RNA–Protein interactions for RNA: ENST00000260327.8

CTDSPL2-201, Transcript of CTD small phosphatase like 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSPL2, Length 6,828 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-201ENST00000260327 HOMER1Q86YM7 354 aa11.95□□□□□ -0.5
CTDSPL2-201ENST00000260327 APPP05067 770 aa11.94□□□□□ -0.5
CTDSPL2-201ENST00000260327 IGF1RP08069 1367 aa11.94□□□□□ -0.5
CTDSPL2-201ENST00000260327 CCDC39Q9UFE4 941 aa11.94□□□□□ -0.5
CTDSPL2-201ENST00000260327 WDR97A6NE52 1622 aa11.94□□□□□ -0.5
CTDSPL2-201ENST00000260327 RRP9O43818 475 aaKnown RBP11.94□□□□□ -0.5
CTDSPL2-201ENST00000260327 FBXW7Q969H0 707 aa11.94□□□□□ -0.5
CTDSPL2-201ENST00000260327 ARAP1Q96P48 1450 aa11.94□□□□□ -0.5
CTDSPL2-201ENST00000260327 DZIP1LQ8IYY4 767 aaKnown RBP11.93□□□□□ -0.5
CTDSPL2-201ENST00000260327 H3BQV1 296 aa11.93□□□□□ -0.5
CTDSPL2-201ENST00000260327 IFFO2Q5TF58 517 aa11.93□□□□□ -0.5
CTDSPL2-201ENST00000260327 SPAG9O60271 1321 aaKnown RBP11.93□□□□□ -0.5
CTDSPL2-201ENST00000260327 CAVIN1Q6NZI2 390 aaKnown RBP11.93□□□□□ -0.5
CTDSPL2-201ENST00000260327 RRBP1Q9P2E9 1410 aaKnown RBP11.93□□□□□ -0.5
CTDSPL2-201ENST00000260327 PES1O00541 588 aaKnown RBP11.93□□□□□ -0.5
CTDSPL2-201ENST00000260327 MPNDQ8N594 471 aa11.93□□□□□ -0.5
CTDSPL2-201ENST00000260327 LNPKQ9C0E8 428 aa11.93□□□□□ -0.5
CTDSPL2-201ENST00000260327 NUTM2FA1L443 756 aa11.92□□□□□ -0.5
CTDSPL2-201ENST00000260327 MYOM3Q5VTT5 1437 aa11.91□□□□□ -0.5
CTDSPL2-201ENST00000260327 PRDM10Q9NQV6 1147 aa11.91□□□□□ -0.5
CTDSPL2-201ENST00000260327 ISY1Q9ULR0 285 aaKnown RBP11.91□□□□□ -0.5
CTDSPL2-201ENST00000260327 DDX19BQ9UMR2 479 aa11.91□□□□□ -0.5
CTDSPL2-201ENST00000260327 BACH2Q9BYV9 841 aa11.91□□□□□ -0.5
CTDSPL2-201ENST00000260327 PDS5BQ9NTI5 1447 aa11.91□□□□□ -0.5
CTDSPL2-201ENST00000260327 ATP6V1DQ9Y5K8 247 aa11.91□□□□□ -0.5
CTDSPL2-201ENST00000260327 DIAPH3Q9NSV4 1193 aa11.91□□□□□ -0.5
CTDSPL2-201ENST00000260327 RSPH4AQ5TD94 716 aa11.91□□□□□ -0.5
CTDSPL2-201ENST00000260327 UQCRHLA0A096LP55 91 aa11.9□□□□□ -0.5
CTDSPL2-201ENST00000260327 UQCRHP07919 91 aa11.9□□□□□ -0.5
CTDSPL2-201ENST00000260327 BRD4O60885 1362 aaPredicted RBP11.9□□□□□ -0.5
CTDSPL2-201ENST00000260327 UBE2Q2Q8WVN8 375 aa11.9□□□□□ -0.5
CTDSPL2-201ENST00000260327 NBPF8Q3BBV2 869 aa11.9□□□□□ -0.51
CTDSPL2-201ENST00000260327 JPH4Q96JJ6 628 aa11.9□□□□□ -0.51
CTDSPL2-201ENST00000260327 CCDC66A2RUB6 948 aa11.89□□□□□ -0.51
CTDSPL2-201ENST00000260327 GPATCH3Q96I76 525 aa11.89□□□□□ -0.51
CTDSPL2-201ENST00000260327 NPHP1O15259 732 aa11.89□□□□□ -0.51
CTDSPL2-201ENST00000260327 CCDC173Q0VFZ6 552 aa11.89□□□□□ -0.51
CTDSPL2-201ENST00000260327 RASSF8Q8NHQ8 419 aa11.89□□□□□ -0.51
CTDSPL2-201ENST00000260327 LMOD3Q0VAK6 560 aa11.89□□□□□ -0.51
CTDSPL2-201ENST00000260327 NOM1Q5C9Z4 860 aaKnown RBP11.89□□□□□ -0.51
CTDSPL2-201ENST00000260327 ZNF330Q9Y3S2 320 aaPredicted RBP11.89□□□□□ -0.51
CTDSPL2-201ENST00000260327 HDGFP51858 240 aaKnown RBP11.88□□□□□ -0.51
CTDSPL2-201ENST00000260327 RIPK4P57078 832 aa11.88□□□□□ -0.51
CTDSPL2-201ENST00000260327 NUCB2P80303 420 aa11.88□□□□□ -0.51
CTDSPL2-201ENST00000260327 FAM184AQ8NB25 1140 aa11.88□□□□□ -0.51
CTDSPL2-201ENST00000260327 GRPEL1Q9HAV7 217 aa11.88□□□□□ -0.51
CTDSPL2-201ENST00000260327 MNS1Q8NEH6 495 aa11.88□□□□□ -0.51
CTDSPL2-201ENST00000260327 LTV1Q96GA3 475 aaPredicted RBP11.88□□□□□ -0.51
CTDSPL2-201ENST00000260327 BICD2Q8TD16 824 aa11.88□□□□□ -0.51
CTDSPL2-201ENST00000260327 WASHC2CQ9Y4E1 1318 aa11.88□□□□□ -0.51
CTDSPL2-201ENST00000260327 RUNDC1Q96C34 613 aa11.87□□□□□ -0.51
CTDSPL2-201ENST00000260327 CALRP27797 417 aaKnown RBP11.87□□□□□ -0.51
CTDSPL2-201ENST00000260327 TPD52L1Q16890 204 aaPredicted RBP11.87□□□□□ -0.51
CTDSPL2-201ENST00000260327 PNISRQ8TF01 805 aaKnown RBP11.87□□□□□ -0.51
CTDSPL2-201ENST00000260327 ARGLU1Q9NWB6 273 aaPredicted RBP11.87□□□□□ -0.51
CTDSPL2-201ENST00000260327 VPS37CA5D8V6 355 aaPredicted RBP11.86□□□□□ -0.51
CTDSPL2-201ENST00000260327 ESPNB1AK53 854 aa11.86□□□□□ -0.51
CTDSPL2-201ENST00000260327 BCAR3O75815 825 aa11.86□□□□□ -0.51
CTDSPL2-201ENST00000260327 SKAP1Q86WV1 359 aa11.86□□□□□ -0.51
CTDSPL2-201ENST00000260327 CCDC34Q96HJ3 373 aa11.86□□□□□ -0.51
CTDSPL2-201ENST00000260327 ZMYND15Q9H091 742 aa11.86□□□□□ -0.51
CTDSPL2-201ENST00000260327 CCDC9Q9Y3X0 531 aaKnown RBP11.86□□□□□ -0.51
CTDSPL2-201ENST00000260327 NCOA2Q15596 1464 aa11.86□□□□□ -0.51
CTDSPL2-201ENST00000260327 PRPF40AO75400 957 aaKnown RBP11.86□□□□□ -0.51
CTDSPL2-201ENST00000260327 GORABQ5T7V8 394 aa11.86□□□□□ -0.51
CTDSPL2-201ENST00000260327 FGD5Q6ZNL6 1462 aa11.85□□□□□ -0.51
CTDSPL2-201ENST00000260327 RAD54L2Q9Y4B4 1467 aa11.85□□□□□ -0.51
CTDSPL2-201ENST00000260327 REC8O95072 547 aa11.85□□□□□ -0.51
CTDSPL2-201ENST00000260327 NECTIN2Q92692 538 aa11.85□□□□□ -0.51
CTDSPL2-201ENST00000260327 MINK1Q8N4C8 1332 aaPredicted RBP11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 SYNJ1O43426 1573 aa11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 CUX1P39880 1505 aa11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 SASS6Q6UVJ0 657 aa11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 SPC24Q8NBT2 197 aa11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 AMPHP49418 695 aa11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 PDZRN3Q9UPQ7 1066 aa11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 FOSBP53539 338 aa11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 SKIDA1Q1XH10 827 aa11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 ANO2Q9NQ90 1003 aa11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 FANCD2Q9BXW9 1451 aa11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 EVC2Q86UK5 1308 aa11.84□□□□□ -0.51
CTDSPL2-201ENST00000260327 TAF7LQ5H9L4 462 aa11.83□□□□□ -0.51
CTDSPL2-201ENST00000260327 SMG6Q86US8 1419 aaKnown RBP11.83□□□□□ -0.51
CTDSPL2-201ENST00000260327 KRI1Q8N9T8 703 aaKnown RBP11.83□□□□□ -0.52
CTDSPL2-201ENST00000260327 NBPF1Q3BBV0 1214 aa11.83□□□□□ -0.52
CTDSPL2-201ENST00000260327 DIAPH1O60610 1272 aaKnown RBP11.83□□□□□ -0.52
CTDSPL2-201ENST00000260327 TSR1Q2NL82 804 aaKnown RBP11.83□□□□□ -0.52
CTDSPL2-201ENST00000260327 PPP2R1AP30153 589 aa11.83□□□□□ -0.52
CTDSPL2-201ENST00000260327 CCDC70Q6NSX1 233 aa11.83□□□□□ -0.52
CTDSPL2-201ENST00000260327 KIF3AQ9Y496 699 aa11.83□□□□□ -0.52
CTDSPL2-201ENST00000260327 ERICH4A6NGS2 130 aa11.82□□□□□ -0.52
CTDSPL2-201ENST00000260327 TSPY26PQ9H489 355 aa11.82□□□□□ -0.52
CTDSPL2-201ENST00000260327 CWC15Q9P013 229 aaKnown RBP11.82□□□□□ -0.52
CTDSPL2-201ENST00000260327 TOMM22Q9NS69 142 aa11.82□□□□□ -0.52
CTDSPL2-201ENST00000260327 CFTRP13569 1480 aa11.82□□□□□ -0.52
CTDSPL2-201ENST00000260327 HMGN5P82970 282 aaKnown RBP11.81□□□□□ -0.52
CTDSPL2-201ENST00000260327 SMC3Q9UQE7 1217 aa11.81□□□□□ -0.52
CTDSPL2-201ENST00000260327 HSP90B2PQ58FF3 399 aa11.81□□□□□ -0.52
CTDSPL2-201ENST00000260327 TPM1P09493 284 aa11.81□□□□□ -0.52
CTDSPL2-201ENST00000260327 HMOX1P09601 288 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms