RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 RCAN3Q9UKA8 241 aa4.94□□□□□ -1.62
USH2A-201ENST00000307340 TPM1P09493 284 aa4.94□□□□□ -1.62
USH2A-201ENST00000307340 SHANK2Q9UPX8 1470 aa4.94□□□□□ -1.62
USH2A-201ENST00000307340 KIAA0586Q9BVV6 1533 aa4.94□□□□□ -1.62
USH2A-201ENST00000307340 TEX35Q5T0J7 233 aa4.94□□□□□ -1.62
USH2A-201ENST00000307340 ANKRD20A12PQ8NF67 263 aa4.94□□□□□ -1.62
USH2A-201ENST00000307340 CPLX2Q6PUV4 134 aaKnown RBP4.94□□□□□ -1.62
USH2A-201ENST00000307340 NOM1Q5C9Z4 860 aaKnown RBP4.94□□□□□ -1.62
USH2A-201ENST00000307340 UHRF1BP1Q6BDS2 1440 aa4.94□□□□□ -1.62
USH2A-201ENST00000307340 WDR7Q9Y4E6 1490 aa4.94□□□□□ -1.62
USH2A-201ENST00000307340 TUBB4AP04350 444 aa4.94□□□□□ -1.62
USH2A-201ENST00000307340 PUS7Q96PZ0 661 aaKnown RBP4.94□□□□□ -1.62
USH2A-201ENST00000307340 HSP90AB1P08238 724 aaKnown RBP4.94□□□□□ -1.62
USH2A-201ENST00000307340 NUP155O75694 1391 aa4.93□□□□□ -1.62
USH2A-201ENST00000307340 SUPT16HQ9Y5B9 1047 aaKnown RBP4.93□□□□□ -1.62
USH2A-201ENST00000307340 SLC52A1Q9NWF4 448 aa4.93□□□□□ -1.62
USH2A-201ENST00000307340 FAM135AQ9P2D6 1515 aa4.93□□□□□ -1.62
USH2A-201ENST00000307340 TSR1Q2NL82 804 aaKnown RBP4.93□□□□□ -1.62
USH2A-201ENST00000307340 EID1Q9Y6B2 187 aa4.93□□□□□ -1.62
USH2A-201ENST00000307340 MPHOSPH9Q99550 1183 aa4.93□□□□□ -1.62
USH2A-201ENST00000307340 SRCIN1Q9C0H9 1055 aa4.93□□□□□ -1.62
USH2A-201ENST00000307340 MYO5CQ9NQX4 1742 aa4.93□□□□□ -1.62
USH2A-201ENST00000307340 PAXIP1Q6ZW49 1069 aaPredicted RBP4.93□□□□□ -1.62
USH2A-201ENST00000307340 STK31Q9BXU1 1019 aa4.93□□□□□ -1.62
USH2A-201ENST00000307340 ANKRD50Q9ULJ7 1429 aa4.93□□□□□ -1.62
USH2A-201ENST00000307340 DIAPH3Q9NSV4 1193 aa4.93□□□□□ -1.62
USH2A-201ENST00000307340 HSP90AA2PQ14568 343 aaPredicted RBP4.93□□□□□ -1.62
USH2A-201ENST00000307340 CWC22Q9HCG8 908 aaKnown RBP4.92□□□□□ -1.62
USH2A-201ENST00000307340 POGKQ9P215 609 aa4.92□□□□□ -1.62
USH2A-201ENST00000307340 PDE3AQ14432 1141 aa4.92□□□□□ -1.62
USH2A-201ENST00000307340 DHX16O60231 1041 aaKnown RBP4.92□□□□□ -1.62
USH2A-201ENST00000307340 IPO7O95373 1038 aaKnown RBP4.92□□□□□ -1.62
USH2A-201ENST00000307340 CNPY4Q8N129 248 aa4.92□□□□□ -1.62
USH2A-201ENST00000307340 RBM19Q9Y4C8 960 aaKnown RBP4.92□□□□□ -1.62
USH2A-201ENST00000307340 EPRSP07814 1512 aaKnown RBP4.92□□□□□ -1.62
USH2A-201ENST00000307340 PDCL2Q8N4E4 241 aa4.92□□□□□ -1.62
USH2A-201ENST00000307340 RALGAPBQ86X10 1494 aa4.92□□□□□ -1.62
USH2A-201ENST00000307340 FAM161AQ3B820 660 aa4.92□□□□□ -1.62
USH2A-201ENST00000307340 GTPBP4Q9BZE4 634 aaKnown RBP4.92□□□□□ -1.62
USH2A-201ENST00000307340 LUC7LQ9NQ29 371 aaKnown RBP4.92□□□□□ -1.62
USH2A-201ENST00000307340 MBD3O95983 291 aa4.92□□□□□ -1.62
USH2A-201ENST00000307340 ERCC4Q92889 916 aaPredicted RBP4.92□□□□□ -1.62
USH2A-201ENST00000307340 SHROOM2Q13796 1616 aa4.92□□□□□ -1.62
USH2A-201ENST00000307340 POGZQ7Z3K3 1410 aa4.92□□□□□ -1.62
USH2A-201ENST00000307340 USP47Q96K76 1375 aa4.92□□□□□ -1.62
USH2A-201ENST00000307340 SMG6Q86US8 1419 aaKnown RBP4.91□□□□□ -1.62
USH2A-201ENST00000307340 KIF2AO00139 706 aaPredicted RBP4.91□□□□□ -1.62
USH2A-201ENST00000307340 FGD1P98174 961 aa4.91□□□□□ -1.62
USH2A-201ENST00000307340 TROQ12816 1431 aaPredicted RBP4.91□□□□□ -1.62
USH2A-201ENST00000307340 MCM3P25205 808 aa4.91□□□□□ -1.62
USH2A-201ENST00000307340 CIZ1Q9ULV3 898 aaPredicted RBP4.91□□□□□ -1.62
USH2A-201ENST00000307340 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.91□□□□□ -1.62
USH2A-201ENST00000307340 TSPYL1Q9H0U9 437 aa4.91□□□□□ -1.62
USH2A-201ENST00000307340 IQCEQ6IPM2 695 aa4.91□□□□□ -1.62
USH2A-201ENST00000307340 FMNL3Q8IVF7 1028 aa4.91□□□□□ -1.62
USH2A-201ENST00000307340 DUOX2Q9NRD8 1548 aa4.91□□□□□ -1.62
USH2A-201ENST00000307340 ZKSCAN1P17029 563 aaPredicted RBP4.91□□□□□ -1.62
USH2A-201ENST00000307340 AMOTL1Q8IY63 956 aa4.91□□□□□ -1.62
USH2A-201ENST00000307340 MIER1Q8N108 512 aa4.9□□□□□ -1.62
USH2A-201ENST00000307340 ANKRD1Q15327 319 aa4.9□□□□□ -1.62
USH2A-201ENST00000307340 RAPGEF6Q8TEU7 1601 aa4.9□□□□□ -1.62
USH2A-201ENST00000307340 ARGLU1Q9NWB6 273 aaPredicted RBP4.9□□□□□ -1.62
USH2A-201ENST00000307340 AEBP1Q8IUX7 1158 aa4.9□□□□□ -1.62
USH2A-201ENST00000307340 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.9□□□□□ -1.62
USH2A-201ENST00000307340 ABCC11Q96J66 1382 aa4.9□□□□□ -1.62
USH2A-201ENST00000307340 CWC15Q9P013 229 aaKnown RBP4.9□□□□□ -1.62
USH2A-201ENST00000307340 POLR3GO15318 223 aaPredicted RBP4.9□□□□□ -1.63
USH2A-201ENST00000307340 KCNJ4P48050 445 aa4.9□□□□□ -1.63
USH2A-201ENST00000307340 TOPBP1Q92547 1522 aa4.9□□□□□ -1.63
USH2A-201ENST00000307340 U2SURPO15042 1029 aaKnown RBP4.9□□□□□ -1.63
USH2A-201ENST00000307340 CCDC47Q96A33 483 aaKnown RBP4.9□□□□□ -1.63
USH2A-201ENST00000307340 ERBINQ96RT1 1412 aa4.9□□□□□ -1.63
USH2A-201ENST00000307340 PLXNC1O60486 1568 aa4.9□□□□□ -1.63
USH2A-201ENST00000307340 A6NNZ2 444 aa4.9□□□□□ -1.63
USH2A-201ENST00000307340 TUBB8Q3ZCM7 444 aa4.9□□□□□ -1.63
USH2A-201ENST00000307340 DCAF11Q8TEB1 546 aa4.9□□□□□ -1.63
USH2A-201ENST00000307340 PYM1Q9BRP8 204 aaKnown RBP4.9□□□□□ -1.63
USH2A-201ENST00000307340 ZNF692Q9BU19 519 aaPredicted RBP4.9□□□□□ -1.63
USH2A-201ENST00000307340 TUBBP07437 444 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 XBP1P17861 261 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 ERC2O15083 957 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 PSMA5P28066 241 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 ARHGAP5Q13017 1502 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 DNMT1P26358 1616 aaKnown RBP4.89□□□□□ -1.63
USH2A-201ENST00000307340 MCM5P33992 734 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 KIAA1107Q9UPP5 1409 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 NEXNQ0ZGT2 675 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 DCTN1Q14203 1278 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 CCDC66A2RUB6 948 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 TICAM2Q86XR7 235 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 API5Q9BZZ5 524 aaKnown RBP4.89□□□□□ -1.63
USH2A-201ENST00000307340 DDX58O95786 925 aaKnown RBP4.89□□□□□ -1.63
USH2A-201ENST00000307340 MORC1Q86VD1 984 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 INTS3Q68E01 1043 aaKnown RBP4.89□□□□□ -1.63
USH2A-201ENST00000307340 FAM107BQ9H098 131 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 PTPRGP23470 1445 aa4.89□□□□□ -1.63
USH2A-201ENST00000307340 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.89□□□□□ -1.63
USH2A-201ENST00000307340 RPRD2Q5VT52 1461 aaKnown RBP4.88□□□□□ -1.63
USH2A-201ENST00000307340 NT5C2P49902 561 aa4.88□□□□□ -1.63
USH2A-201ENST00000307340 TMED8Q6PL24 325 aaPredicted RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms