RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 FBXW7Q969H0 707 aa23.32■■□□□ 1.32
SMPD3-201ENST00000219334 API5Q9BZZ5 524 aaKnown RBP23.32■■□□□ 1.32
SMPD3-201ENST00000219334 APAF1O14727 1248 aa23.31■■□□□ 1.32
SMPD3-201ENST00000219334 IFIT2P09913 472 aaKnown RBP23.31■■□□□ 1.32
SMPD3-201ENST00000219334 PDE4CQ08493 712 aa23.31■■□□□ 1.32
SMPD3-201ENST00000219334 FKBP5Q13451 457 aaPredicted RBP23.3■■□□□ 1.32
SMPD3-201ENST00000219334 SMARCA4P51532 1647 aa23.3■■□□□ 1.32
SMPD3-201ENST00000219334 APPP05067 770 aa23.3■■□□□ 1.32
SMPD3-201ENST00000219334 G3BP1Q13283 466 aaKnown RBP eCLIP23.29■■□□□ 1.32
SMPD3-201ENST00000219334 PHF14O94880 888 aa23.29■■□□□ 1.32
SMPD3-201ENST00000219334 RBM33Q96EV2 1170 aaKnown RBP23.28■■□□□ 1.32
SMPD3-201ENST00000219334 TPM3P06753 285 aa23.28■■□□□ 1.32
SMPD3-201ENST00000219334 TPD52L1Q16890 204 aaPredicted RBP23.27■■□□□ 1.32
SMPD3-201ENST00000219334 PES1O00541 588 aaKnown RBP23.27■■□□□ 1.32
SMPD3-201ENST00000219334 FGD5Q6ZNL6 1462 aa23.27■■□□□ 1.32
SMPD3-201ENST00000219334 ZKSCAN1P17029 563 aaPredicted RBP23.26■■□□□ 1.31
SMPD3-201ENST00000219334 DHX16O60231 1041 aaKnown RBP23.26■■□□□ 1.31
SMPD3-201ENST00000219334 CENPQQ7L2Z9 268 aaPredicted RBP23.26■■□□□ 1.31
SMPD3-201ENST00000219334 ATP6V1DQ9Y5K8 247 aa23.26■■□□□ 1.31
SMPD3-201ENST00000219334 TSPYL4Q9UJ04 414 aa23.26■■□□□ 1.31
SMPD3-201ENST00000219334 NLRP6P59044 892 aa23.26■■□□□ 1.31
SMPD3-201ENST00000219334 DDX19BQ9UMR2 479 aa23.26■■□□□ 1.31
SMPD3-201ENST00000219334 FOXD4L5Q5VV16 416 aaPredicted RBP23.26■■□□□ 1.31
SMPD3-201ENST00000219334 FOXD4L4Q8WXT5 416 aaPredicted RBP23.26■■□□□ 1.31
SMPD3-201ENST00000219334 PRKRIP1Q9H875 184 aaPredicted RBP23.26■■□□□ 1.31
SMPD3-201ENST00000219334 MIA2Q96PC5 1412 aa23.25■■□□□ 1.31
SMPD3-201ENST00000219334 TRDNQ13061 729 aa23.24■■□□□ 1.31
SMPD3-201ENST00000219334 TRIM29Q14134 588 aa23.24■■□□□ 1.31
SMPD3-201ENST00000219334 COG6Q9Y2V7 657 aa23.24■■□□□ 1.31
SMPD3-201ENST00000219334 IGF1RP08069 1367 aa23.23■■□□□ 1.31
SMPD3-201ENST00000219334 GNAI1P63096 354 aa23.23■■□□□ 1.31
SMPD3-201ENST00000219334 ROCK1Q13464 1354 aa23.23■■□□□ 1.31
SMPD3-201ENST00000219334 GPRASP1Q5JY77 1395 aa23.23■■□□□ 1.31
SMPD3-201ENST00000219334 DCAF8L1A6NGE4 600 aa23.23■■□□□ 1.31
SMPD3-201ENST00000219334 NUTM2GQ5VZR2 741 aa23.23■■□□□ 1.31
SMPD3-201ENST00000219334 CWC22Q9HCG8 908 aaKnown RBP23.22■■□□□ 1.31
SMPD3-201ENST00000219334 RAD54L2Q9Y4B4 1467 aa23.22■■□□□ 1.31
SMPD3-201ENST00000219334 A0A0U1RQG5 324 aaPredicted RBP23.22■■□□□ 1.31
SMPD3-201ENST00000219334 GOLGA6L3A6NEY3 463 aa23.22■■□□□ 1.31
SMPD3-201ENST00000219334 PROSER2Q86WR7 435 aaPredicted RBP23.22■■□□□ 1.31
SMPD3-201ENST00000219334 CPLX1O14810 134 aa23.21■■□□□ 1.31
SMPD3-201ENST00000219334 MCTP1Q6DN14 999 aa23.21■■□□□ 1.31
SMPD3-201ENST00000219334 RIC3Q7Z5B4 369 aa23.21■■□□□ 1.31
SMPD3-201ENST00000219334 TSR1Q2NL82 804 aaKnown RBP23.21■■□□□ 1.31
SMPD3-201ENST00000219334 TXNDC2Q86VQ3 553 aa23.21■■□□□ 1.31
SMPD3-201ENST00000219334 REC8O95072 547 aa23.21■■□□□ 1.31
SMPD3-201ENST00000219334 HSP90AB4PQ58FF6 505 aa23.21■■□□□ 1.31
SMPD3-201ENST00000219334 RUNDC1Q96C34 613 aa23.21■■□□□ 1.31
SMPD3-201ENST00000219334 WASHC2AQ641Q2 1341 aa23.2■■□□□ 1.3
SMPD3-201ENST00000219334 ZNF644Q9H582 1327 aaPredicted RBP23.2■■□□□ 1.3
SMPD3-201ENST00000219334 PLIN1O60240 522 aa23.19■■□□□ 1.3
SMPD3-201ENST00000219334 TPM2P07951 284 aa23.19■■□□□ 1.3
SMPD3-201ENST00000219334 HMOX1P09601 288 aa23.19■■□□□ 1.3
SMPD3-201ENST00000219334 DZIP1LQ8IYY4 767 aaKnown RBP23.19■■□□□ 1.3
SMPD3-201ENST00000219334 AQRO60306 1485 aaKnown RBP eCLIP23.19■■□□□ 1.3
SMPD3-201ENST00000219334 GGNBP2Q9H3C7 697 aa23.19■■□□□ 1.3
SMPD3-201ENST00000219334 RNF20Q5VTR2 975 aa23.18■■□□□ 1.3
SMPD3-201ENST00000219334 DEKP35659 375 aaKnown RBP23.18■■□□□ 1.3
SMPD3-201ENST00000219334 RUSC2Q8N2Y8 1516 aa23.17■■□□□ 1.3
SMPD3-201ENST00000219334 CABP2Q9NPB3 220 aa23.17■■□□□ 1.3
SMPD3-201ENST00000219334 ESCO1Q5FWF5 840 aa23.17■■□□□ 1.3
SMPD3-201ENST00000219334 ERICH2A1L162 156 aa23.17■■□□□ 1.3
SMPD3-201ENST00000219334 IPO9Q96P70 1041 aaKnown RBP23.16■■□□□ 1.3
SMPD3-201ENST00000219334 AIMP1Q12904 312 aaKnown RBP23.16■■□□□ 1.3
SMPD3-201ENST00000219334 TMEM132EQ6IEE7 984 aa23.16■■□□□ 1.3
SMPD3-201ENST00000219334 CCDC47Q96A33 483 aaKnown RBP23.16■■□□□ 1.3
SMPD3-201ENST00000219334 AFAP1Q8N556 730 aa23.15■■□□□ 1.3
SMPD3-201ENST00000219334 ABTB2Q8N961 1025 aa23.15■■□□□ 1.3
SMPD3-201ENST00000219334 ANO2Q9NQ90 1003 aa23.15■■□□□ 1.3
SMPD3-201ENST00000219334 USP35Q9P2H5 1018 aa23.15■■□□□ 1.3
SMPD3-201ENST00000219334 RRP1P56182 461 aaKnown RBP23.14■■□□□ 1.3
SMPD3-201ENST00000219334 FAM161AQ3B820 660 aa23.14■■□□□ 1.29
SMPD3-201ENST00000219334 NFXL1Q6ZNB6 911 aa23.14■■□□□ 1.29
SMPD3-201ENST00000219334 BECN2A8MW95 431 aa23.13■■□□□ 1.29
SMPD3-201ENST00000219334 TPM1P09493 284 aa23.13■■□□□ 1.29
SMPD3-201ENST00000219334 CRBNQ96SW2 442 aa23.13■■□□□ 1.29
SMPD3-201ENST00000219334 ANKRD50Q9ULJ7 1429 aa23.13■■□□□ 1.29
SMPD3-201ENST00000219334 NEUROD6Q96NK8 337 aa23.13■■□□□ 1.29
SMPD3-201ENST00000219334 GOLGA6L19H0YKK7 550 aa23.12■■□□□ 1.29
SMPD3-201ENST00000219334 THEMISQ8N1K5 641 aaPredicted RBP23.12■■□□□ 1.29
SMPD3-201ENST00000219334 ERC2O15083 957 aa23.12■■□□□ 1.29
SMPD3-201ENST00000219334 DDX11L8A8MPP1 907 aa23.12■■□□□ 1.29
SMPD3-201ENST00000219334 GOLGA6L1Q8N7Z2 621 aa23.12■■□□□ 1.29
SMPD3-201ENST00000219334 CCDC43Q96MW1 224 aaKnown RBP23.11■■□□□ 1.29
SMPD3-201ENST00000219334 WWC1Q8IX03 1113 aa23.1■■□□□ 1.29
SMPD3-201ENST00000219334 ZBED9Q6R2W3 1325 aa23.09■■□□□ 1.29
SMPD3-201ENST00000219334 EXOC6Q8TAG9 804 aa23.09■■□□□ 1.29
SMPD3-201ENST00000219334 FOXD4L6Q3SYB3 417 aaPredicted RBP23.09■■□□□ 1.29
SMPD3-201ENST00000219334 SAMD1Q6SPF0 538 aaPredicted RBP23.09■■□□□ 1.29
SMPD3-201ENST00000219334 FOXD4L3Q6VB84 417 aaPredicted RBP23.09■■□□□ 1.29
SMPD3-201ENST00000219334 FGD6Q6ZV73 1430 aa23.09■■□□□ 1.29
SMPD3-201ENST00000219334 PLEKHO1Q53GL0 409 aaPredicted RBP23.08■■□□□ 1.29
SMPD3-201ENST00000219334 ARHGAP5Q13017 1502 aa23.08■■□□□ 1.29
SMPD3-201ENST00000219334 CUX1P39880 1505 aa23.08■■□□□ 1.28
SMPD3-201ENST00000219334 SF3B2Q13435 895 aaKnown RBP23.08■■□□□ 1.28
SMPD3-201ENST00000219334 CCDC27Q2M243 656 aa23.07■■□□□ 1.28
SMPD3-201ENST00000219334 GAS2L2Q8NHY3 880 aa23.07■■□□□ 1.28
SMPD3-201ENST00000219334 STRN4Q9NRL3 753 aa23.07■■□□□ 1.28
SMPD3-201ENST00000219334 DDX49Q9Y6V7 483 aaKnown RBP23.07■■□□□ 1.28
SMPD3-201ENST00000219334 UBTFL1P0CB47 393 aaPredicted RBP23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms