RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 TMEM132EQ6IEE7 984 aa16.82■□□□□ 0.28
RNF4-201ENST00000314289 ZBED9Q6R2W3 1325 aa16.82■□□□□ 0.28
RNF4-201ENST00000314289 NOS1P29475 1434 aa16.81■□□□□ 0.28
RNF4-201ENST00000314289 MROH2AA6NES4 1674 aa16.81■□□□□ 0.28
RNF4-201ENST00000314289 KTN1Q86UP2 1357 aaKnown RBP16.81■□□□□ 0.28
RNF4-201ENST00000314289 RALBP1Q15311 655 aa16.81■□□□□ 0.28
RNF4-201ENST00000314289 BCL11AQ9H165 835 aa16.8■□□□□ 0.28
RNF4-201ENST00000314289 TRAK1Q9UPV9 953 aa16.8■□□□□ 0.28
RNF4-201ENST00000314289 RBM19Q9Y4C8 960 aaKnown RBP16.8■□□□□ 0.28
RNF4-201ENST00000314289 KIF1BO60333 1816 aa16.8■□□□□ 0.28
RNF4-201ENST00000314289 LAMC1P11047 1609 aa16.79■□□□□ 0.28
RNF4-201ENST00000314289 SCAF11Q99590 1463 aaKnown RBP16.79■□□□□ 0.28
RNF4-201ENST00000314289 DIP2CQ9Y2E4 1556 aa16.78■□□□□ 0.28
RNF4-201ENST00000314289 MLECQ14165 292 aa16.78■□□□□ 0.28
RNF4-201ENST00000314289 ABCC3O15438 1527 aa16.77■□□□□ 0.28
RNF4-201ENST00000314289 MAP3K4Q9Y6R4 1608 aa16.77■□□□□ 0.28
RNF4-201ENST00000314289 FBXO31Q5XUX0 539 aaPredicted RBP16.76■□□□□ 0.27
RNF4-201ENST00000314289 RICTORQ6R327 1708 aa16.76■□□□□ 0.27
RNF4-201ENST00000314289 LMTK2Q8IWU2 1503 aa16.76■□□□□ 0.27
RNF4-201ENST00000314289 IQGAP1P46940 1657 aa16.76■□□□□ 0.27
RNF4-201ENST00000314289 PARD3Q8TEW0 1356 aa16.75■□□□□ 0.27
RNF4-201ENST00000314289 IDI1Q13907 227 aa16.75■□□□□ 0.27
RNF4-201ENST00000314289 NLRP13Q86W25 1043 aa16.75■□□□□ 0.27
RNF4-201ENST00000314289 STAC3Q96MF2 364 aa16.75■□□□□ 0.27
RNF4-201ENST00000314289 KNSTRNQ9Y448 316 aa16.75■□□□□ 0.27
RNF4-201ENST00000314289 BRD4O60885 1362 aaPredicted RBP16.74■□□□□ 0.27
RNF4-201ENST00000314289 SIGLEC1Q9BZZ2 1709 aa16.73■□□□□ 0.27
RNF4-201ENST00000314289 SAFB2Q14151 953 aaKnown RBP eCLIP16.73■□□□□ 0.27
RNF4-201ENST00000314289 EIF3AQ14152 1382 aaKnown RBP16.72■□□□□ 0.27
RNF4-201ENST00000314289 ADGRB3O60242 1522 aa16.71■□□□□ 0.26
RNF4-201ENST00000314289 CAMSAP1Q5T5Y3 1602 aa16.71■□□□□ 0.26
RNF4-201ENST00000314289 DIP2BQ9P265 1576 aa16.7■□□□□ 0.26
RNF4-201ENST00000314289 MYOM2P54296 1465 aa16.7■□□□□ 0.26
RNF4-201ENST00000314289 CDCA8Q53HL2 280 aa16.69■□□□□ 0.26
RNF4-201ENST00000314289 STK26Q9P289 416 aa16.69■□□□□ 0.26
RNF4-201ENST00000314289 AMER1Q5JTC6 1135 aaPredicted RBP16.68■□□□□ 0.26
RNF4-201ENST00000314289 C14orf93Q9H972 538 aaKnown RBP16.68■□□□□ 0.26
RNF4-201ENST00000314289 IFT172Q9UG01 1749 aa16.68■□□□□ 0.26
RNF4-201ENST00000314289 LRPPRCP42704 1394 aaKnown RBP16.67■□□□□ 0.26
RNF4-201ENST00000314289 SYNMO15061 1565 aa16.67■□□□□ 0.26
RNF4-201ENST00000314289 CENPJQ9HC77 1338 aaPredicted RBP16.67■□□□□ 0.26
RNF4-201ENST00000314289 GLI2P10070 1586 aa16.66■□□□□ 0.26
RNF4-201ENST00000314289 ERVK-7P63135 1459 aa16.66■□□□□ 0.26
RNF4-201ENST00000314289 PIK3C2GO75747 1445 aa16.65■□□□□ 0.26
RNF4-201ENST00000314289 NUDCQ9Y266 331 aa16.65■□□□□ 0.26
RNF4-201ENST00000314289 PPP2R1AP30153 589 aa16.65■□□□□ 0.26
RNF4-201ENST00000314289 CARD14Q9BXL6 1004 aa16.65■□□□□ 0.26
RNF4-201ENST00000314289 STAG3Q9UJ98 1225 aa16.64■□□□□ 0.25
RNF4-201ENST00000314289 NRXN1Q9ULB1 1477 aa16.64■□□□□ 0.25
RNF4-201ENST00000314289 SLC12A5Q9H2X9 1139 aa16.64■□□□□ 0.25
RNF4-201ENST00000314289 PPLO60437 1756 aa16.64■□□□□ 0.25
RNF4-201ENST00000314289 VGFO15240 615 aaPredicted RBP16.64■□□□□ 0.25
RNF4-201ENST00000314289 KIAA1210Q9ULL0 1709 aa16.63■□□□□ 0.25
RNF4-201ENST00000314289 TNNT2P45379 298 aaPredicted RBP16.63■□□□□ 0.25
RNF4-201ENST00000314289 NEURL4Q96JN8 1562 aa16.63■□□□□ 0.25
RNF4-201ENST00000314289 CDCA7LQ96GN5 454 aa16.63■□□□□ 0.25
RNF4-201ENST00000314289 ADAMTS8Q9UP79 889 aa16.63■□□□□ 0.25
RNF4-201ENST00000314289 B4GALNT3Q6L9W6 998 aa16.61■□□□□ 0.25
RNF4-201ENST00000314289 SMG6Q86US8 1419 aaKnown RBP16.61■□□□□ 0.25
RNF4-201ENST00000314289 RPGRIP1LQ68CZ1 1315 aa16.61■□□□□ 0.25
RNF4-201ENST00000314289 MYOM1P52179 1685 aa16.6■□□□□ 0.25
RNF4-201ENST00000314289 MSH5O43196 834 aa16.6■□□□□ 0.25
RNF4-201ENST00000314289 SLC52A1Q9NWF4 448 aa16.6■□□□□ 0.25
RNF4-201ENST00000314289 MYO5BQ9ULV0 1848 aa16.6■□□□□ 0.25
RNF4-201ENST00000314289 KDM5AP29375 1690 aaKnown RBP16.6■□□□□ 0.25
RNF4-201ENST00000314289 ADGRB1O14514 1584 aa16.58■□□□□ 0.24
RNF4-201ENST00000314289 CABP2Q9NPB3 220 aa16.58■□□□□ 0.24
RNF4-201ENST00000314289 NEXMIFQ5QGS0 1516 aa16.58■□□□□ 0.24
RNF4-201ENST00000314289 ARHGAP31Q2M1Z3 1444 aa16.58■□□□□ 0.24
RNF4-201ENST00000314289 ASXL1Q8IXJ9 1541 aa16.57■□□□□ 0.24
RNF4-201ENST00000314289 PIK3C2BO00750 1634 aa16.57■□□□□ 0.24
RNF4-201ENST00000314289 WDR43Q15061 677 aaKnown RBP eCLIP16.57■□□□□ 0.24
RNF4-201ENST00000314289 PLPPR3Q6T4P5 718 aa16.57■□□□□ 0.24
RNF4-201ENST00000314289 CCDC146Q8IYE0 955 aa16.57■□□□□ 0.24
RNF4-201ENST00000314289 PREX1Q8TCU6 1659 aa16.55■□□□□ 0.24
RNF4-201ENST00000314289 ZMYM4Q5VZL5 1548 aa16.55■□□□□ 0.24
RNF4-201ENST00000314289 ERICH6Q7L0X2 663 aa16.55■□□□□ 0.24
RNF4-201ENST00000314289 MINK1Q8N4C8 1332 aaPredicted RBP16.54■□□□□ 0.24
RNF4-201ENST00000314289 PPP4R2Q9NY27 417 aa16.54■□□□□ 0.24
RNF4-201ENST00000314289 QRICH2Q9H0J4 1663 aa16.53■□□□□ 0.24
RNF4-201ENST00000314289 SETBP1Q9Y6X0 1596 aa16.53■□□□□ 0.24
RNF4-201ENST00000314289 ZC3H13Q5T200 1668 aaKnown RBP16.53■□□□□ 0.24
RNF4-201ENST00000314289 ESF1Q9H501 851 aaKnown RBP16.52■□□□□ 0.24
RNF4-201ENST00000314289 NSD3Q9BZ95 1437 aa16.52■□□□□ 0.24
RNF4-201ENST00000314289 SRPK2P78362 688 aaKnown RBP16.52■□□□□ 0.23
RNF4-201ENST00000314289 PRAM1Q96QH2 718 aa16.52■□□□□ 0.23
RNF4-201ENST00000314289 CLTCQ00610 1675 aaKnown RBP16.52■□□□□ 0.23
RNF4-201ENST00000314289 KIF13AQ9H1H9 1805 aa16.51■□□□□ 0.23
RNF4-201ENST00000314289 SLC24A1O60721 1099 aa16.51■□□□□ 0.23
RNF4-201ENST00000314289 POGKQ9P215 609 aa16.51■□□□□ 0.23
RNF4-201ENST00000314289 SBNO2Q9Y2G9 1366 aa16.5■□□□□ 0.23
RNF4-201ENST00000314289 TMEM131LA2VDJ0 1609 aa16.5■□□□□ 0.23
RNF4-201ENST00000314289 EVC2Q86UK5 1308 aa16.49■□□□□ 0.23
RNF4-201ENST00000314289 MORC1Q86VD1 984 aa16.49■□□□□ 0.23
RNF4-201ENST00000314289 MYO3AQ8NEV4 1616 aa16.49■□□□□ 0.23
RNF4-201ENST00000314289 RCAN3Q9UKA8 241 aa16.49■□□□□ 0.23
RNF4-201ENST00000314289 BLMP54132 1417 aaPredicted RBP16.48■□□□□ 0.23
RNF4-201ENST00000314289 PLIN1O60240 522 aa16.48■□□□□ 0.23
RNF4-201ENST00000314289 WAPLQ7Z5K2 1190 aa16.47■□□□□ 0.23
RNF4-201ENST00000314289 PLEKHH1Q9ULM0 1364 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms