RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 CARD11Q9BXL7 1154 aa24.42■■□□□ 1.5
CLDN4-201ENST00000340958 UBR1Q8IWV7 1749 aa24.41■■□□□ 1.5
CLDN4-201ENST00000340958 ROCK2O75116 1388 aaKnown RBP24.41■■□□□ 1.5
CLDN4-201ENST00000340958 PIK3C2BO00750 1634 aa24.41■■□□□ 1.5
CLDN4-201ENST00000340958 RALGAPBQ86X10 1494 aa24.4■■□□□ 1.5
CLDN4-201ENST00000340958 IDI1Q13907 227 aa24.4■■□□□ 1.5
CLDN4-201ENST00000340958 NEURL4Q96JN8 1562 aa24.4■■□□□ 1.5
CLDN4-201ENST00000340958 STAG3Q9UJ98 1225 aa24.39■■□□□ 1.49
CLDN4-201ENST00000340958 ADGRB3O60242 1522 aa24.37■■□□□ 1.49
CLDN4-201ENST00000340958 POLR1AO95602 1720 aaPredicted RBP24.36■■□□□ 1.49
CLDN4-201ENST00000340958 RPGRIP1LQ68CZ1 1315 aa24.34■■□□□ 1.49
CLDN4-201ENST00000340958 NCKAP5LQ9HCH0 1330 aa24.34■■□□□ 1.49
CLDN4-201ENST00000340958 THEMISQ8N1K5 641 aaPredicted RBP24.34■■□□□ 1.49
CLDN4-201ENST00000340958 USP47Q96K76 1375 aa24.33■■□□□ 1.49
CLDN4-201ENST00000340958 KDM5AP29375 1690 aaKnown RBP24.33■■□□□ 1.49
CLDN4-201ENST00000340958 MYO5BQ9ULV0 1848 aa24.31■■□□□ 1.48
CLDN4-201ENST00000340958 NBPF1Q3BBV0 1214 aa24.31■■□□□ 1.48
CLDN4-201ENST00000340958 TRPM1Q7Z4N2 1603 aa24.31■■□□□ 1.48
CLDN4-201ENST00000340958 DMRT2Q9Y5R5 561 aa24.29■■□□□ 1.48
CLDN4-201ENST00000340958 MYOM2P54296 1465 aa24.29■■□□□ 1.48
CLDN4-201ENST00000340958 ADGRF5Q8IZF2 1346 aa24.28■■□□□ 1.48
CLDN4-201ENST00000340958 SLIT1O75093 1534 aa24.26■■□□□ 1.47
CLDN4-201ENST00000340958 VGFO15240 615 aaPredicted RBP24.26■■□□□ 1.47
CLDN4-201ENST00000340958 NUTM2DQ5VT03 806 aaPredicted RBP24.26■■□□□ 1.47
CLDN4-201ENST00000340958 TMEM131LA2VDJ0 1609 aa24.26■■□□□ 1.47
CLDN4-201ENST00000340958 ARHGAP23Q9P227 1491 aa24.25■■□□□ 1.47
CLDN4-201ENST00000340958 ANKLE2Q86XL3 938 aa24.25■■□□□ 1.47
CLDN4-201ENST00000340958 DDX10Q13206 875 aaKnown RBP24.24■■□□□ 1.47
CLDN4-201ENST00000340958 IFT172Q9UG01 1749 aa24.23■■□□□ 1.47
CLDN4-201ENST00000340958 GPRASP1Q5JY77 1395 aa24.22■■□□□ 1.47
CLDN4-201ENST00000340958 TMEM2Q9UHN6 1383 aa24.22■■□□□ 1.47
CLDN4-201ENST00000340958 CFAP70Q5T0N1 1121 aa24.22■■□□□ 1.47
CLDN4-201ENST00000340958 PPLO60437 1756 aa24.21■■□□□ 1.47
CLDN4-201ENST00000340958 ST20-MTHFSA0A0A6YYL1 179 aa24.21■■□□□ 1.47
CLDN4-201ENST00000340958 IQGAP1P46940 1657 aa24.21■■□□□ 1.47
CLDN4-201ENST00000340958 MED14O60244 1454 aa24.2■■□□□ 1.47
CLDN4-201ENST00000340958 SCAF11Q99590 1463 aaKnown RBP24.2■■□□□ 1.47
CLDN4-201ENST00000340958 LTKP29376 864 aa24.19■■□□□ 1.46
CLDN4-201ENST00000340958 NPHP4O75161 1426 aaPredicted RBP24.18■■□□□ 1.46
CLDN4-201ENST00000340958 NEXMIFQ5QGS0 1516 aa24.18■■□□□ 1.46
CLDN4-201ENST00000340958 NRXN1Q9ULB1 1477 aa24.17■■□□□ 1.46
CLDN4-201ENST00000340958 LAMC1P11047 1609 aa24.17■■□□□ 1.46
CLDN4-201ENST00000340958 TXNDC2Q86VQ3 553 aa24.17■■□□□ 1.46
CLDN4-201ENST00000340958 WASHC2AQ641Q2 1341 aa24.16■■□□□ 1.46
CLDN4-201ENST00000340958 POLR3GLQ9BT43 218 aa24.16■■□□□ 1.46
CLDN4-201ENST00000340958 PIK3C2GO75747 1445 aa24.15■■□□□ 1.46
CLDN4-201ENST00000340958 SENP3Q9H4L4 574 aaPredicted RBP24.14■■□□□ 1.46
CLDN4-201ENST00000340958 KIAA1210Q9ULL0 1709 aa24.14■■□□□ 1.46
CLDN4-201ENST00000340958 EID1Q9Y6B2 187 aa24.14■■□□□ 1.45
CLDN4-201ENST00000340958 ZFYVE9O95405 1425 aa24.13■■□□□ 1.45
CLDN4-201ENST00000340958 C11orf95C9JLR9 678 aaPredicted RBP24.13■■□□□ 1.45
CLDN4-201ENST00000340958 HDGFP51858 240 aaKnown RBP24.13■■□□□ 1.45
CLDN4-201ENST00000340958 C14orf93Q9H972 538 aaKnown RBP24.13■■□□□ 1.45
CLDN4-201ENST00000340958 EIF3AQ14152 1382 aaKnown RBP24.12■■□□□ 1.45
CLDN4-201ENST00000340958 CCDC7Q96M83 1385 aa24.12■■□□□ 1.45
CLDN4-201ENST00000340958 RIMS2Q9UQ26 1411 aa24.12■■□□□ 1.45
CLDN4-201ENST00000340958 KIF7Q2M1P5 1343 aa24.11■■□□□ 1.45
CLDN4-201ENST00000340958 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.1■■□□□ 1.45
CLDN4-201ENST00000340958 LTBP4Q8N2S1 1624 aa24.1■■□□□ 1.45
CLDN4-201ENST00000340958 ZNF335Q9H4Z2 1342 aaPredicted RBP24.1■■□□□ 1.45
CLDN4-201ENST00000340958 MIER1Q8N108 512 aa24.08■■□□□ 1.45
CLDN4-201ENST00000340958 TMEM132EQ6IEE7 984 aa24.06■■□□□ 1.44
CLDN4-201ENST00000340958 BCANQ96GW7 911 aa24.06■■□□□ 1.44
CLDN4-201ENST00000340958 TMF1P82094 1093 aa24.04■■□□□ 1.44
CLDN4-201ENST00000340958 SETBP1Q9Y6X0 1596 aa24.04■■□□□ 1.44
CLDN4-201ENST00000340958 TRAK1Q9UPV9 953 aa24.03■■□□□ 1.44
CLDN4-201ENST00000340958 STRCP1A6NGW2 1772 aa24.02■■□□□ 1.44
CLDN4-201ENST00000340958 CERKQ8TCT0 537 aa24.01■■□□□ 1.43
CLDN4-201ENST00000340958 PLEKHG1Q9ULL1 1385 aa24.01■■□□□ 1.43
CLDN4-201ENST00000340958 TESK2Q96S53 571 aa24■■□□□ 1.43
CLDN4-201ENST00000340958 ANP32CO43423 234 aa23.98■■□□□ 1.43
CLDN4-201ENST00000340958 SLC26A8Q96RN1 970 aa23.98■■□□□ 1.43
CLDN4-201ENST00000340958 SLC24A1O60721 1099 aa23.98■■□□□ 1.43
CLDN4-201ENST00000340958 STK26Q9P289 416 aa23.97■■□□□ 1.43
CLDN4-201ENST00000340958 ADGRB1O14514 1584 aa23.97■■□□□ 1.43
CLDN4-201ENST00000340958 CENPJQ9HC77 1338 aaPredicted RBP23.95■■□□□ 1.43
CLDN4-201ENST00000340958 CDCA8Q53HL2 280 aa23.95■■□□□ 1.42
CLDN4-201ENST00000340958 CPS1P31327 1500 aa23.95■■□□□ 1.42
CLDN4-201ENST00000340958 NRXN3Q9Y4C0 1643 aa23.94■■□□□ 1.42
CLDN4-201ENST00000340958 ALKQ9UM73 1620 aa23.94■■□□□ 1.42
CLDN4-201ENST00000340958 DISP3Q9P2K9 1392 aa23.94■■□□□ 1.42
CLDN4-201ENST00000340958 ADAMTS13Q76LX8 1427 aa23.93■■□□□ 1.42
CLDN4-201ENST00000340958 DIP2AQ14689 1571 aa23.91■■□□□ 1.42
CLDN4-201ENST00000340958 CHD2O14647 1828 aaKnown RBP23.89■■□□□ 1.42
CLDN4-201ENST00000340958 YTHDC2Q9H6S0 1430 aaKnown RBP23.88■■□□□ 1.41
CLDN4-201ENST00000340958 IQSEC2Q5JU85 1478 aa23.88■■□□□ 1.41
CLDN4-201ENST00000340958 POGKQ9P215 609 aa23.88■■□□□ 1.41
CLDN4-201ENST00000340958 NWD1Q149M9 1564 aa23.88■■□□□ 1.41
CLDN4-201ENST00000340958 TBX22Q9Y458 520 aa23.87■■□□□ 1.41
CLDN4-201ENST00000340958 LRRC7Q96NW7 1537 aa23.86■■□□□ 1.41
CLDN4-201ENST00000340958 SAFB2Q14151 953 aaKnown RBP eCLIP23.86■■□□□ 1.41
CLDN4-201ENST00000340958 ASXL1Q8IXJ9 1541 aa23.85■■□□□ 1.41
CLDN4-201ENST00000340958 XIRP1Q702N8 1843 aaKnown RBP23.84■■□□□ 1.41
CLDN4-201ENST00000340958 KCNA6P17658 529 aa23.84■■□□□ 1.41
CLDN4-201ENST00000340958 FBXO41Q8TF61 875 aa23.84■■□□□ 1.41
CLDN4-201ENST00000340958 PRAM1Q96QH2 718 aa23.83■■□□□ 1.41
CLDN4-201ENST00000340958 SBNO2Q9Y2G9 1366 aa23.83■■□□□ 1.4
CLDN4-201ENST00000340958 SETD1AO15047 1707 aaKnown RBP23.83■■□□□ 1.4
CLDN4-201ENST00000340958 ILDR1Q86SU0 546 aaPredicted RBP23.82■■□□□ 1.4
CLDN4-201ENST00000340958 QRICH2Q9H0J4 1663 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms