000368545 DIP2CQ9Y2E4 1556 aa13.11□□□□□ -0.31
TPM3-213ENST00000368545 CCNB3Q8WWL7 1395 aa13.11□□□□□ -0.31
TPM3-213ENST00000368545 SHANK2Q9UPX8 1470 aa13.1□□□□□ -0.31
TPM3-213ENST00000368545 SYNMO15061 1565 aa13.09□□□□□ -0.31
TPM3-213ENST00000368545 CEP170BQ9Y4F5 1589 aaPredicted RBP13.09□□□□□ -0.31
TPM3-213ENST00000368545 MYO3AQ8NEV4 1616 aa13.08□□□□□ -0.32
TPM3-213ENST00000368545 MYO5CQ9NQX4 1742 aa13.08□□□□□ -0.32
TPM3-213ENST00000368545 TSPYL2Q9H2G4 693 aaPredicted RBP13.08□□□□□ -0.32
TPM3-213ENST00000368545 GPBP1L1Q9HC44 474 aaPredicted RBP13.08□□□□□ -0.32
TPM3-213ENST00000368545 NCOA2Q15596 1464 aa13.08□□□□□ -0.32
TPM3-213ENST00000368545 BARGINQ6ZT62 677 aa13.07□□□□□ -0.32
TPM3-213ENST00000368545 RNF17Q9BXT8 1623 aaKnown RBP13.07□□□□□ -0.32
TPM3-213ENST00000368545 FAM135AQ9P2D6 1515 aa13.06□□□□□ -0.32
TPM3-213ENST00000368545 PSEN1P49768 467 aa13.06□□□□□ -0.32
TPM3-213ENST00000368545 CDK11AQ9UQ88 783 aaPredicted RBP13.06□□□□□ -0.32
TPM3-213ENST00000368545 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.06□□□□□ -0.32
TPM3-213ENST00000368545 REM2Q8IYK8 340 aaPredicted RBP13.06□□□□□ -0.32
TPM3-213ENST00000368545 A2ML1A8K2U0 1454 aa13.05□□□□□ -0.32
TPM3-213ENST00000368545 FBXO22Q8NEZ5 403 aa13.05□□□□□ -0.32
TPM3-213ENST00000368545 NCKAP5LQ9HCH0 1330 aa13.05□□□□□ -0.32
TPM3-213ENST00000368545 POLR1AO95602 1720 aaPredicted RBP13.05□□□□□ -0.32
TPM3-213ENST00000368545 MYOM3Q5VTT5 1437 aa13.05□□□□□ -0.32
TPM3-213ENST00000368545 HRCP23327 699 aa13.04□□□□□ -0.32
TPM3-213ENST00000368545 SMYD5Q6GMV2 418 aa13.04□□□□□ -0.32
TPM3-213ENST00000368545 FGD6Q6ZV73 1430 aa13.04□□□□□ -0.32
TPM3-213ENST00000368545 PIP4K2BP78356 416 aa13.04□□□□□ -0.32
TPM3-213ENST00000368545 ZMYND15Q9H091 742 aa13.04□□□□□ -0.32
TPM3-213ENST00000368545 IL27Q8NEV9 243 aa13.03□□□□□ -0.32
TPM3-213ENST00000368545 TROQ12816 1431 aaPredicted RBP13.02□□□□□ -0.32
TPM3-213ENST00000368545 DEPDC5O75140 1603 aa13.01□□□□□ -0.33
TPM3-213ENST00000368545 ZMYM3Q14202 1370 aa13.01□□□□□ -0.33
TPM3-213ENST00000368545 ABCA6Q8N139 1617 aa13.01□□□□□ -0.33
TPM3-213ENST00000368545 ITSN2Q9NZM3 1697 aa13□□□□□ -0.33
TPM3-213ENST00000368545 PTPN23Q9H3S7 1636 aa13□□□□□ -0.33
TPM3-213ENST00000368545 AK7Q96M32 723 aa13□□□□□ -0.33
TPM3-213ENST00000368545 KIF14Q15058 1648 aa12.99□□□□□ -0.33
TPM3-213ENST00000368545 MIA2Q96PC5 1412 aa12.99□□□□□ -0.33
TPM3-213ENST00000368545 EFCAB3Q8N7B9 438 aa12.99□□□□□ -0.33
TPM3-213ENST00000368545 LARP6Q9BRS8 491 aaKnown RBP12.99□□□□□ -0.33
TPM3-213ENST00000368545 MED14O60244 1454 aa12.99□□□□□ -0.33
TPM3-213ENST00000368545 ARID3CA6NKF2 412 aa12.98□□□□□ -0.33
TPM3-213ENST00000368545 PHF8Q9UPP1 1060 aa12.98□□□□□ -0.33
TPM3-213ENST00000368545 NLRP6P59044 892 aa12.98□□□□□ -0.33
TPM3-213ENST00000368545 RBM42Q9BTD8 480 aaKnown RBP12.98□□□□□ -0.33
TPM3-213ENST00000368545 VWDEQ8N2E2 1590 aa12.97□□□□□ -0.33
TPM3-213ENST00000368545 ZEB1P37275 1124 aaPredicted RBP12.97□□□□□ -0.33
TPM3-213ENST00000368545 RSPH6AQ9H0K4 717 aa12.97□□□□□ -0.33
TPM3-213ENST00000368545 RGS17Q9UGC6 210 aaPredicted RBP12.97□□□□□ -0.33
TPM3-213ENST00000368545 FAM50AQ14320 339 aaKnown RBP12.95□□□□□ -0.34
TPM3-213ENST00000368545 ZNF579Q8NAF0 562 aaKnown RBP12.95□□□□□ -0.34
TPM3-213ENST00000368545 ALKQ9UM73 1620 aa12.95□□□□□ -0.34
TPM3-213ENST00000368545 RBM26Q5T8P6 1007 aaKnown RBP12.95□□□□□ -0.34
TPM3-213ENST00000368545 KDM4CQ9H3R0 1056 aa12.95□□□□□ -0.34
TPM3-213ENST00000368545 DNMT1P26358 1616 aaKnown RBP12.95□□□□□ -0.34
TPM3-213ENST00000368545 CDK12Q9NYV4 1490 aaPredicted RBP12.95□□□□□ -0.34
TPM3-213ENST00000368545 FAM135BQ49AJ0 1406 aa12.94□□□□□ -0.34
TPM3-213ENST00000368545 ARHGAP5Q13017 1502 aa12.94□□□□□ -0.34
TPM3-213ENST00000368545 MYT1LQ9UL68 1186 aa12.94□□□□□ -0.34
TPM3-213ENST00000368545 ARIH1Q9Y4X5 557 aaPredicted RBP12.94□□□□□ -0.34
TPM3-213ENST00000368545 ANKLE2Q86XL3 938 aa12.93□□□□□ -0.34
TPM3-213ENST00000368545 NEURL4Q96JN8 1562 aa12.93□□□□□ -0.34
TPM3-213ENST00000368545 MFSD10Q14728 455 aa12.92□□□□□ -0.34
TPM3-213ENST00000368545 CABP2Q9NPB3 220 aa12.92□□□□□ -0.34
TPM3-213ENST00000368545 CDC42BPAQ5VT25 1732 aa12.92□□□□□ -0.34
TPM3-213ENST00000368545 CCDC61Q9Y6R9 512 aa12.92□□□□□ -0.34
TPM3-213ENST00000368545 ABCC1P33527 1531 aa12.91□□□□□ -0.34
TPM3-213ENST00000368545 SOX12O15370 315 aa12.91□□□□□ -0.34
TPM3-213ENST00000368545 KRI1Q8N9T8 703 aaKnown RBP12.91□□□□□ -0.34
TPM3-213ENST00000368545 KDM5DQ9BY66 1539 aa12.91□□□□□ -0.34
TPM3-213ENST00000368545 PITPNM1O00562 1244 aa12.91□□□□□ -0.34
TPM3-213ENST00000368545 PDE4AP27815 886 aa12.91□□□□□ -0.34
TPM3-213ENST00000368545 CCER1Q8TC90 406 aaPredicted RBP12.91□□□□□ -0.34
TPM3-213ENST00000368545 NLRP1Q9C000 1473 aa12.9□□□□□ -0.34
TPM3-213ENST00000368545 NPHP4O75161 1426 aaPredicted RBP12.9□□□□□ -0.34
TPM3-213ENST00000368545 GPIHBP1Q8IV16 184 aa12.9□□□□□ -0.34
TPM3-213ENST00000368545 MLLT3P42568 568 aaPredicted RBP12.89□□□□□ -0.35
TPM3-213ENST00000368545 CHADLQ6NUI6 762 aa12.89□□□□□ -0.35
TPM3-213ENST00000368545 THEMISQ8N1K5 641 aaPredicted RBP12.89□□□□□ -0.35
TPM3-213ENST00000368545 GPATCH8Q9UKJ3 1502 aaKnown RBP12.89□□□□□ -0.35
TPM3-213ENST00000368545 CLTCQ00610 1675 aaKnown RBP12.89□□□□□ -0.35
TPM3-213ENST00000368545 ITGAEP38570 1179 aa12.89□□□□□ -0.35
TPM3-213ENST00000368545 UPF1Q92900 1129 aaKnown RBP eCLIP12.89□□□□□ -0.357e-32■■■■□ 24.9
TPM3-213ENST00000368545 LRRC7Q96NW7 1537 aa12.89□□□□□ -0.35
TPM3-213ENST00000368545 KIDINS220Q9ULH0 1771 aa12.89□□□□□ -0.35
TPM3-213ENST00000368545 POTEAQ6S8J7 498 aa12.88□□□□□ -0.35
TPM3-213ENST00000368545 ARID3AQ99856 593 aa12.88□□□□□ -0.35
TPM3-213ENST00000368545 CRISPLD2Q9H0B8 497 aa12.88□□□□□ -0.35
TPM3-213ENST00000368545 ZNF772Q68DY9 489 aaPredicted RBP12.88□□□□□ -0.35
TPM3-213ENST00000368545 DDX27Q96GQ7 796 aaKnown RBP12.88□□□□□ -0.35
TPM3-213ENST00000368545 C1orf115Q9H7X2 142 aa12.88□□□□□ -0.35
TPM3-213ENST00000368545 PREX2Q70Z35 1606 aa12.88□□□□□ -0.35
TPM3-213ENST00000368545 IFNL1Q8IU54 200 aa12.87□□□□□ -0.35
TPM3-213ENST00000368545 SETD5Q9C0A6 1442 aa12.87□□□□□ -0.35
TPM3-213ENST00000368545 PLEKHH2Q8IVE3 1493 aa12.87□□□□□ -0.35
TPM3-213ENST00000368545 PLXNC1O60486 1568 aa12.86□□□□□ -0.35
TPM3-213ENST00000368545 IQGAP1P46940 1657 aa12.86□□□□□ -0.35
TPM3-213ENST00000368545 TRIM66O15016 1216 aa12.86□□□□□ -0.35
TPM3-213ENST00000368545 CAMK2BQ13554 666 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms