RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 CABP2Q9NPB3 220 aa18.47■□□□□ 0.55
TRIM4-201ENST00000349062 YEATS2Q9ULM3 1422 aa18.47■□□□□ 0.55
TRIM4-201ENST00000349062 GPRASP1Q5JY77 1395 aa18.46■□□□□ 0.55
TRIM4-201ENST00000349062 ABCA9Q8IUA7 1624 aa18.46■□□□□ 0.55
TRIM4-201ENST00000349062 SRPK2P78362 688 aaKnown RBP18.45■□□□□ 0.54
TRIM4-201ENST00000349062 ESF1Q9H501 851 aaKnown RBP18.45■□□□□ 0.54
TRIM4-201ENST00000349062 CENPJQ9HC77 1338 aaPredicted RBP18.45■□□□□ 0.54
TRIM4-201ENST00000349062 COL17A1Q9UMD9 1497 aaPredicted RBP18.45■□□□□ 0.54
TRIM4-201ENST00000349062 MINK1Q8N4C8 1332 aaPredicted RBP18.45■□□□□ 0.54
TRIM4-201ENST00000349062 PRDM15P57071 1507 aaPredicted RBP18.45■□□□□ 0.54
TRIM4-201ENST00000349062 POGZQ7Z3K3 1410 aa18.44■□□□□ 0.54
TRIM4-201ENST00000349062 NPATQ14207 1427 aa18.44■□□□□ 0.54
TRIM4-201ENST00000349062 EIF3AQ14152 1382 aaKnown RBP18.43■□□□□ 0.54
TRIM4-201ENST00000349062 POGKQ9P215 609 aa18.43■□□□□ 0.54
TRIM4-201ENST00000349062 RCAN3Q9UKA8 241 aa18.43■□□□□ 0.54
TRIM4-201ENST00000349062 RRP7AQ9Y3A4 280 aaKnown RBP18.42■□□□□ 0.54
TRIM4-201ENST00000349062 MAGI2Q86UL8 1455 aa18.42■□□□□ 0.54
TRIM4-201ENST00000349062 SCAF11Q99590 1463 aaKnown RBP18.42■□□□□ 0.54
TRIM4-201ENST00000349062 CARD14Q9BXL6 1004 aa18.42■□□□□ 0.54
TRIM4-201ENST00000349062 PARD3Q8TEW0 1356 aa18.42■□□□□ 0.54
TRIM4-201ENST00000349062 AMER1Q5JTC6 1135 aaPredicted RBP18.41■□□□□ 0.54
TRIM4-201ENST00000349062 MORC1Q86VD1 984 aa18.41■□□□□ 0.54
TRIM4-201ENST00000349062 EXOC6Q8TAG9 804 aa18.41■□□□□ 0.54
TRIM4-201ENST00000349062 TRPM2O94759 1503 aa18.4■□□□□ 0.54
TRIM4-201ENST00000349062 KIDINS220Q9ULH0 1771 aa18.4■□□□□ 0.54
TRIM4-201ENST00000349062 PTPRTO14522 1441 aa18.4■□□□□ 0.54
TRIM4-201ENST00000349062 APAF1O14727 1248 aa18.39■□□□□ 0.54
TRIM4-201ENST00000349062 TSPOAP1O95153 1857 aa18.39■□□□□ 0.53
TRIM4-201ENST00000349062 INO80Q9ULG1 1556 aaPredicted RBP18.39■□□□□ 0.53
TRIM4-201ENST00000349062 PPM1GO15355 546 aaPredicted RBP18.38■□□□□ 0.53
TRIM4-201ENST00000349062 POLR1AO95602 1720 aaPredicted RBP18.38■□□□□ 0.53
TRIM4-201ENST00000349062 VGFO15240 615 aaPredicted RBP18.38■□□□□ 0.53
TRIM4-201ENST00000349062 SPHKAPQ2M3C7 1700 aa18.38■□□□□ 0.53
TRIM4-201ENST00000349062 CEP152O94986 1710 aa18.37■□□□□ 0.53
TRIM4-201ENST00000349062 NUTM2FA1L443 756 aa18.37■□□□□ 0.53
TRIM4-201ENST00000349062 SKAP1Q86WV1 359 aa18.36■□□□□ 0.53
TRIM4-201ENST00000349062 ARAP3Q8WWN8 1544 aa18.35■□□□□ 0.53
TRIM4-201ENST00000349062 SMG6Q86US8 1419 aaKnown RBP18.35■□□□□ 0.53
TRIM4-201ENST00000349062 TET3O43151 1660 aa18.34■□□□□ 0.53
TRIM4-201ENST00000349062 EIF2AK4Q9P2K8 1649 aaKnown RBP18.34■□□□□ 0.53
TRIM4-201ENST00000349062 C14orf93Q9H972 538 aaKnown RBP18.34■□□□□ 0.53
TRIM4-201ENST00000349062 PRAM1Q96QH2 718 aa18.34■□□□□ 0.53
TRIM4-201ENST00000349062 MADDQ8WXG6 1647 aa18.33■□□□□ 0.52
TRIM4-201ENST00000349062 DEKP35659 375 aaKnown RBP18.33■□□□□ 0.52
TRIM4-201ENST00000349062 RRP1P56182 461 aaKnown RBP18.33■□□□□ 0.52
TRIM4-201ENST00000349062 GGNBP2Q9H3C7 697 aa18.33■□□□□ 0.52
TRIM4-201ENST00000349062 PPRC1Q5VV67 1664 aaKnown RBP18.32■□□□□ 0.52
TRIM4-201ENST00000349062 LRPPRCP42704 1394 aaKnown RBP18.32■□□□□ 0.52
TRIM4-201ENST00000349062 FBLN1P23142 703 aa18.31■□□□□ 0.52
TRIM4-201ENST00000349062 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.31■□□□□ 0.52
TRIM4-201ENST00000349062 WAPLQ7Z5K2 1190 aa18.31■□□□□ 0.52
TRIM4-201ENST00000349062 U2SURPO15042 1029 aaKnown RBP18.31■□□□□ 0.52
TRIM4-201ENST00000349062 STAC3Q96MF2 364 aa18.3■□□□□ 0.52
TRIM4-201ENST00000349062 EFCAB6Q5THR3 1501 aa18.3■□□□□ 0.52
TRIM4-201ENST00000349062 TRHP20396 242 aaPredicted RBP18.3■□□□□ 0.52
TRIM4-201ENST00000349062 NPM2Q86SE8 214 aaKnown RBP18.3■□□□□ 0.52
TRIM4-201ENST00000349062 MROH1Q8NDA8 1641 aa18.29■□□□□ 0.52
TRIM4-201ENST00000349062 C20orf194Q5TEA3 1177 aa18.28■□□□□ 0.52
TRIM4-201ENST00000349062 MTHFSP49914 203 aa18.28■□□□□ 0.52
TRIM4-201ENST00000349062 NSD3Q9BZ95 1437 aa18.28■□□□□ 0.52
TRIM4-201ENST00000349062 HECW2Q9P2P5 1572 aa18.28■□□□□ 0.52
TRIM4-201ENST00000349062 MLH3Q9UHC1 1453 aa18.27■□□□□ 0.52
TRIM4-201ENST00000349062 RNF17Q9BXT8 1623 aaKnown RBP18.27■□□□□ 0.52
TRIM4-201ENST00000349062 FANCIQ9NVI1 1328 aa18.27■□□□□ 0.51
TRIM4-201ENST00000349062 CEBPAP49715 358 aaPredicted RBP18.27■□□□□ 0.51
TRIM4-201ENST00000349062 ABCA6Q8N139 1617 aa18.26■□□□□ 0.51
TRIM4-201ENST00000349062 CRBNQ96SW2 442 aa18.26■□□□□ 0.51
TRIM4-201ENST00000349062 EVC2Q86UK5 1308 aa18.26■□□□□ 0.51
TRIM4-201ENST00000349062 U2AF1L5P0DN76 240 aaPredicted RBP18.26■□□□□ 0.51
TRIM4-201ENST00000349062 U2AF1Q01081 240 aaKnown RBP eCLIP18.26■□□□□ 0.51
TRIM4-201ENST00000349062 FRMPD1Q5SYB0 1578 aa18.26■□□□□ 0.51
TRIM4-201ENST00000349062 SOX12O15370 315 aa18.25■□□□□ 0.51
TRIM4-201ENST00000349062 KIF1BO60333 1816 aa18.25■□□□□ 0.51
TRIM4-201ENST00000349062 GOLGA2Q08379 1002 aa18.25■□□□□ 0.51
TRIM4-201ENST00000349062 SPINK5Q9NQ38 1064 aaPredicted RBP18.25■□□□□ 0.51
TRIM4-201ENST00000349062 CANXP27824 592 aaKnown RBP18.24■□□□□ 0.51
TRIM4-201ENST00000349062 ERVK-7P63135 1459 aa18.24■□□□□ 0.51
TRIM4-201ENST00000349062 BCL2L13Q9BXK5 485 aa18.24■□□□□ 0.51
TRIM4-201ENST00000349062 SLC52A1Q9NWF4 448 aa18.24■□□□□ 0.51
TRIM4-201ENST00000349062 DMRT2Q9Y5R5 561 aa18.24■□□□□ 0.51
TRIM4-201ENST00000349062 PLEKHH1Q9ULM0 1364 aa18.24■□□□□ 0.51
TRIM4-201ENST00000349062 PLEKHG5O94827 1062 aa18.24■□□□□ 0.51
TRIM4-201ENST00000349062 MROH2AA6NES4 1674 aa18.23■□□□□ 0.51
TRIM4-201ENST00000349062 DEPDC5O75140 1603 aa18.23■□□□□ 0.51
TRIM4-201ENST00000349062 FRAT1Q92837 279 aaPredicted RBP18.23■□□□□ 0.51
TRIM4-201ENST00000349062 ABCC3O15438 1527 aa18.23■□□□□ 0.51
TRIM4-201ENST00000349062 TXNDC2Q86VQ3 553 aa18.23■□□□□ 0.51
TRIM4-201ENST00000349062 CABP1Q9NZU7 370 aa18.21■□□□□ 0.51
TRIM4-201ENST00000349062 NEO1Q92859 1461 aa18.21■□□□□ 0.51
TRIM4-201ENST00000349062 MAP3K4Q9Y6R4 1608 aa18.21■□□□□ 0.5
TRIM4-201ENST00000349062 VWDEQ8N2E2 1590 aa18.2■□□□□ 0.5
TRIM4-201ENST00000349062 NCKAP5LQ9HCH0 1330 aa18.2■□□□□ 0.5
TRIM4-201ENST00000349062 ASXL1Q8IXJ9 1541 aa18.2■□□□□ 0.5
TRIM4-201ENST00000349062 CGNL1Q0VF96 1302 aa18.2■□□□□ 0.5
TRIM4-201ENST00000349062 PDE3BQ13370 1112 aa18.2■□□□□ 0.5
TRIM4-201ENST00000349062 BCAR3O75815 825 aa18.19■□□□□ 0.5
TRIM4-201ENST00000349062 PAK3O75914 559 aaPredicted RBP18.19■□□□□ 0.5
TRIM4-201ENST00000349062 RPGRIP1LQ68CZ1 1315 aa18.19■□□□□ 0.5
TRIM4-201ENST00000349062 ERICH6BQ5W0A0 696 aa18.19■□□□□ 0.5
TRIM4-201ENST00000349062 CDK19Q9BWU1 502 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms