RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 TMEM131LA2VDJ0 1609 aa9.6□□□□□ -0.87
CD44-204ENST00000279452 ARHGAP23Q9P227 1491 aa9.6□□□□□ -0.87
CD44-204ENST00000279452 LTKP29376 864 aa9.6□□□□□ -0.87
CD44-204ENST00000279452 IQGAP1P46940 1657 aa9.6□□□□□ -0.87
CD44-204ENST00000279452 ZNF335Q9H4Z2 1342 aaPredicted RBP9.59□□□□□ -0.87
CD44-204ENST00000279452 MSH5O43196 834 aa9.59□□□□□ -0.87
CD44-204ENST00000279452 ADRA2BP18089 450 aa9.59□□□□□ -0.87
CD44-204ENST00000279452 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.59□□□□□ -0.87
CD44-204ENST00000279452 MED14O60244 1454 aa9.58□□□□□ -0.88
CD44-204ENST00000279452 ZFYVE9O95405 1425 aa9.57□□□□□ -0.88
CD44-204ENST00000279452 MYO5BQ9ULV0 1848 aa9.57□□□□□ -0.88
CD44-204ENST00000279452 HRCP23327 699 aa9.57□□□□□ -0.88
CD44-204ENST00000279452 RGL3Q3MIN7 710 aa9.57□□□□□ -0.88
CD44-204ENST00000279452 SLC26A8Q96RN1 970 aa9.57□□□□□ -0.88
CD44-204ENST00000279452 KIF1BO60333 1816 aa9.56□□□□□ -0.88
CD44-204ENST00000279452 PLEKHG1Q9ULL1 1385 aa9.55□□□□□ -0.88
CD44-204ENST00000279452 PCGF6Q9BYE7 350 aa9.55□□□□□ -0.88
CD44-204ENST00000279452 CERKQ8TCT0 537 aa9.54□□□□□ -0.88
CD44-204ENST00000279452 NEXMIFQ5QGS0 1516 aa9.53□□□□□ -0.88
CD44-204ENST00000279452 VGFO15240 615 aaPredicted RBP9.52□□□□□ -0.89
CD44-204ENST00000279452 LTBP4Q8N2S1 1624 aa9.52□□□□□ -0.89
CD44-204ENST00000279452 RPGRIP1LQ68CZ1 1315 aa9.52□□□□□ -0.89
CD44-204ENST00000279452 CPS1P31327 1500 aa9.51□□□□□ -0.89
CD44-204ENST00000279452 ANKRD30BQ9BXX2 1392 aa9.51□□□□□ -0.89
CD44-204ENST00000279452 DIP2AQ14689 1571 aa9.5□□□□□ -0.89
CD44-204ENST00000279452 SPATA31E1Q6ZUB1 1445 aa9.5□□□□□ -0.89
CD44-204ENST00000279452 ADAMTS13Q76LX8 1427 aa9.49□□□□□ -0.89
CD44-204ENST00000279452 NEUROD1Q13562 356 aa9.49□□□□□ -0.89
CD44-204ENST00000279452 C14orf37Q86TY3 774 aa9.49□□□□□ -0.89
CD44-204ENST00000279452 SCAF1Q9H7N4 1312 aaKnown RBP9.49□□□□□ -0.89
CD44-204ENST00000279452 SETBP1Q9Y6X0 1596 aa9.49□□□□□ -0.89
CD44-204ENST00000279452 DHX57Q6P158 1386 aaKnown RBP9.49□□□□□ -0.89
CD44-204ENST00000279452 PPLO60437 1756 aa9.48□□□□□ -0.89
CD44-204ENST00000279452 KCNA6P17658 529 aa9.48□□□□□ -0.89
CD44-204ENST00000279452 PROSER2Q86WR7 435 aaPredicted RBP9.48□□□□□ -0.89
CD44-204ENST00000279452 RBM33Q96EV2 1170 aaKnown RBP9.48□□□□□ -0.89
CD44-204ENST00000279452 KDM2AQ9Y2K7 1162 aa9.48□□□□□ -0.89
CD44-204ENST00000279452 TBX22Q9Y458 520 aa9.48□□□□□ -0.89
CD44-204ENST00000279452 ADGRF5Q8IZF2 1346 aa9.48□□□□□ -0.89
CD44-204ENST00000279452 NRXN3Q9Y4C0 1643 aa9.47□□□□□ -0.89
CD44-204ENST00000279452 UBAP1LF5GYI3 381 aa9.47□□□□□ -0.89
CD44-204ENST00000279452 DCAF11Q8TEB1 546 aa9.47□□□□□ -0.89
CD44-204ENST00000279452 NKTRP30414 1462 aaKnown RBP9.47□□□□□ -0.89
CD44-204ENST00000279452 LRRC7Q96NW7 1537 aa9.46□□□□□ -0.89
CD44-204ENST00000279452 NWD1Q149M9 1564 aa9.46□□□□□ -0.89
CD44-204ENST00000279452 STRCP1A6NGW2 1772 aa9.46□□□□□ -0.9
CD44-204ENST00000279452 FBXO41Q8TF61 875 aa9.46□□□□□ -0.9
CD44-204ENST00000279452 SIN3AQ96ST3 1273 aa9.46□□□□□ -0.9
CD44-204ENST00000279452 AMOTL2Q9Y2J4 779 aa9.46□□□□□ -0.9
CD44-204ENST00000279452 METP08581 1390 aa9.46□□□□□ -0.9
CD44-204ENST00000279452 TMEM94Q12767 1356 aa9.46□□□□□ -0.9
CD44-204ENST00000279452 IQSEC2Q5JU85 1478 aa9.46□□□□□ -0.9
CD44-204ENST00000279452 IFT172Q9UG01 1749 aa9.45□□□□□ -0.9
CD44-204ENST00000279452 PIP4K2BP78356 416 aa9.45□□□□□ -0.9
CD44-204ENST00000279452 PIK3R4Q99570 1358 aa9.45□□□□□ -0.9
CD44-204ENST00000279452 MYOM2P54296 1465 aa9.45□□□□□ -0.9
CD44-204ENST00000279452 ALKQ9UM73 1620 aa9.45□□□□□ -0.9
CD44-204ENST00000279452 ILDR1Q86SU0 546 aaPredicted RBP9.44□□□□□ -0.9
CD44-204ENST00000279452 POTEDQ86YR6 584 aa9.44□□□□□ -0.9
CD44-204ENST00000279452 STK26Q9P289 416 aa9.44□□□□□ -0.9
CD44-204ENST00000279452 PIK3C2GO75747 1445 aa9.44□□□□□ -0.9
CD44-204ENST00000279452 PTPRUQ92729 1446 aa9.43□□□□□ -0.9
CD44-204ENST00000279452 MSH6P52701 1360 aa9.43□□□□□ -0.9
CD44-204ENST00000279452 TOM1O60784 492 aa9.43□□□□□ -0.9
CD44-204ENST00000279452 TONSLQ96HA7 1378 aa9.42□□□□□ -0.9
CD44-204ENST00000279452 CFAP70Q5T0N1 1121 aa9.42□□□□□ -0.9
CD44-204ENST00000279452 TMEM132EQ6IEE7 984 aa9.42□□□□□ -0.9
CD44-204ENST00000279452 CHD2O14647 1828 aaKnown RBP9.41□□□□□ -0.9
CD44-204ENST00000279452 CCER1Q8TC90 406 aaPredicted RBP9.41□□□□□ -0.9
CD44-204ENST00000279452 XRN1Q8IZH2 1706 aaKnown RBP9.41□□□□□ -0.9
CD44-204ENST00000279452 LAMC1P11047 1609 aa9.41□□□□□ -0.9
CD44-204ENST00000279452 SETD1AO15047 1707 aaKnown RBP9.4□□□□□ -0.9
CD44-204ENST00000279452 NRXN1Q9ULB1 1477 aa9.4□□□□□ -0.91
CD44-204ENST00000279452 ATF3P18847 181 aa9.39□□□□□ -0.91
CD44-204ENST00000279452 L3MBTL2Q969R5 705 aa9.39□□□□□ -0.91
CD44-204ENST00000279452 C14orf93Q9H972 538 aaKnown RBP9.39□□□□□ -0.91
CD44-204ENST00000279452 ASXL1Q8IXJ9 1541 aa9.39□□□□□ -0.91
CD44-204ENST00000279452 PTCH1Q13635 1447 aa9.39□□□□□ -0.91
CD44-204ENST00000279452 YTHDC2Q9H6S0 1430 aaKnown RBP9.39□□□□□ -0.91
CD44-204ENST00000279452 LRPPRCP42704 1394 aaKnown RBP9.38□□□□□ -0.91
CD44-204ENST00000279452 ROBO2Q9HCK4 1378 aa9.38□□□□□ -0.91
CD44-204ENST00000279452 STAC3Q96MF2 364 aa9.38□□□□□ -0.91
CD44-204ENST00000279452 SAFB2Q14151 953 aaKnown RBP eCLIP9.37□□□□□ -0.91
CD44-204ENST00000279452 POGKQ9P215 609 aa9.37□□□□□ -0.91
CD44-204ENST00000279452 TRAK1Q9UPV9 953 aa9.37□□□□□ -0.91
CD44-204ENST00000279452 XIRP1Q702N8 1843 aaKnown RBP9.37□□□□□ -0.91
CD44-204ENST00000279452 PRAG1Q86YV5 1406 aa9.37□□□□□ -0.91
CD44-204ENST00000279452 WAPLQ7Z5K2 1190 aa9.36□□□□□ -0.91
CD44-204ENST00000279452 CADPS2Q86UW7 1296 aa9.36□□□□□ -0.91
CD44-204ENST00000279452 C19orf44Q9H6X5 657 aa9.36□□□□□ -0.91
CD44-204ENST00000279452 ADGRL3Q9HAR2 1447 aa9.36□□□□□ -0.91
CD44-204ENST00000279452 NCOA3Q9Y6Q9 1424 aa9.36□□□□□ -0.91
CD44-204ENST00000279452 NALCNQ8IZF0 1738 aa9.35□□□□□ -0.91
CD44-204ENST00000279452 PRAM1Q96QH2 718 aa9.35□□□□□ -0.91
CD44-204ENST00000279452 ABCC11Q96J66 1382 aa9.35□□□□□ -0.91
CD44-204ENST00000279452 PLEKHH1Q9ULM0 1364 aa9.35□□□□□ -0.91
CD44-204ENST00000279452 KNDC1Q76NI1 1749 aa9.34□□□□□ -0.91
CD44-204ENST00000279452 TECPR2O15040 1411 aa9.34□□□□□ -0.91
CD44-204ENST00000279452 SLAIN2Q9P270 581 aa9.34□□□□□ -0.91
CD44-204ENST00000279452 ROCK2O75116 1388 aaKnown RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms