RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 NEO1Q92859 1461 aa15.4■□□□□ 0.06
CUX1-202ENST00000292538 EIF2AK4Q9P2K8 1649 aaKnown RBP15.39■□□□□ 0.05
CUX1-202ENST00000292538 BRD4O60885 1362 aaPredicted RBP15.39■□□□□ 0.05
CUX1-202ENST00000292538 HECW2Q9P2P5 1572 aa15.39■□□□□ 0.05
CUX1-202ENST00000292538 DEPDC5O75140 1603 aa15.39■□□□□ 0.05
CUX1-202ENST00000292538 EFCAB6Q5THR3 1501 aa15.39■□□□□ 0.05
CUX1-202ENST00000292538 ESF1Q9H501 851 aaKnown RBP15.38■□□□□ 0.05
CUX1-202ENST00000292538 PPRC1Q5VV67 1664 aaKnown RBP15.38■□□□□ 0.05
CUX1-202ENST00000292538 FRMPD1Q5SYB0 1578 aa15.38■□□□□ 0.05
CUX1-202ENST00000292538 CENPJQ9HC77 1338 aaPredicted RBP15.38■□□□□ 0.05
CUX1-202ENST00000292538 B4GALNT3Q6L9W6 998 aa15.38■□□□□ 0.05
CUX1-202ENST00000292538 POLR1AO95602 1720 aaPredicted RBP15.37■□□□□ 0.05
CUX1-202ENST00000292538 VWDEQ8N2E2 1590 aa15.37■□□□□ 0.05
CUX1-202ENST00000292538 VGFO15240 615 aaPredicted RBP15.37■□□□□ 0.05
CUX1-202ENST00000292538 SLC12A5Q9H2X9 1139 aa15.37■□□□□ 0.05
CUX1-202ENST00000292538 CEP152O94986 1710 aa15.37■□□□□ 0.05
CUX1-202ENST00000292538 PARD3Q8TEW0 1356 aa15.36■□□□□ 0.05
CUX1-202ENST00000292538 RIMBP3CA6NJZ7 1639 aa15.36■□□□□ 0.05
CUX1-202ENST00000292538 RIMBP3BA6NNM3 1639 aa15.36■□□□□ 0.05
CUX1-202ENST00000292538 MADDQ8WXG6 1647 aa15.36■□□□□ 0.05
CUX1-202ENST00000292538 RIMBP3Q9UFD9 1639 aa15.36■□□□□ 0.05
CUX1-202ENST00000292538 WDR43Q15061 677 aaKnown RBP eCLIP15.36■□□□□ 0.05
CUX1-202ENST00000292538 NUDCQ9Y266 331 aa15.36■□□□□ 0.05
CUX1-202ENST00000292538 ABCA6Q8N139 1617 aa15.36■□□□□ 0.05
CUX1-202ENST00000292538 TSPOAP1O95153 1857 aa15.36■□□□□ 0.05
CUX1-202ENST00000292538 C14orf93Q9H972 538 aaKnown RBP15.36■□□□□ 0.05
CUX1-202ENST00000292538 ADAMTS8Q9UP79 889 aa15.36■□□□□ 0.05
CUX1-202ENST00000292538 CDCA7LQ96GN5 454 aa15.35■□□□□ 0.05
CUX1-202ENST00000292538 PPP2R1AP30153 589 aa15.35■□□□□ 0.05
CUX1-202ENST00000292538 TSHZ2Q9NRE2 1034 aa15.35■□□□□ 0.05
CUX1-202ENST00000292538 RNF17Q9BXT8 1623 aaKnown RBP15.35■□□□□ 0.05
CUX1-202ENST00000292538 AMER1Q5JTC6 1135 aaPredicted RBP15.34■□□□□ 0.05
CUX1-202ENST00000292538 CFAP74Q9C0B2 1584 aa15.34■□□□□ 0.05
CUX1-202ENST00000292538 CCDC146Q8IYE0 955 aa15.34■□□□□ 0.05
CUX1-202ENST00000292538 CABP2Q9NPB3 220 aa15.33■□□□□ 0.05
CUX1-202ENST00000292538 ABCC3O15438 1527 aa15.33■□□□□ 0.04
CUX1-202ENST00000292538 CARD14Q9BXL6 1004 aa15.33■□□□□ 0.04
CUX1-202ENST00000292538 SRPK2P78362 688 aaKnown RBP15.31■□□□□ 0.04
CUX1-202ENST00000292538 SLC52A1Q9NWF4 448 aa15.31■□□□□ 0.04
CUX1-202ENST00000292538 POGKQ9P215 609 aa15.31■□□□□ 0.04
CUX1-202ENST00000292538 MINK1Q8N4C8 1332 aaPredicted RBP15.31■□□□□ 0.04
CUX1-202ENST00000292538 DIP2CQ9Y2E4 1556 aa15.3■□□□□ 0.04
CUX1-202ENST00000292538 RPGRIP1LQ68CZ1 1315 aa15.29■□□□□ 0.04
CUX1-202ENST00000292538 LMTK2Q8IWU2 1503 aa15.28■□□□□ 0.04
CUX1-202ENST00000292538 LRPPRCP42704 1394 aaKnown RBP15.28■□□□□ 0.04
CUX1-202ENST00000292538 MORC1Q86VD1 984 aa15.28■□□□□ 0.04
CUX1-202ENST00000292538 PPP4R2Q9NY27 417 aa15.28■□□□□ 0.04
CUX1-202ENST00000292538 TRHP20396 242 aaPredicted RBP15.27■□□□□ 0.03
CUX1-202ENST00000292538 PRAM1Q96QH2 718 aa15.27■□□□□ 0.03
CUX1-202ENST00000292538 KIF1BO60333 1816 aa15.27■□□□□ 0.03
CUX1-202ENST00000292538 MAP3K4Q9Y6R4 1608 aa15.27■□□□□ 0.03
CUX1-202ENST00000292538 MROH2AA6NES4 1674 aa15.27■□□□□ 0.03
CUX1-202ENST00000292538 NEUROD2Q15784 382 aa15.26■□□□□ 0.03
CUX1-202ENST00000292538 MYOM2P54296 1465 aa15.26■□□□□ 0.03
CUX1-202ENST00000292538 SMG6Q86US8 1419 aaKnown RBP15.25■□□□□ 0.03
CUX1-202ENST00000292538 PIK3C2GO75747 1445 aa15.25■□□□□ 0.03
CUX1-202ENST00000292538 PLIN1O60240 522 aa15.25■□□□□ 0.03
CUX1-202ENST00000292538 ERVK-7P63135 1459 aa15.25■□□□□ 0.03
CUX1-202ENST00000292538 LAMC1P11047 1609 aa15.24■□□□□ 0.03
CUX1-202ENST00000292538 ADGRB3O60242 1522 aa15.24■□□□□ 0.03
CUX1-202ENST00000292538 RCAN3Q9UKA8 241 aa15.24■□□□□ 0.03
CUX1-202ENST00000292538 EVC2Q86UK5 1308 aa15.24■□□□□ 0.03
CUX1-202ENST00000292538 WAPLQ7Z5K2 1190 aa15.23■□□□□ 0.03
CUX1-202ENST00000292538 CCDC136Q96JN2 1154 aa15.23■□□□□ 0.03
CUX1-202ENST00000292538 NSD3Q9BZ95 1437 aa15.21■□□□□ 0.03
CUX1-202ENST00000292538 APAF1O14727 1248 aa15.21■□□□□ 0.03
CUX1-202ENST00000292538 CEBPAP49715 358 aaPredicted RBP15.21■□□□□ 0.03
CUX1-202ENST00000292538 DIP2BQ9P265 1576 aa15.21■□□□□ 0.03
CUX1-202ENST00000292538 IQGAP1P46940 1657 aa15.21■□□□□ 0.03
CUX1-202ENST00000292538 RICTORQ6R327 1708 aa15.21■□□□□ 0.02
CUX1-202ENST00000292538 CAMSAP1Q5T5Y3 1602 aa15.2■□□□□ 0.02
CUX1-202ENST00000292538 SYNMO15061 1565 aa15.19■□□□□ 0.02
CUX1-202ENST00000292538 MYT1Q01538 1121 aa15.19■□□□□ 0.02
CUX1-202ENST00000292538 RRP7AQ9Y3A4 280 aaKnown RBP15.19■□□□□ 0.02
CUX1-202ENST00000292538 ASXL1Q8IXJ9 1541 aa15.19■□□□□ 0.02
CUX1-202ENST00000292538 SIGLEC1Q9BZZ2 1709 aa15.19■□□□□ 0.02
CUX1-202ENST00000292538 GGNBP2Q9H3C7 697 aa15.19■□□□□ 0.02
CUX1-202ENST00000292538 MTHFSP49914 203 aa15.17■□□□□ 0.02
CUX1-202ENST00000292538 NRXN1Q9ULB1 1477 aa15.17■□□□□ 0.02
CUX1-202ENST00000292538 PPM1GO15355 546 aaPredicted RBP15.17■□□□□ 0.02
CUX1-202ENST00000292538 GLI2P10070 1586 aa15.17■□□□□ 0.02
CUX1-202ENST00000292538 NUTM2FA1L443 756 aa15.16■□□□□ 0.02
CUX1-202ENST00000292538 RRP1P56182 461 aaKnown RBP15.16■□□□□ 0.02
CUX1-202ENST00000292538 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.16■□□□□ 0.023e-6■□□□□ 10.3
CUX1-202ENST00000292538 EXOC6Q8TAG9 804 aa15.16■□□□□ 0.02
CUX1-202ENST00000292538 ARHGAP31Q2M1Z3 1444 aa15.16■□□□□ 0.02
CUX1-202ENST00000292538 TXNDC2Q86VQ3 553 aa15.16■□□□□ 0.02
CUX1-202ENST00000292538 RBM19Q9Y4C8 960 aaKnown RBP15.16■□□□□ 0.02
CUX1-202ENST00000292538 CGNL1Q0VF96 1302 aa15.16■□□□□ 0.02
CUX1-202ENST00000292538 CDK19Q9BWU1 502 aa15.16■□□□□ 0.02
CUX1-202ENST00000292538 CABP1Q9NZU7 370 aa15.15■□□□□ 0.02
CUX1-202ENST00000292538 PDE3BQ13370 1112 aa15.15■□□□□ 0.02
CUX1-202ENST00000292538 ZMYM3Q14202 1370 aa15.15■□□□□ 0.02
CUX1-202ENST00000292538 FBLN1P23142 703 aa15.14■□□□□ 0.01
CUX1-202ENST00000292538 ERICH6BQ5W0A0 696 aa15.13■□□□□ 0.01
CUX1-202ENST00000292538 PLEKHH1Q9ULM0 1364 aa15.13■□□□□ 0.01
CUX1-202ENST00000292538 GOLGA2Q08379 1002 aa15.13■□□□□ 0.01
CUX1-202ENST00000292538 U2SURPO15042 1029 aaKnown RBP15.13■□□□□ 0.01
CUX1-202ENST00000292538 NEXMIFQ5QGS0 1516 aa15.12■□□□□ 0.01
CUX1-202ENST00000292538 ADGRB1O14514 1584 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms