RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 TRPM1Q7Z4N2 1603 aa5.84□□□□□ -1.47
MCF2-201ENST00000338585 C11orf95C9JLR9 678 aaPredicted RBP5.84□□□□□ -1.47
MCF2-201ENST00000338585 MIER1Q8N108 512 aa5.84□□□□□ -1.47
MCF2-201ENST00000338585 CARD11Q9BXL7 1154 aa5.84□□□□□ -1.47
MCF2-201ENST00000338585 KIF1BO60333 1816 aa5.84□□□□□ -1.47
MCF2-201ENST00000338585 ROCK2O75116 1388 aaKnown RBP5.84□□□□□ -1.47
MCF2-201ENST00000338585 USP47Q96K76 1375 aa5.84□□□□□ -1.47
MCF2-201ENST00000338585 ADGRB3O60242 1522 aa5.84□□□□□ -1.47
MCF2-201ENST00000338585 PREX1Q8TCU6 1659 aa5.84□□□□□ -1.48
MCF2-201ENST00000338585 PIK3C2BO00750 1634 aa5.83□□□□□ -1.48
MCF2-201ENST00000338585 MADDQ8WXG6 1647 aa5.83□□□□□ -1.48
MCF2-201ENST00000338585 IDI1Q13907 227 aa5.83□□□□□ -1.48
MCF2-201ENST00000338585 ERVK-7P63135 1459 aa5.83□□□□□ -1.48
MCF2-201ENST00000338585 WASHC2AQ641Q2 1341 aa5.83□□□□□ -1.48
MCF2-201ENST00000338585 NEURL4Q96JN8 1562 aa5.83□□□□□ -1.48
MCF2-201ENST00000338585 ADGRF5Q8IZF2 1346 aa5.82□□□□□ -1.48
MCF2-201ENST00000338585 IFT172Q9UG01 1749 aa5.82□□□□□ -1.48
MCF2-201ENST00000338585 ST20-MTHFSA0A0A6YYL1 179 aa5.81□□□□□ -1.48
MCF2-201ENST00000338585 NUTM2DQ5VT03 806 aaPredicted RBP5.81□□□□□ -1.48
MCF2-201ENST00000338585 ESF1Q9H501 851 aaKnown RBP5.81□□□□□ -1.48
MCF2-201ENST00000338585 ZMYM3Q14202 1370 aa5.81□□□□□ -1.48
MCF2-201ENST00000338585 GPRASP1Q5JY77 1395 aa5.81□□□□□ -1.48
MCF2-201ENST00000338585 MYOM2P54296 1465 aa5.81□□□□□ -1.48
MCF2-201ENST00000338585 SLC52A1Q9NWF4 448 aa5.81□□□□□ -1.48
MCF2-201ENST00000338585 MYO5BQ9ULV0 1848 aa5.8□□□□□ -1.48
MCF2-201ENST00000338585 CCDC7Q96M83 1385 aa5.8□□□□□ -1.48
MCF2-201ENST00000338585 CFAP70Q5T0N1 1121 aa5.8□□□□□ -1.48
MCF2-201ENST00000338585 PPLO60437 1756 aa5.8□□□□□ -1.48
MCF2-201ENST00000338585 KIF7Q2M1P5 1343 aa5.8□□□□□ -1.48
MCF2-201ENST00000338585 SPATA31D1Q6ZQQ2 1576 aa5.8□□□□□ -1.48
MCF2-201ENST00000338585 CEBPAP49715 358 aaPredicted RBP5.8□□□□□ -1.48
MCF2-201ENST00000338585 NRXN1Q9ULB1 1477 aa5.8□□□□□ -1.48
MCF2-201ENST00000338585 TMEM131LA2VDJ0 1609 aa5.8□□□□□ -1.48
MCF2-201ENST00000338585 NEXMIFQ5QGS0 1516 aa5.8□□□□□ -1.48
MCF2-201ENST00000338585 STAC3Q96MF2 364 aa5.8□□□□□ -1.48
MCF2-201ENST00000338585 LAMC1P11047 1609 aa5.79□□□□□ -1.48
MCF2-201ENST00000338585 SLC24A1O60721 1099 aa5.79□□□□□ -1.48
MCF2-201ENST00000338585 LHX8Q68G74 356 aa5.79□□□□□ -1.48
MCF2-201ENST00000338585 POLR3GLQ9BT43 218 aa5.79□□□□□ -1.48
MCF2-201ENST00000338585 RPGRIP1LQ68CZ1 1315 aa5.78□□□□□ -1.48
MCF2-201ENST00000338585 PIK3C2GO75747 1445 aa5.78□□□□□ -1.48
MCF2-201ENST00000338585 PPP4R3CPQ6ZMV5 832 aa5.78□□□□□ -1.48
MCF2-201ENST00000338585 IQGAP1P46940 1657 aa5.78□□□□□ -1.48
MCF2-201ENST00000338585 TESK2Q96S53 571 aa5.78□□□□□ -1.48
MCF2-201ENST00000338585 STAG3Q9UJ98 1225 aa5.78□□□□□ -1.48
MCF2-201ENST00000338585 TNRQ92752 1358 aa5.78□□□□□ -1.48
MCF2-201ENST00000338585 POLR1AO95602 1720 aaPredicted RBP5.77□□□□□ -1.49
MCF2-201ENST00000338585 KIAA1210Q9ULL0 1709 aa5.77□□□□□ -1.49
MCF2-201ENST00000338585 A2ML1A8K2U0 1454 aa5.77□□□□□ -1.49
MCF2-201ENST00000338585 FER1L4A9Z1Z3 1794 aa5.77□□□□□ -1.49
MCF2-201ENST00000338585 SCAF11Q99590 1463 aaKnown RBP5.77□□□□□ -1.49
MCF2-201ENST00000338585 VGFO15240 615 aaPredicted RBP5.77□□□□□ -1.49
MCF2-201ENST00000338585 TMEM132EQ6IEE7 984 aa5.77□□□□□ -1.49
MCF2-201ENST00000338585 C3P01024 1663 aa5.76□□□□□ -1.49
MCF2-201ENST00000338585 C14orf93Q9H972 538 aaKnown RBP5.76□□□□□ -1.49
MCF2-201ENST00000338585 DISP3Q9P2K9 1392 aa5.76□□□□□ -1.49
MCF2-201ENST00000338585 ADGRB1O14514 1584 aa5.76□□□□□ -1.49
MCF2-201ENST00000338585 ZFYVE9O95405 1425 aa5.75□□□□□ -1.49
MCF2-201ENST00000338585 RIMS2Q9UQ26 1411 aa5.75□□□□□ -1.49
MCF2-201ENST00000338585 HAX1O00165 279 aa5.75□□□□□ -1.49
MCF2-201ENST00000338585 SPINK5Q9NQ38 1064 aaPredicted RBP5.75□□□□□ -1.49
MCF2-201ENST00000338585 TRAK1Q9UPV9 953 aa5.75□□□□□ -1.49
MCF2-201ENST00000338585 SETBP1Q9Y6X0 1596 aa5.75□□□□□ -1.49
MCF2-201ENST00000338585 RIMS1Q86UR5 1692 aaKnown RBP5.74□□□□□ -1.49
MCF2-201ENST00000338585 ASXL1Q8IXJ9 1541 aa5.74□□□□□ -1.49
MCF2-201ENST00000338585 ANP32CO43423 234 aa5.74□□□□□ -1.49
MCF2-201ENST00000338585 YTHDC1Q96MU7 727 aaKnown RBP5.74□□□□□ -1.49
MCF2-201ENST00000338585 UBR1Q8IWV7 1749 aa5.74□□□□□ -1.49
MCF2-201ENST00000338585 EIF3AQ14152 1382 aaKnown RBP5.73□□□□□ -1.49
MCF2-201ENST00000338585 TMF1P82094 1093 aa5.73□□□□□ -1.49
MCF2-201ENST00000338585 CNGB1Q14028 1251 aaPredicted RBP5.73□□□□□ -1.49
MCF2-201ENST00000338585 STK26Q9P289 416 aa5.73□□□□□ -1.49
MCF2-201ENST00000338585 PTPRMP28827 1452 aa5.73□□□□□ -1.49
MCF2-201ENST00000338585 NLRP1Q9C000 1473 aa5.73□□□□□ -1.49
MCF2-201ENST00000338585 ADAMTSL3P82987 1691 aa5.73□□□□□ -1.49
MCF2-201ENST00000338585 ALKQ9UM73 1620 aa5.73□□□□□ -1.49
MCF2-201ENST00000338585 TMEM2Q9UHN6 1383 aa5.73□□□□□ -1.49
MCF2-201ENST00000338585 CENPJQ9HC77 1338 aaPredicted RBP5.72□□□□□ -1.49
MCF2-201ENST00000338585 MYO3AQ8NEV4 1616 aa5.72□□□□□ -1.49
MCF2-201ENST00000338585 NRXN3Q9Y4C0 1643 aa5.72□□□□□ -1.49
MCF2-201ENST00000338585 ARHGEF28Q8N1W1 1705 aaKnown RBP5.71□□□□□ -1.49
MCF2-201ENST00000338585 LTKP29376 864 aa5.71□□□□□ -1.49
MCF2-201ENST00000338585 SAFB2Q14151 953 aaKnown RBP eCLIP5.71□□□□□ -1.49
MCF2-201ENST00000338585 KDM5AP29375 1690 aaKnown RBP5.71□□□□□ -1.49
MCF2-201ENST00000338585 QRICH2Q9H0J4 1663 aa5.71□□□□□ -1.5
MCF2-201ENST00000338585 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.71□□□□□ -1.5
MCF2-201ENST00000338585 PRKRIP1Q9H875 184 aaPredicted RBP5.71□□□□□ -1.5
MCF2-201ENST00000338585 SETD1AO15047 1707 aaKnown RBP5.71□□□□□ -1.5
MCF2-201ENST00000338585 YTHDC2Q9H6S0 1430 aaKnown RBP5.71□□□□□ -1.5
MCF2-201ENST00000338585 METP08581 1390 aa5.7□□□□□ -1.5
MCF2-201ENST00000338585 CCDC184Q52MB2 194 aa5.7□□□□□ -1.5
MCF2-201ENST00000338585 TXNDC2Q86VQ3 553 aa5.7□□□□□ -1.5
MCF2-201ENST00000338585 BCANQ96GW7 911 aa5.7□□□□□ -1.5
MCF2-201ENST00000338585 SBNO2Q9Y2G9 1366 aa5.7□□□□□ -1.5
MCF2-201ENST00000338585 CCER2I3L3R5 266 aa5.7□□□□□ -1.5
MCF2-201ENST00000338585 PRAM1Q96QH2 718 aa5.7□□□□□ -1.5
MCF2-201ENST00000338585 PANK3Q9H999 370 aa5.7□□□□□ -1.5
MCF2-201ENST00000338585 MYOM1P52179 1685 aa5.69□□□□□ -1.5
MCF2-201ENST00000338585 CEP170BQ9Y4F5 1589 aaPredicted RBP5.69□□□□□ -1.5
MCF2-201ENST00000338585 ARHGAP23Q9P227 1491 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms