RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 BCORL1Q5H9F3 1711 aa15.22■□□□□ 0.03
SHMT2-201ENST00000328923 PNISRQ8TF01 805 aaKnown RBP15.21■□□□□ 0.03
SHMT2-201ENST00000328923 MYH16Q9H6N6 1097 aa15.21■□□□□ 0.03
SHMT2-201ENST00000328923 ZFP91Q96JP5 570 aaPredicted RBP15.2■□□□□ 0.02
SHMT2-201ENST00000328923 KDM5CP41229 1560 aa15.2■□□□□ 0.02
SHMT2-201ENST00000328923 ANP32BQ92688 251 aaKnown RBP15.19■□□□□ 0.02
SHMT2-201ENST00000328923 SLKQ9H2G2 1235 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-201ENST00000328923 C8orf34Q49A92 452 aa15.19■□□□□ 0.02
SHMT2-201ENST00000328923 ADGRL2O95490 1459 aa15.19■□□□□ 0.02
SHMT2-201ENST00000328923 FTSJ3Q8IY81 847 aaKnown RBP15.18■□□□□ 0.02
SHMT2-201ENST00000328923 DHX37Q8IY37 1157 aaKnown RBP15.18■□□□□ 0.02
SHMT2-201ENST00000328923 TRIM44Q96DX7 344 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-201ENST00000328923 BRD4O60885 1362 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-201ENST00000328923 ZSCAN20P17040 1043 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-201ENST00000328923 MRE11P49959 708 aa15.17■□□□□ 0.02
SHMT2-201ENST00000328923 CDC42BPBQ9Y5S2 1711 aa15.17■□□□□ 0.02
SHMT2-201ENST00000328923 PREX2Q70Z35 1606 aa15.17■□□□□ 0.02
SHMT2-201ENST00000328923 FAM161AQ3B820 660 aa15.16■□□□□ 0.02
SHMT2-201ENST00000328923 USP47Q96K76 1375 aa15.16■□□□□ 0.02
SHMT2-201ENST00000328923 PDE3BQ13370 1112 aa15.15■□□□□ 0.02
SHMT2-201ENST00000328923 KIF15Q9NS87 1388 aa15.15■□□□□ 0.02
SHMT2-201ENST00000328923 SHANK2Q9UPX8 1470 aa15.15■□□□□ 0.02
SHMT2-201ENST00000328923 GRPEL1Q9HAV7 217 aa15.14■□□□□ 0.01
SHMT2-201ENST00000328923 E9PCH4 1651 aa15.14■□□□□ 0.01
SHMT2-201ENST00000328923 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.14■□□□□ 0.01
SHMT2-201ENST00000328923 ANKRD30AQ9BXX3 1397 aa15.14■□□□□ 0.01
SHMT2-201ENST00000328923 WDR7Q9Y4E6 1490 aa15.14■□□□□ 0.01
SHMT2-201ENST00000328923 TTC37Q6PGP7 1564 aa15.14■□□□□ 0.01
SHMT2-201ENST00000328923 OFD1O75665 1012 aa15.13■□□□□ 0.01
SHMT2-201ENST00000328923 SAMD9LQ8IVG5 1584 aa15.13■□□□□ 0.01
SHMT2-201ENST00000328923 TMC1Q8TDI8 760 aa15.13■□□□□ 0.01
SHMT2-201ENST00000328923 ZMYM4Q5VZL5 1548 aa15.13■□□□□ 0.01
SHMT2-201ENST00000328923 ARHGEF5Q12774 1597 aa15.12■□□□□ 0.01
SHMT2-201ENST00000328923 AMER1Q5JTC6 1135 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-201ENST00000328923 RCAN3Q9UKA8 241 aa15.12■□□□□ 0.01
SHMT2-201ENST00000328923 C9orf84Q5VXU9 1444 aa15.12■□□□□ 0.01
SHMT2-201ENST00000328923 INSRP06213 1382 aa15.11■□□□□ 0.01
SHMT2-201ENST00000328923 NCBP3Q53F19 620 aaKnown RBP15.11■□□□□ 0.01
SHMT2-201ENST00000328923 UHRF1BP1Q6BDS2 1440 aa15.11■□□□□ 0.01
SHMT2-201ENST00000328923 ASXL2Q76L83 1435 aa15.11■□□□□ 0.01
SHMT2-201ENST00000328923 RALGAPBQ86X10 1494 aa15.11■□□□□ 0.01
SHMT2-201ENST00000328923 MYBBP1AQ9BQG0 1328 aaKnown RBP15.11■□□□□ 0.01
SHMT2-201ENST00000328923 R3HCC1Q9Y3T6 440 aaKnown RBP15.1■□□□□ 0.01
SHMT2-201ENST00000328923 TNNT2P45379 298 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-201ENST00000328923 HNRNPMP52272 730 aaKnown RBP eCLIP15.1■□□□□ 0.01
SHMT2-201ENST00000328923 RALBP1Q15311 655 aa15.1■□□□□ 0.01
SHMT2-201ENST00000328923 SECISBP2LQ93073 1101 aaKnown RBP15.1■□□□□ 0.01
SHMT2-201ENST00000328923 PZPP20742 1482 aa15.09■□□□□ 0.01
SHMT2-201ENST00000328923 MYO5CQ9NQX4 1742 aa15.09■□□□□ 0.01
SHMT2-201ENST00000328923 ZBTB22O15209 634 aa15.09■□□□□ 0.01
SHMT2-201ENST00000328923 BRD2P25440 801 aaKnown RBP15.09■□□□□ 0.01
SHMT2-201ENST00000328923 TERF1P54274 439 aa15.09■□□□□ 0.01
SHMT2-201ENST00000328923 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-201ENST00000328923 ANTXR1Q9H6X2 564 aa15.09■□□□□ 0.01
SHMT2-201ENST00000328923 ANKRD50Q9ULJ7 1429 aa15.09■□□□□ 0.01
SHMT2-201ENST00000328923 TSPY4P0CV99 314 aa15.08■□□□□ 0.01
SHMT2-201ENST00000328923 TSPY10P0CW01 314 aa15.08■□□□□ 0.01
SHMT2-201ENST00000328923 SLC4A1APQ9BWU0 796 aaKnown RBP15.08■□□□□ 0.01
SHMT2-201ENST00000328923 ARHGAP5Q13017 1502 aa15.08■□□□□ 0
SHMT2-201ENST00000328923 ABCA9Q8IUA7 1624 aa15.08■□□□□ 0
SHMT2-201ENST00000328923 UQCRHLA0A096LP55 91 aa15.07■□□□□ 0
SHMT2-201ENST00000328923 PLIN1O60240 522 aa15.07■□□□□ 0
SHMT2-201ENST00000328923 UQCRHP07919 91 aa15.07■□□□□ 0
SHMT2-201ENST00000328923 CCDC141Q6ZP82 1450 aa15.07■□□□□ 0
SHMT2-201ENST00000328923 ARHGEF12Q9NZN5 1544 aa15.07■□□□□ 0
SHMT2-201ENST00000328923 KIF20AO95235 890 aa15.06■□□□□ 0
SHMT2-201ENST00000328923 MTERF4Q7Z6M4 381 aaKnown RBP15.06■□□□□ 0
SHMT2-201ENST00000328923 TEX2Q8IWB9 1127 aa15.06■□□□□ 0
SHMT2-201ENST00000328923 CRBNQ96SW2 442 aa15.06■□□□□ 0
SHMT2-201ENST00000328923 KIAA1107Q9UPP5 1409 aa15.05■□□□□ 0
SHMT2-201ENST00000328923 TRAK2O60296 914 aa15.05■□□□□ 0
SHMT2-201ENST00000328923 MCM4P33991 863 aa15.05■□□□□ 0
SHMT2-201ENST00000328923 CCDC94Q9BW85 323 aaPredicted RBP15.05■□□□□ 0
SHMT2-201ENST00000328923 SYCP2Q9BX26 1530 aa15.05■□□□□ -0
SHMT2-201ENST00000328923 PPRC1Q5VV67 1664 aaKnown RBP15.05■□□□□ -0
SHMT2-201ENST00000328923 CHMP4AQ9BY43 222 aa15.05■□□□□ -0
SHMT2-201ENST00000328923 ARAP3Q8WWN8 1544 aa15.05■□□□□ -0
SHMT2-201ENST00000328923 PLEKHH2Q8IVE3 1493 aa15.05■□□□□ -0
SHMT2-201ENST00000328923 MAPK8IP2Q13387 824 aaPredicted RBP15.04■□□□□ -0
SHMT2-201ENST00000328923 USP19O94966 1318 aa15.03■□□□□ -0
SHMT2-201ENST00000328923 KDM2BQ8NHM5 1336 aa15.03■□□□□ -0
SHMT2-201ENST00000328923 BECN1Q14457 450 aa15.03■□□□□ -0
SHMT2-201ENST00000328923 ZSCAN30Q86W11 494 aa15.03■□□□□ -0
SHMT2-201ENST00000328923 GTPBP4Q9BZE4 634 aaKnown RBP15.03■□□□□ -0
SHMT2-201ENST00000328923 PLCH2O75038 1416 aa15.03■□□□□ -0
SHMT2-201ENST00000328923 GLI2P10070 1586 aa15.03■□□□□ -0
SHMT2-201ENST00000328923 CHRM1P11229 460 aaPredicted RBP15.02■□□□□ -0
SHMT2-201ENST00000328923 LETM1O95202 739 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-201ENST00000328923 MAST1Q9Y2H9 1570 aa15.01□□□□□ -0.01
SHMT2-201ENST00000328923 PARD3Q8TEW0 1356 aa15.01□□□□□ -0.01
SHMT2-201ENST00000328923 CDK11BP21127 795 aaKnown RBP15□□□□□ -0.01
SHMT2-201ENST00000328923 BLMP54132 1417 aaPredicted RBP15□□□□□ -0.01
SHMT2-201ENST00000328923 NLRP13Q86W25 1043 aa15□□□□□ -0.01
SHMT2-201ENST00000328923 E9PSI1 815 aa14.99□□□□□ -0.01
SHMT2-201ENST00000328923 DYNC1I1O14576 645 aa14.99□□□□□ -0.01
SHMT2-201ENST00000328923 GAS2L3Q86XJ1 694 aa14.99□□□□□ -0.01
SHMT2-201ENST00000328923 KDM5DQ9BY66 1539 aa14.99□□□□□ -0.01
SHMT2-201ENST00000328923 KDM4FA0A1W2PPD8 638 aa14.99□□□□□ -0.01
SHMT2-201ENST00000328923 MSNP26038 577 aaKnown RBP14.99□□□□□ -0.01
SHMT2-201ENST00000328923 DNTTIP2Q5QJE6 756 aaKnown RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms