RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 STK11IPQ8N1F8 1099 aa6.42□□□□□ -1.38
SCN1A-201ENST00000303395 TXLNBQ8N3L3 684 aa6.42□□□□□ -1.38
SCN1A-201ENST00000303395 NSD2O96028 1365 aa6.42□□□□□ -1.38
SCN1A-201ENST00000303395 PDE4AP27815 886 aa6.42□□□□□ -1.38
SCN1A-201ENST00000303395 NOL10Q9BSC4 688 aaKnown RBP6.42□□□□□ -1.38
SCN1A-201ENST00000303395 TCEAL9Q9UHQ7 104 aa6.42□□□□□ -1.38
SCN1A-201ENST00000303395 ABCC11Q96J66 1382 aa6.42□□□□□ -1.38
SCN1A-201ENST00000303395 ERCC4Q92889 916 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-201ENST00000303395 GPATCH3Q96I76 525 aa6.41□□□□□ -1.38
SCN1A-201ENST00000303395 USP47Q96K76 1375 aa6.41□□□□□ -1.38
SCN1A-201ENST00000303395 CDR1P51861 262 aa6.41□□□□□ -1.38
SCN1A-201ENST00000303395 HSPA5P11021 654 aaKnown RBP6.41□□□□□ -1.38
SCN1A-201ENST00000303395 HSP90B1P14625 803 aaKnown RBP6.41□□□□□ -1.38
SCN1A-201ENST00000303395 CCDC70Q6NSX1 233 aa6.41□□□□□ -1.38
SCN1A-201ENST00000303395 UHRF1BP1Q6BDS2 1440 aa6.41□□□□□ -1.38
SCN1A-201ENST00000303395 TUBBP07437 444 aa6.41□□□□□ -1.38
SCN1A-201ENST00000303395 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.41□□□□□ -1.38
SCN1A-201ENST00000303395 CTR9Q6PD62 1173 aa6.41□□□□□ -1.38
SCN1A-201ENST00000303395 UBE2Q2Q8WVN8 375 aa6.4□□□□□ -1.38
SCN1A-201ENST00000303395 DCAF8L1A6NGE4 600 aa6.4□□□□□ -1.38
SCN1A-201ENST00000303395 PDCP20941 246 aa6.4□□□□□ -1.38
SCN1A-201ENST00000303395 POLR3GO15318 223 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-201ENST00000303395 NEMFO60524 1076 aa6.4□□□□□ -1.38
SCN1A-201ENST00000303395 G3V3G9 751 aa6.4□□□□□ -1.38
SCN1A-201ENST00000303395 DCAF8Q5TAQ9 597 aa6.4□□□□□ -1.38
SCN1A-201ENST00000303395 MPHOSPH9Q99550 1183 aa6.4□□□□□ -1.38
SCN1A-201ENST00000303395 PUS7Q96PZ0 661 aaKnown RBP6.4□□□□□ -1.39
SCN1A-201ENST00000303395 PATL2C9JE40 543 aaKnown RBP6.39□□□□□ -1.39
SCN1A-201ENST00000303395 EPB41L2O43491 1005 aaKnown RBP6.39□□□□□ -1.39
SCN1A-201ENST00000303395 RABEP1Q15276 862 aa6.39□□□□□ -1.39
SCN1A-201ENST00000303395 PDCL3Q9H2J4 239 aa6.39□□□□□ -1.39
SCN1A-201ENST00000303395 SNAPC4Q5SXM2 1469 aa6.39□□□□□ -1.39
SCN1A-201ENST00000303395 EIF4G1Q04637 1599 aaKnown RBP6.39□□□□□ -1.39
SCN1A-201ENST00000303395 CFAP43Q8NDM7 1665 aa6.39□□□□□ -1.39
SCN1A-201ENST00000303395 NPC1L1Q9UHC9 1359 aa6.39□□□□□ -1.39
SCN1A-201ENST00000303395 HSP90AB4PQ58FF6 505 aa6.39□□□□□ -1.39
SCN1A-201ENST00000303395 TERF2IPQ9NYB0 399 aa6.39□□□□□ -1.39
SCN1A-201ENST00000303395 DNMBPQ6XZF7 1577 aa6.39□□□□□ -1.39
SCN1A-201ENST00000303395 PIP4K2AP48426 406 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-201ENST00000303395 GON4LQ3T8J9 2241 aa6.38□□□□□ -1.39
SCN1A-201ENST00000303395 SHANK2Q9UPX8 1470 aa6.38□□□□□ -1.39
SCN1A-201ENST00000303395 TSR1Q2NL82 804 aaKnown RBP6.38□□□□□ -1.39
SCN1A-201ENST00000303395 API5Q9BZZ5 524 aaKnown RBP6.38□□□□□ -1.39
SCN1A-201ENST00000303395 KIAA1107Q9UPP5 1409 aa6.38□□□□□ -1.39
SCN1A-201ENST00000303395 RASSF8Q8NHQ8 419 aa6.38□□□□□ -1.39
SCN1A-201ENST00000303395 HOOK1Q9UJC3 728 aaKnown RBP6.38□□□□□ -1.39
SCN1A-201ENST00000303395 PPP6R1Q9UPN7 881 aa6.38□□□□□ -1.39
SCN1A-201ENST00000303395 U2SURPO15042 1029 aaKnown RBP6.38□□□□□ -1.39
SCN1A-201ENST00000303395 VPS53Q5VIR6 699 aa6.38□□□□□ -1.39
SCN1A-201ENST00000303395 ZNF777Q9ULD5 760 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-201ENST00000303395 ABCA10Q8WWZ4 1543 aa6.38□□□□□ -1.39
SCN1A-201ENST00000303395 HMGB1P09429 215 aaKnown RBP6.38□□□□□ -1.39
SCN1A-201ENST00000303395 SALL2Q9Y467 1007 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-201ENST00000303395 NCOA2Q15596 1464 aa6.37□□□□□ -1.39
SCN1A-201ENST00000303395 HOXA7P31268 230 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-201ENST00000303395 CAGE1Q8TC20 777 aa6.37□□□□□ -1.39
SCN1A-201ENST00000303395 ITSN2Q9NZM3 1697 aa6.37□□□□□ -1.39
SCN1A-201ENST00000303395 KIAA1211Q6ZU35 1233 aa6.37□□□□□ -1.39
SCN1A-201ENST00000303395 PRIMPOLQ96LW4 560 aa6.37□□□□□ -1.39
SCN1A-201ENST00000303395 A6NNZ2 444 aa6.37□□□□□ -1.39
SCN1A-201ENST00000303395 ZRSR2Q15696 482 aaKnown RBP6.37□□□□□ -1.39
SCN1A-201ENST00000303395 TUBB8Q3ZCM7 444 aa6.37□□□□□ -1.39
SCN1A-201ENST00000303395 NAT10Q9H0A0 1025 aaKnown RBP6.37□□□□□ -1.39
SCN1A-201ENST00000303395 RUFY2Q8WXA3 655 aa6.37□□□□□ -1.39
SCN1A-201ENST00000303395 RALGAPBQ86X10 1494 aa6.37□□□□□ -1.39
SCN1A-201ENST00000303395 ZKSCAN2Q63HK3 967 aa6.37□□□□□ -1.39
SCN1A-201ENST00000303395 GPRASP1Q5JY77 1395 aa6.36□□□□□ -1.39
SCN1A-201ENST00000303395 SPAG9O60271 1321 aaKnown RBP6.36□□□□□ -1.39
SCN1A-201ENST00000303395 RDXP35241 583 aaKnown RBP6.36□□□□□ -1.39
SCN1A-201ENST00000303395 NCOA1Q15788 1441 aa6.36□□□□□ -1.39
SCN1A-201ENST00000303395 DDX11Q96FC9 970 aa6.36□□□□□ -1.39
SCN1A-201ENST00000303395 ARAP1Q96P48 1450 aa6.36□□□□□ -1.39
SCN1A-201ENST00000303395 MCM3P25205 808 aa6.36□□□□□ -1.39
SCN1A-201ENST00000303395 GCC1Q96CN9 775 aa6.36□□□□□ -1.39
SCN1A-201ENST00000303395 FAM13BQ9NYF5 915 aa6.35□□□□□ -1.39
SCN1A-201ENST00000303395 RPRD2Q5VT52 1461 aaKnown RBP6.35□□□□□ -1.39
SCN1A-201ENST00000303395 HIP1O00291 1037 aa6.35□□□□□ -1.39
SCN1A-201ENST00000303395 BACH2Q9BYV9 841 aa6.35□□□□□ -1.39
SCN1A-201ENST00000303395 NUP155O75694 1391 aa6.35□□□□□ -1.39
SCN1A-201ENST00000303395 DYNC1I1O14576 645 aa6.35□□□□□ -1.39
SCN1A-201ENST00000303395 ZSCAN30Q86W11 494 aa6.35□□□□□ -1.39
SCN1A-201ENST00000303395 EFCAB2Q5VUJ9 269 aa6.35□□□□□ -1.39
SCN1A-201ENST00000303395 RPGRIP1LQ68CZ1 1315 aa6.35□□□□□ -1.39
SCN1A-201ENST00000303395 PES1O00541 588 aaKnown RBP6.34□□□□□ -1.39
SCN1A-201ENST00000303395 UVSSAQ2YD98 709 aa6.34□□□□□ -1.39
SCN1A-201ENST00000303395 AEBP1Q8IUX7 1158 aa6.34□□□□□ -1.39
SCN1A-201ENST00000303395 GTPBP4Q9BZE4 634 aaKnown RBP6.34□□□□□ -1.39
SCN1A-201ENST00000303395 PAF1Q8N7H5 531 aa6.34□□□□□ -1.39
SCN1A-201ENST00000303395 NEXNQ0ZGT2 675 aa6.34□□□□□ -1.39
SCN1A-201ENST00000303395 POTEB2H3BUK9 544 aa6.34□□□□□ -1.39
SCN1A-201ENST00000303395 MARCH6O60337 910 aa6.34□□□□□ -1.39
SCN1A-201ENST00000303395 HMGB2P26583 209 aaKnown RBP6.34□□□□□ -1.39
SCN1A-201ENST00000303395 WDR63Q8IWG1 891 aa6.34□□□□□ -1.39
SCN1A-201ENST00000303395 GBP3Q9H0R5 595 aa6.34□□□□□ -1.39
SCN1A-201ENST00000303395 SOS1Q07889 1333 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-201ENST00000303395 CLCN1P35523 988 aa6.34□□□□□ -1.39
SCN1A-201ENST00000303395 ODF2Q5BJF6 829 aa6.34□□□□□ -1.39
SCN1A-201ENST00000303395 HDGFL2Q7Z4V5 671 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-201ENST00000303395 IGF1RP08069 1367 aa6.34□□□□□ -1.39
SCN1A-201ENST00000303395 TCOF1Q13428 1488 aaKnown RBP6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms