RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 AFAP1Q8N556 730 aa17.13■□□□□ 0.33
NUP54-201ENST00000264883 NUP155O75694 1391 aa17.13■□□□□ 0.33
NUP54-201ENST00000264883 LAMC1P11047 1609 aa17.13■□□□□ 0.33
NUP54-201ENST00000264883 NLRP13Q86W25 1043 aa17.13■□□□□ 0.33
NUP54-201ENST00000264883 SKAP1Q86WV1 359 aa17.13■□□□□ 0.33
NUP54-201ENST00000264883 ERBINQ96RT1 1412 aa17.12■□□□□ 0.33
NUP54-201ENST00000264883 MAP3K4Q9Y6R4 1608 aa17.12■□□□□ 0.33
NUP54-201ENST00000264883 PARD3Q8TEW0 1356 aa17.11■□□□□ 0.33
NUP54-201ENST00000264883 SPAG9O60271 1321 aaKnown RBP17.11■□□□□ 0.33
NUP54-201ENST00000264883 ATP7AQ04656 1500 aa17.1■□□□□ 0.33
NUP54-201ENST00000264883 HSP90AA2PQ14568 343 aaPredicted RBP17.09■□□□□ 0.33
NUP54-201ENST00000264883 MAGI2Q86UL8 1455 aa17.09■□□□□ 0.33
NUP54-201ENST00000264883 NEO1Q92859 1461 aa17.09■□□□□ 0.33
NUP54-201ENST00000264883 TRPM1Q7Z4N2 1603 aa17.09■□□□□ 0.33
NUP54-201ENST00000264883 ST20-MTHFSA0A0A6YYL1 179 aa17.08■□□□□ 0.32
NUP54-201ENST00000264883 FAM135AQ9P2D6 1515 aa17.07■□□□□ 0.32
NUP54-201ENST00000264883 ZNF518AQ6AHZ1 1483 aa17.07■□□□□ 0.32
NUP54-201ENST00000264883 RRP9O43818 475 aaKnown RBP17.07■□□□□ 0.32
NUP54-201ENST00000264883 NAP1L5Q96NT1 182 aaPredicted RBP17.07■□□□□ 0.32
NUP54-201ENST00000264883 KIF13AQ9H1H9 1805 aa17.07■□□□□ 0.32
NUP54-201ENST00000264883 POGZQ7Z3K3 1410 aa17.06■□□□□ 0.32
NUP54-201ENST00000264883 FAM69CQ0P6D2 419 aa17.06■□□□□ 0.32
NUP54-201ENST00000264883 KIDINS220Q9ULH0 1771 aa17.06■□□□□ 0.32
NUP54-201ENST00000264883 L1TD1Q5T7N2 865 aaKnown RBP17.06■□□□□ 0.32
NUP54-201ENST00000264883 IQGAP3Q86VI3 1631 aa17.06■□□□□ 0.32
NUP54-201ENST00000264883 GPRASP1Q5JY77 1395 aa17.05■□□□□ 0.32
NUP54-201ENST00000264883 HSP90AA1P07900 732 aaKnown RBP17.05■□□□□ 0.32
NUP54-201ENST00000264883 BLMP54132 1417 aaPredicted RBP17.04■□□□□ 0.32
NUP54-201ENST00000264883 PRAG1Q86YV5 1406 aa17.04■□□□□ 0.32
NUP54-201ENST00000264883 FAM161AQ3B820 660 aa17.04■□□□□ 0.32
NUP54-201ENST00000264883 EIF2AK4Q9P2K8 1649 aaKnown RBP17.04■□□□□ 0.32
NUP54-201ENST00000264883 CRBNQ96SW2 442 aa17.03■□□□□ 0.32
NUP54-201ENST00000264883 POGKQ9P215 609 aa17.03■□□□□ 0.32
NUP54-201ENST00000264883 COL17A1Q9UMD9 1497 aaPredicted RBP17.03■□□□□ 0.32
NUP54-201ENST00000264883 PLIN1O60240 522 aa17.02■□□□□ 0.32
NUP54-201ENST00000264883 PNNQ9H307 717 aaKnown RBP17.02■□□□□ 0.31
NUP54-201ENST00000264883 DEPDC5O75140 1603 aa17.02■□□□□ 0.31
NUP54-201ENST00000264883 MLH3Q9UHC1 1453 aa17.01■□□□□ 0.31
NUP54-201ENST00000264883 PRDM15P57071 1507 aaPredicted RBP17.01■□□□□ 0.31
NUP54-201ENST00000264883 C8orf34Q49A92 452 aa17.01■□□□□ 0.31
NUP54-201ENST00000264883 CCDC144AA2RUR9 1427 aa16.99■□□□□ 0.31
NUP54-201ENST00000264883 HECW2Q9P2P5 1572 aa16.99■□□□□ 0.31
NUP54-201ENST00000264883 PODXL2Q9NZ53 605 aa16.99■□□□□ 0.31
NUP54-201ENST00000264883 KDM2BQ8NHM5 1336 aa16.99■□□□□ 0.31
NUP54-201ENST00000264883 PER1O15534 1290 aaPredicted RBP16.97■□□□□ 0.31
NUP54-201ENST00000264883 PPRC1Q5VV67 1664 aaKnown RBP16.97■□□□□ 0.31
NUP54-201ENST00000264883 RICTORQ6R327 1708 aa16.97■□□□□ 0.31
NUP54-201ENST00000264883 CLCN1P35523 988 aa16.97■□□□□ 0.31
NUP54-201ENST00000264883 KDM2AQ9Y2K7 1162 aa16.97■□□□□ 0.31
NUP54-201ENST00000264883 CENPQQ7L2Z9 268 aaPredicted RBP16.96■□□□□ 0.31
NUP54-201ENST00000264883 TSPOAP1O95153 1857 aa16.96■□□□□ 0.31
NUP54-201ENST00000264883 VWDEQ8N2E2 1590 aa16.96■□□□□ 0.31
NUP54-201ENST00000264883 CDCA7LQ96GN5 454 aa16.96■□□□□ 0.31
NUP54-201ENST00000264883 MROH1Q8NDA8 1641 aa16.95■□□□□ 0.3
NUP54-201ENST00000264883 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.94■□□□□ 0.3
NUP54-201ENST00000264883 FRMPD1Q5SYB0 1578 aa16.94■□□□□ 0.3
NUP54-201ENST00000264883 PLA2R1Q13018 1463 aa16.94■□□□□ 0.3
NUP54-201ENST00000264883 ABCA6Q8N139 1617 aa16.94■□□□□ 0.3
NUP54-201ENST00000264883 A2MP01023 1474 aa16.93■□□□□ 0.3
NUP54-201ENST00000264883 ATP10AO60312 1499 aa16.93■□□□□ 0.3
NUP54-201ENST00000264883 RAPGEF3O95398 923 aa16.92■□□□□ 0.3
NUP54-201ENST00000264883 RNF17Q9BXT8 1623 aaKnown RBP16.91■□□□□ 0.3
NUP54-201ENST00000264883 TET3O43151 1660 aa16.9■□□□□ 0.3
NUP54-201ENST00000264883 DIP2CQ9Y2E4 1556 aa16.9■□□□□ 0.3
NUP54-201ENST00000264883 XRCC6P12956 609 aaKnown RBP eCLIP16.89■□□□□ 0.3
NUP54-201ENST00000264883 TRHP20396 242 aaPredicted RBP16.89■□□□□ 0.3
NUP54-201ENST00000264883 TMF1P82094 1093 aa16.89■□□□□ 0.3
NUP54-201ENST00000264883 PLEKHG5O94827 1062 aa16.89■□□□□ 0.29
NUP54-201ENST00000264883 C20orf194Q5TEA3 1177 aa16.89■□□□□ 0.29
NUP54-201ENST00000264883 GOLGA6L3A6NEY3 463 aa16.88■□□□□ 0.29
NUP54-201ENST00000264883 KIF3BO15066 747 aa16.88■□□□□ 0.29
NUP54-201ENST00000264883 ARXQ96QS3 562 aa16.88■□□□□ 0.29
NUP54-201ENST00000264883 TESK2Q96S53 571 aa16.88■□□□□ 0.29
NUP54-201ENST00000264883 RGS3P49796 1198 aa16.87■□□□□ 0.29
NUP54-201ENST00000264883 DISP3Q9P2K9 1392 aa16.87■□□□□ 0.29
NUP54-201ENST00000264883 BECN1Q14457 450 aa16.86■□□□□ 0.29
NUP54-201ENST00000264883 KANK1Q14678 1352 aa16.86■□□□□ 0.29
NUP54-201ENST00000264883 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.85■□□□□ 0.29
NUP54-201ENST00000264883 LMTK2Q8IWU2 1503 aa16.85■□□□□ 0.29
NUP54-201ENST00000264883 SLKQ9H2G2 1235 aaPredicted RBP16.85■□□□□ 0.29
NUP54-201ENST00000264883 PTPRTO14522 1441 aa16.84■□□□□ 0.29
NUP54-201ENST00000264883 EIF3AQ14152 1382 aaKnown RBP16.84■□□□□ 0.29
NUP54-201ENST00000264883 FSD2A1L4K1 749 aa16.84■□□□□ 0.29
NUP54-201ENST00000264883 PANK3Q9H999 370 aa16.84■□□□□ 0.29
NUP54-201ENST00000264883 YEATS2Q9ULM3 1422 aa16.83■□□□□ 0.28
NUP54-201ENST00000264883 PANK2Q9BZ23 570 aa16.83■□□□□ 0.28
NUP54-201ENST00000264883 TRPM2O94759 1503 aa16.83■□□□□ 0.28
NUP54-201ENST00000264883 NBPF1Q3BBV0 1214 aa16.82■□□□□ 0.28
NUP54-201ENST00000264883 SYNMO15061 1565 aa16.82■□□□□ 0.28
NUP54-201ENST00000264883 EFCAB6Q5THR3 1501 aa16.82■□□□□ 0.28
NUP54-201ENST00000264883 VIRMAQ69YN4 1812 aaKnown RBP16.82■□□□□ 0.28
NUP54-201ENST00000264883 SPHKAPQ2M3C7 1700 aa16.82■□□□□ 0.28
NUP54-201ENST00000264883 USP19O94966 1318 aa16.81■□□□□ 0.28
NUP54-201ENST00000264883 CC2D1BQ5T0F9 858 aaKnown RBP16.81■□□□□ 0.28
NUP54-201ENST00000264883 STAC3Q96MF2 364 aa16.81■□□□□ 0.28
NUP54-201ENST00000264883 CDCA8Q53HL2 280 aa16.81■□□□□ 0.28
NUP54-201ENST00000264883 IQGAP1P46940 1657 aa16.8■□□□□ 0.28
NUP54-201ENST00000264883 CEP152O94986 1710 aa16.8■□□□□ 0.28
NUP54-201ENST00000264883 NPC1L1Q9UHC9 1359 aa16.8■□□□□ 0.28
NUP54-201ENST00000264883 PIK3C2GO75747 1445 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms