RNA–Protein interactions for RNA: ENST00000212355.8

TGFBR3-201, Transcript of transforming growth factor beta receptor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TGFBR3, Length 6,465 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFBR3-201ENST00000212355 C9orf78Q9NZ63 289 aaPredicted RBP16.72■□□□□ 0.27
TGFBR3-201ENST00000212355 ZNF644Q9H582 1327 aaPredicted RBP16.72■□□□□ 0.27
TGFBR3-201ENST00000212355 BECN2A8MW95 431 aa16.72■□□□□ 0.27
TGFBR3-201ENST00000212355 VPS37CA5D8V6 355 aaPredicted RBP16.72■□□□□ 0.27
TGFBR3-201ENST00000212355 FYB1O15117 783 aa16.72■□□□□ 0.27
TGFBR3-201ENST00000212355 CDCA7LQ96GN5 454 aa16.72■□□□□ 0.27
TGFBR3-201ENST00000212355 TPM3P06753 285 aa16.71■□□□□ 0.27
TGFBR3-201ENST00000212355 E9PSI1 815 aa16.71■□□□□ 0.27
TGFBR3-201ENST00000212355 C1orf115Q9H7X2 142 aa16.71■□□□□ 0.27
TGFBR3-201ENST00000212355 PDE3BQ13370 1112 aa16.71■□□□□ 0.27
TGFBR3-201ENST00000212355 PCMTD1Q96MG8 357 aaPredicted RBP16.71■□□□□ 0.27
TGFBR3-201ENST00000212355 EVA1CP58658 441 aa16.71■□□□□ 0.27
TGFBR3-201ENST00000212355 ZBED9Q6R2W3 1325 aa16.7■□□□□ 0.26
TGFBR3-201ENST00000212355 ZNF771Q7L3S4 317 aaPredicted RBP16.7■□□□□ 0.26
TGFBR3-201ENST00000212355 MPNDQ8N594 471 aa16.7■□□□□ 0.26
TGFBR3-201ENST00000212355 LMOD3Q0VAK6 560 aa16.7■□□□□ 0.26
TGFBR3-201ENST00000212355 CCDC27Q2M243 656 aa16.69■□□□□ 0.26
TGFBR3-201ENST00000212355 CGNL1Q0VF96 1302 aa16.68■□□□□ 0.26
TGFBR3-201ENST00000212355 CCDC18Q5T9S5 1454 aa16.68■□□□□ 0.26
TGFBR3-201ENST00000212355 RNF214Q8ND24 703 aa16.68■□□□□ 0.26
TGFBR3-201ENST00000212355 BICD2Q8TD16 824 aa16.68■□□□□ 0.26
TGFBR3-201ENST00000212355 CABP2Q9NPB3 220 aa16.68■□□□□ 0.26
TGFBR3-201ENST00000212355 GGNBP2Q9H3C7 697 aa16.68■□□□□ 0.26
TGFBR3-201ENST00000212355 FKBP5Q13451 457 aaPredicted RBP16.67■□□□□ 0.26
TGFBR3-201ENST00000212355 TMEM132EQ6IEE7 984 aa16.67■□□□□ 0.26
TGFBR3-201ENST00000212355 TEFQ10587 303 aa16.67■□□□□ 0.26
TGFBR3-201ENST00000212355 DZIP1LQ8IYY4 767 aaKnown RBP16.67■□□□□ 0.26
TGFBR3-201ENST00000212355 IFIT2P09913 472 aaKnown RBP16.66■□□□□ 0.26
TGFBR3-201ENST00000212355 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.66■□□□□ 0.26
TGFBR3-201ENST00000212355 FAM177BA6PVY3 158 aa16.65■□□□□ 0.26
TGFBR3-201ENST00000212355 AKAP17AQ02040 695 aaKnown RBP16.65■□□□□ 0.26
TGFBR3-201ENST00000212355 STK11IPQ8N1F8 1099 aa16.65■□□□□ 0.26
TGFBR3-201ENST00000212355 DHX16O60231 1041 aaKnown RBP16.65■□□□□ 0.26
TGFBR3-201ENST00000212355 DIAPH1O60610 1272 aaKnown RBP16.64■□□□□ 0.26
TGFBR3-201ENST00000212355 TTLL5Q6EMB2 1281 aa16.64■□□□□ 0.25
TGFBR3-201ENST00000212355 JPH4Q96JJ6 628 aa16.64■□□□□ 0.25
TGFBR3-201ENST00000212355 BRPF3Q9ULD4 1205 aa16.64■□□□□ 0.25
TGFBR3-201ENST00000212355 NFKBIBQ15653 356 aa16.63■□□□□ 0.25
TGFBR3-201ENST00000212355 NFXL1Q6ZNB6 911 aa16.63■□□□□ 0.25
TGFBR3-201ENST00000212355 EVC2Q86UK5 1308 aa16.63■□□□□ 0.25
TGFBR3-201ENST00000212355 MAP4K4O95819 1239 aaPredicted RBP16.63■□□□□ 0.25
TGFBR3-201ENST00000212355 CEP89Q96ST8 783 aa16.63■□□□□ 0.25
TGFBR3-201ENST00000212355 PRDM2Q13029 1718 aa16.63■□□□□ 0.25
TGFBR3-201ENST00000212355 HOMER1Q86YM7 354 aa16.62■□□□□ 0.25
TGFBR3-201ENST00000212355 TTC5Q8N0Z6 440 aa16.62■□□□□ 0.25
TGFBR3-201ENST00000212355 KIF7Q2M1P5 1343 aa16.62■□□□□ 0.25
TGFBR3-201ENST00000212355 PHLDB1Q86UU1 1377 aa16.62■□□□□ 0.25
TGFBR3-201ENST00000212355 TSPYL4Q9UJ04 414 aa16.62■□□□□ 0.25
TGFBR3-201ENST00000212355 NEUROD6Q96NK8 337 aa16.62■□□□□ 0.25
TGFBR3-201ENST00000212355 C11orf95C9JLR9 678 aaPredicted RBP16.61■□□□□ 0.25
TGFBR3-201ENST00000212355 RSPH6AQ9H0K4 717 aa16.61■□□□□ 0.25
TGFBR3-201ENST00000212355 IL27Q8NEV9 243 aa16.61■□□□□ 0.25
TGFBR3-201ENST00000212355 C22orf23Q9BZE7 217 aa16.61■□□□□ 0.25
TGFBR3-201ENST00000212355 CCDC34Q96HJ3 373 aa16.61■□□□□ 0.25
TGFBR3-201ENST00000212355 ADAMTS8Q9UP79 889 aa16.61■□□□□ 0.25
TGFBR3-201ENST00000212355 SKIDA1Q1XH10 827 aa16.6■□□□□ 0.25
TGFBR3-201ENST00000212355 R3HCC1Q9Y3T6 440 aaKnown RBP16.6■□□□□ 0.25
TGFBR3-201ENST00000212355 TSR1Q2NL82 804 aaKnown RBP16.6■□□□□ 0.25
TGFBR3-201ENST00000212355 DDX19BQ9UMR2 479 aa16.59■□□□□ 0.25
TGFBR3-201ENST00000212355 CEBPZQ03701 1054 aaKnown RBP16.59■□□□□ 0.25
TGFBR3-201ENST00000212355 KLHL34Q8N239 644 aa16.59■□□□□ 0.25
TGFBR3-201ENST00000212355 CPLX1O14810 134 aa16.59■□□□□ 0.25
TGFBR3-201ENST00000212355 CYB5RLQ6IPT4 315 aa16.59■□□□□ 0.25
TGFBR3-201ENST00000212355 SYNE3Q6ZMZ3 975 aa16.59■□□□□ 0.25
TGFBR3-201ENST00000212355 SKAP1Q86WV1 359 aa16.58■□□□□ 0.25
TGFBR3-201ENST00000212355 VPS37DQ86XT2 251 aa16.58■□□□□ 0.25
TGFBR3-201ENST00000212355 IFT57Q9NWB7 429 aa16.58■□□□□ 0.25
TGFBR3-201ENST00000212355 PSME1Q06323 249 aa16.58■□□□□ 0.24
TGFBR3-201ENST00000212355 RBM10P98175 930 aaKnown RBP16.58■□□□□ 0.24
TGFBR3-201ENST00000212355 TRIM29Q14134 588 aa16.58■□□□□ 0.24
TGFBR3-201ENST00000212355 SMC3Q9UQE7 1217 aa16.58■□□□□ 0.24
TGFBR3-201ENST00000212355 USP35Q9P2H5 1018 aa16.57■□□□□ 0.24
TGFBR3-201ENST00000212355 CHMP4CQ96CF2 233 aa16.57■□□□□ 0.24
TGFBR3-201ENST00000212355 NEXNQ0ZGT2 675 aa16.57■□□□□ 0.24
TGFBR3-201ENST00000212355 SKOR2Q2VWA4 1001 aaPredicted RBP16.56■□□□□ 0.24
TGFBR3-201ENST00000212355 AKNAQ7Z591 1439 aa16.56■□□□□ 0.24
TGFBR3-201ENST00000212355 PDILTQ8N807 584 aa16.56■□□□□ 0.24
TGFBR3-201ENST00000212355 TSR2Q969E8 191 aaKnown RBP16.56■□□□□ 0.24
TGFBR3-201ENST00000212355 CHMP5Q9NZZ3 219 aa16.56■□□□□ 0.24
TGFBR3-201ENST00000212355 BCAR3O75815 825 aa16.55■□□□□ 0.24
TGFBR3-201ENST00000212355 ZKSCAN1P17029 563 aaPredicted RBP16.55■□□□□ 0.24
TGFBR3-201ENST00000212355 NAP1L1P55209 391 aaKnown RBP16.55■□□□□ 0.24
TGFBR3-201ENST00000212355 G3BP1Q13283 466 aaKnown RBP eCLIP16.55■□□□□ 0.247e-7■□□□□ 9.5
TGFBR3-201ENST00000212355 FANCIQ9NVI1 1328 aa16.55■□□□□ 0.24
TGFBR3-201ENST00000212355 WASHC4Q2M389 1173 aa16.55■□□□□ 0.24
TGFBR3-201ENST00000212355 RUNDC1Q96C34 613 aa16.55■□□□□ 0.24
TGFBR3-201ENST00000212355 KIF3AQ9Y496 699 aa16.55■□□□□ 0.24
TGFBR3-201ENST00000212355 DHX37Q8IY37 1157 aaKnown RBP16.55■□□□□ 0.24
TGFBR3-201ENST00000212355 CAVIN1Q6NZI2 390 aaKnown RBP16.55■□□□□ 0.24
TGFBR3-201ENST00000212355 WASHC2AQ641Q2 1341 aa16.55■□□□□ 0.24
TGFBR3-201ENST00000212355 REC8O95072 547 aa16.54■□□□□ 0.24
TGFBR3-201ENST00000212355 ATP2B1P20020 1258 aa16.54■□□□□ 0.24
TGFBR3-201ENST00000212355 SMARCA2P51531 1590 aa16.54■□□□□ 0.24
TGFBR3-201ENST00000212355 PDS5BQ9NTI5 1447 aa16.54■□□□□ 0.24
TGFBR3-201ENST00000212355 RIC3Q7Z5B4 369 aa16.53■□□□□ 0.24
TGFBR3-201ENST00000212355 DNAJC2Q99543 621 aaKnown RBP16.53■□□□□ 0.24
TGFBR3-201ENST00000212355 SPC24Q8NBT2 197 aa16.53■□□□□ 0.24
TGFBR3-201ENST00000212355 CCDC7Q96M83 1385 aa16.53■□□□□ 0.24
TGFBR3-201ENST00000212355 SASS6Q6UVJ0 657 aa16.53■□□□□ 0.24
TGFBR3-201ENST00000212355 TOP2AP11388 1531 aaKnown RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms