RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 HSP90AA2PQ14568 343 aaPredicted RBP18.44■□□□□ 0.54
SDC1-201ENST00000254351 RALGAPBQ86X10 1494 aa18.44■□□□□ 0.54
SDC1-201ENST00000254351 PPP2R1AP30153 589 aa18.44■□□□□ 0.54
SDC1-201ENST00000254351 TNNQ9UQP3 1299 aa18.44■□□□□ 0.54
SDC1-201ENST00000254351 TNNT2P45379 298 aaPredicted RBP18.43■□□□□ 0.54
SDC1-201ENST00000254351 RRP7AQ9Y3A4 280 aaKnown RBP18.43■□□□□ 0.54
SDC1-201ENST00000254351 ANKRD30AQ9BXX3 1397 aa18.43■□□□□ 0.54
SDC1-201ENST00000254351 L1TD1Q5T7N2 865 aaKnown RBP18.43■□□□□ 0.54
SDC1-201ENST00000254351 WDR7Q9Y4E6 1490 aa18.42■□□□□ 0.54
SDC1-201ENST00000254351 NPM1P06748 294 aaKnown RBP eCLIP18.42■□□□□ 0.54
SDC1-201ENST00000254351 CDC42BPAQ5VT25 1732 aa18.42■□□□□ 0.54
SDC1-201ENST00000254351 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.41■□□□□ 0.54
SDC1-201ENST00000254351 TMF1P82094 1093 aa18.41■□□□□ 0.54
SDC1-201ENST00000254351 GLIPR1L2Q4G1C9 344 aa18.41■□□□□ 0.54
SDC1-201ENST00000254351 TBC1D2Q9BYX2 928 aa18.41■□□□□ 0.54
SDC1-201ENST00000254351 HSP90AA1P07900 732 aaKnown RBP18.41■□□□□ 0.54
SDC1-201ENST00000254351 CYB5RLQ6IPT4 315 aa18.4■□□□□ 0.54
SDC1-201ENST00000254351 UPF2Q9HAU5 1272 aaKnown RBP18.4■□□□□ 0.54
SDC1-201ENST00000254351 TTC37Q6PGP7 1564 aa18.4■□□□□ 0.54
SDC1-201ENST00000254351 SLFN5Q08AF3 891 aa18.4■□□□□ 0.54
SDC1-201ENST00000254351 TESK2Q96S53 571 aa18.39■□□□□ 0.53
SDC1-201ENST00000254351 ASXL2Q76L83 1435 aa18.39■□□□□ 0.53
SDC1-201ENST00000254351 CAMSAP2Q08AD1 1489 aa18.39■□□□□ 0.53
SDC1-201ENST00000254351 MFAP1P55081 439 aaKnown RBP18.38■□□□□ 0.53
SDC1-201ENST00000254351 DNMT1P26358 1616 aaKnown RBP18.38■□□□□ 0.53
SDC1-201ENST00000254351 PREX2Q70Z35 1606 aa18.37■□□□□ 0.53
SDC1-201ENST00000254351 FOXD4L1Q9NU39 408 aa18.37■□□□□ 0.53
SDC1-201ENST00000254351 BLMP54132 1417 aaPredicted RBP18.37■□□□□ 0.53
SDC1-201ENST00000254351 ARID3AQ99856 593 aa18.36■□□□□ 0.53
SDC1-201ENST00000254351 UHRF1BP1Q6BDS2 1440 aa18.34■□□□□ 0.53
SDC1-201ENST00000254351 ANTXR1Q9H6X2 564 aa18.34■□□□□ 0.53
SDC1-201ENST00000254351 MYO5CQ9NQX4 1742 aa18.34■□□□□ 0.53
SDC1-201ENST00000254351 CDC42BPBQ9Y5S2 1711 aa18.34■□□□□ 0.53
SDC1-201ENST00000254351 TRAK2O60296 914 aa18.33■□□□□ 0.53
SDC1-201ENST00000254351 MCM4P33991 863 aa18.33■□□□□ 0.52
SDC1-201ENST00000254351 ZMYM4Q5VZL5 1548 aa18.32■□□□□ 0.52
SDC1-201ENST00000254351 PCDHB15Q9Y5E8 787 aa18.32■□□□□ 0.52
SDC1-201ENST00000254351 PDZRN3Q9UPQ7 1066 aa18.31■□□□□ 0.52
SDC1-201ENST00000254351 PLCH2O75038 1416 aa18.31■□□□□ 0.52
SDC1-201ENST00000254351 CENPJQ9HC77 1338 aaPredicted RBP18.31■□□□□ 0.52
SDC1-201ENST00000254351 ABCA9Q8IUA7 1624 aa18.3■□□□□ 0.52
SDC1-201ENST00000254351 ARHGAP5Q13017 1502 aa18.3■□□□□ 0.52
SDC1-201ENST00000254351 CCDC144AA2RUR9 1427 aa18.3■□□□□ 0.52
SDC1-201ENST00000254351 RLBP1P12271 317 aa18.3■□□□□ 0.52
SDC1-201ENST00000254351 MYH16Q9H6N6 1097 aa18.29■□□□□ 0.52
SDC1-201ENST00000254351 ERBINQ96RT1 1412 aa18.29■□□□□ 0.52
SDC1-201ENST00000254351 ERBB4Q15303 1308 aa18.29■□□□□ 0.52
SDC1-201ENST00000254351 ARAP3Q8WWN8 1544 aa18.28■□□□□ 0.52
SDC1-201ENST00000254351 SAMD9LQ8IVG5 1584 aa18.28■□□□□ 0.52
SDC1-201ENST00000254351 ZNF521Q96K83 1311 aa18.28■□□□□ 0.52
SDC1-201ENST00000254351 TRIM44Q96DX7 344 aaPredicted RBP18.27■□□□□ 0.52
SDC1-201ENST00000254351 TBC1D32Q96NH3 1257 aa18.27■□□□□ 0.51
SDC1-201ENST00000254351 MAPK8IP3Q9UPT6 1336 aa18.26■□□□□ 0.51
SDC1-201ENST00000254351 AMER1Q5JTC6 1135 aaPredicted RBP18.26■□□□□ 0.51
SDC1-201ENST00000254351 PRAG1Q86YV5 1406 aa18.26■□□□□ 0.51
SDC1-201ENST00000254351 CLCN1P35523 988 aa18.25■□□□□ 0.51
SDC1-201ENST00000254351 C9orf84Q5VXU9 1444 aa18.25■□□□□ 0.51
SDC1-201ENST00000254351 ZBTB7CA1YPR0 619 aa18.24■□□□□ 0.51
SDC1-201ENST00000254351 E9PSI1 815 aa18.24■□□□□ 0.51
SDC1-201ENST00000254351 GRPEL1Q9HAV7 217 aa18.24■□□□□ 0.51
SDC1-201ENST00000254351 CGNL1Q0VF96 1302 aa18.24■□□□□ 0.51
SDC1-201ENST00000254351 ESPNB1AK53 854 aa18.23■□□□□ 0.51
SDC1-201ENST00000254351 PLEKHH2Q8IVE3 1493 aa18.23■□□□□ 0.51
SDC1-201ENST00000254351 ARHGEF5Q12774 1597 aa18.23■□□□□ 0.51
SDC1-201ENST00000254351 EFCAB2Q5VUJ9 269 aa18.23■□□□□ 0.51
SDC1-201ENST00000254351 C22orf23Q9BZE7 217 aa18.23■□□□□ 0.51
SDC1-201ENST00000254351 CROCC2H7BZ55 1655 aa18.23■□□□□ 0.51
SDC1-201ENST00000254351 RBM10P98175 930 aaKnown RBP18.23■□□□□ 0.51
SDC1-201ENST00000254351 SENP3Q9H4L4 574 aaPredicted RBP18.23■□□□□ 0.51
SDC1-201ENST00000254351 EIF3AQ14152 1382 aaKnown RBP18.22■□□□□ 0.51
SDC1-201ENST00000254351 NKTRP30414 1462 aaKnown RBP18.22■□□□□ 0.51
SDC1-201ENST00000254351 MAGI2Q86UL8 1455 aa18.22■□□□□ 0.51
SDC1-201ENST00000254351 SHANK2Q9UPX8 1470 aa18.21■□□□□ 0.5
SDC1-201ENST00000254351 FSD2A1L4K1 749 aa18.21■□□□□ 0.5
SDC1-201ENST00000254351 SYCP2Q9BX26 1530 aa18.2■□□□□ 0.5
SDC1-201ENST00000254351 COL17A1Q9UMD9 1497 aaPredicted RBP18.2■□□□□ 0.5
SDC1-201ENST00000254351 GAS2L3Q86XJ1 694 aa18.2■□□□□ 0.5
SDC1-201ENST00000254351 RSPH4AQ5TD94 716 aa18.19■□□□□ 0.5
SDC1-201ENST00000254351 WWC1Q8IX03 1113 aa18.19■□□□□ 0.5
SDC1-201ENST00000254351 CCDC141Q6ZP82 1450 aa18.19■□□□□ 0.5
SDC1-201ENST00000254351 MRE11P49959 708 aa18.19■□□□□ 0.5
SDC1-201ENST00000254351 CHMP5Q9NZZ3 219 aa18.19■□□□□ 0.5
SDC1-201ENST00000254351 E9PCH4 1651 aa18.18■□□□□ 0.5
SDC1-201ENST00000254351 FANCAO15360 1455 aa18.18■□□□□ 0.5
SDC1-201ENST00000254351 ADGRL2O95490 1459 aa18.18■□□□□ 0.5
SDC1-201ENST00000254351 RRP9O43818 475 aaKnown RBP18.18■□□□□ 0.5
SDC1-201ENST00000254351 ABCC1P33527 1531 aa18.18■□□□□ 0.5
SDC1-201ENST00000254351 CD109Q6YHK3 1445 aa18.17■□□□□ 0.5
SDC1-201ENST00000254351 HSCBQ8IWL3 235 aa18.17■□□□□ 0.5
SDC1-201ENST00000254351 PDE3AQ14432 1141 aa18.17■□□□□ 0.5
SDC1-201ENST00000254351 TRMT2AQ8IZ69 625 aaKnown RBP18.17■□□□□ 0.5
SDC1-201ENST00000254351 ADGBQ8N7X0 1667 aa18.17■□□□□ 0.5
SDC1-201ENST00000254351 FTSJ3Q8IY81 847 aaKnown RBP18.16■□□□□ 0.5
SDC1-201ENST00000254351 ARHGEF12Q9NZN5 1544 aa18.16■□□□□ 0.5
SDC1-201ENST00000254351 PMFBP1Q8TBY8 1022 aa18.16■□□□□ 0.5
SDC1-201ENST00000254351 GLI2P10070 1586 aa18.15■□□□□ 0.5
SDC1-201ENST00000254351 RARSP54136 660 aaKnown RBP18.15■□□□□ 0.5
SDC1-201ENST00000254351 RWDD1Q9H446 243 aaPredicted RBP18.14■□□□□ 0.49
SDC1-201ENST00000254351 A2MP01023 1474 aa18.14■□□□□ 0.49
SDC1-201ENST00000254351 NLRP1Q9C000 1473 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms