RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 CCDC70Q6NSX1 233 aa12.75□□□□□ -0.37
VCL-201ENST00000211998 FHOD3Q2V2M9 1422 aa12.75□□□□□ -0.37
VCL-201ENST00000211998 RDXP35241 583 aaKnown RBP12.74□□□□□ -0.37
VCL-201ENST00000211998 HSP90B2PQ58FF3 399 aa12.74□□□□□ -0.37
VCL-201ENST00000211998 PDCL3Q9H2J4 239 aa12.74□□□□□ -0.37
VCL-201ENST00000211998 KIF15Q9NS87 1388 aa12.74□□□□□ -0.37
VCL-201ENST00000211998 CAVIN1Q6NZI2 390 aaKnown RBP12.74□□□□□ -0.37
VCL-201ENST00000211998 CHMP3Q9Y3E7 222 aa12.74□□□□□ -0.37
VCL-201ENST00000211998 H0YHG0 523 aa12.73□□□□□ -0.37
VCL-201ENST00000211998 GORABQ5T7V8 394 aa12.73□□□□□ -0.37
VCL-201ENST00000211998 L3MBTL2Q969R5 705 aa12.73□□□□□ -0.37
VCL-201ENST00000211998 NGDNQ8NEJ9 315 aaKnown RBP12.73□□□□□ -0.37
VCL-201ENST00000211998 TPD52L1Q16890 204 aaPredicted RBP12.73□□□□□ -0.37
VCL-201ENST00000211998 ACBD3Q9H3P7 528 aa12.73□□□□□ -0.37
VCL-201ENST00000211998 ZNF330Q9Y3S2 320 aaPredicted RBP12.73□□□□□ -0.37
VCL-201ENST00000211998 BCL2L13Q9BXK5 485 aa12.72□□□□□ -0.37
VCL-201ENST00000211998 CLSTN1O94985 981 aa12.72□□□□□ -0.37
VCL-201ENST00000211998 BACH2Q9BYV9 841 aa12.72□□□□□ -0.37
VCL-201ENST00000211998 TAF7LQ5H9L4 462 aa12.72□□□□□ -0.37
VCL-201ENST00000211998 H3BQV1 296 aa12.71□□□□□ -0.37
VCL-201ENST00000211998 IFFO2Q5TF58 517 aa12.71□□□□□ -0.37
VCL-201ENST00000211998 CCDC144AA2RUR9 1427 aa12.71□□□□□ -0.38
VCL-201ENST00000211998 AMPHP49418 695 aa12.71□□□□□ -0.38
VCL-201ENST00000211998 LEKR1Q6ZMV7 388 aa12.71□□□□□ -0.38
VCL-201ENST00000211998 AEBP1Q8IUX7 1158 aa12.71□□□□□ -0.38
VCL-201ENST00000211998 JPH4Q96JJ6 628 aa12.71□□□□□ -0.38
VCL-201ENST00000211998 ZHX1Q9UKY1 873 aaPredicted RBP12.7□□□□□ -0.38
VCL-201ENST00000211998 WIZO95785 1651 aa12.69□□□□□ -0.38
VCL-201ENST00000211998 TSR1Q2NL82 804 aaKnown RBP12.69□□□□□ -0.38
VCL-201ENST00000211998 AK7Q96M32 723 aa12.69□□□□□ -0.38
VCL-201ENST00000211998 ERICH4A6NGS2 130 aa12.69□□□□□ -0.38
VCL-201ENST00000211998 KIF3AQ9Y496 699 aa12.69□□□□□ -0.38
VCL-201ENST00000211998 TPM1P09493 284 aa12.69□□□□□ -0.38
VCL-201ENST00000211998 E9PSI1 815 aa12.68□□□□□ -0.38
VCL-201ENST00000211998 CBX1P83916 185 aa12.68□□□□□ -0.38
VCL-201ENST00000211998 PES1O00541 588 aaKnown RBP12.68□□□□□ -0.38
VCL-201ENST00000211998 ZKSCAN2Q63HK3 967 aa12.68□□□□□ -0.38
VCL-201ENST00000211998 SASS6Q6UVJ0 657 aa12.68□□□□□ -0.38
VCL-201ENST00000211998 RILPL2Q969X0 211 aa12.68□□□□□ -0.38
VCL-201ENST00000211998 HSP90AB3PQ58FF7 597 aa12.68□□□□□ -0.38
VCL-201ENST00000211998 TSPY26PQ9H489 355 aa12.68□□□□□ -0.38
VCL-201ENST00000211998 CCDC9Q9Y3X0 531 aaKnown RBP12.68□□□□□ -0.38
VCL-201ENST00000211998 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.67□□□□□ -0.38
VCL-201ENST00000211998 REC8O95072 547 aa12.67□□□□□ -0.38
VCL-201ENST00000211998 BICD2Q8TD16 824 aa12.67□□□□□ -0.38
VCL-201ENST00000211998 RUFY1Q96T51 708 aa12.67□□□□□ -0.38
VCL-201ENST00000211998 RRP7AQ9Y3A4 280 aaKnown RBP12.67□□□□□ -0.38
VCL-201ENST00000211998 FAM184AQ8NB25 1140 aa12.66□□□□□ -0.38
VCL-201ENST00000211998 ZSCAN30Q86W11 494 aa12.66□□□□□ -0.38
VCL-201ENST00000211998 PDCL2Q8N4E4 241 aa12.66□□□□□ -0.38
VCL-201ENST00000211998 VGFO15240 615 aaPredicted RBP12.66□□□□□ -0.38
VCL-201ENST00000211998 CGNQ9P2M7 1197 aaKnown RBP12.66□□□□□ -0.38
VCL-201ENST00000211998 BBXQ8WY36 941 aaPredicted RBP12.65□□□□□ -0.38
VCL-201ENST00000211998 PRPF40AO75400 957 aaKnown RBP12.65□□□□□ -0.38
VCL-201ENST00000211998 SLC4A10Q6U841 1118 aa12.65□□□□□ -0.38
VCL-201ENST00000211998 DEF6Q9H4E7 631 aa12.65□□□□□ -0.38
VCL-201ENST00000211998 ATAD2BQ9ULI0 1458 aa12.65□□□□□ -0.38
VCL-201ENST00000211998 RRP12Q5JTH9 1297 aaKnown RBP12.65□□□□□ -0.38
VCL-201ENST00000211998 MPNDQ8N594 471 aa12.65□□□□□ -0.39
VCL-201ENST00000211998 RASSF8Q8NHQ8 419 aa12.64□□□□□ -0.39
VCL-201ENST00000211998 EVC2Q86UK5 1308 aa12.64□□□□□ -0.39
VCL-201ENST00000211998 MBD3O95983 291 aa12.64□□□□□ -0.39
VCL-201ENST00000211998 TRAK1Q9UPV9 953 aa12.64□□□□□ -0.39
VCL-201ENST00000211998 CCDC191Q8NCU4 936 aa12.63□□□□□ -0.39
VCL-201ENST00000211998 CCDC112Q8NEF3 446 aa12.63□□□□□ -0.39
VCL-201ENST00000211998 FBXW7Q969H0 707 aa12.63□□□□□ -0.39
VCL-201ENST00000211998 PTPRGP23470 1445 aa12.63□□□□□ -0.39
VCL-201ENST00000211998 TRIM5Q9C035 493 aa12.63□□□□□ -0.39
VCL-201ENST00000211998 MCM4P33991 863 aa12.63□□□□□ -0.39
VCL-201ENST00000211998 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.63□□□□□ -0.396e-7■■■■□ 23.3
VCL-201ENST00000211998 CHMP4CQ96CF2 233 aa12.63□□□□□ -0.39
VCL-201ENST00000211998 SKIDA1Q1XH10 827 aa12.63□□□□□ -0.39
VCL-201ENST00000211998 SPC24Q8NBT2 197 aa12.62□□□□□ -0.39
VCL-201ENST00000211998 NUTM2DQ5VT03 806 aaPredicted RBP12.62□□□□□ -0.39
VCL-201ENST00000211998 VPS37CA5D8V6 355 aaPredicted RBP12.62□□□□□ -0.39
VCL-201ENST00000211998 ERCC4Q92889 916 aaPredicted RBP12.62□□□□□ -0.39
VCL-201ENST00000211998 COG3Q96JB2 828 aa12.62□□□□□ -0.39
VCL-201ENST00000211998 TSPYL1Q9H0U9 437 aa12.62□□□□□ -0.39
VCL-201ENST00000211998 FANCD2Q9BXW9 1451 aa12.62□□□□□ -0.39
VCL-201ENST00000211998 LETM1O95202 739 aaPredicted RBP12.62□□□□□ -0.39
VCL-201ENST00000211998 G3V3G9 751 aa12.61□□□□□ -0.39
VCL-201ENST00000211998 DCAF8Q5TAQ9 597 aa12.61□□□□□ -0.39
VCL-201ENST00000211998 DDX19BQ9UMR2 479 aa12.61□□□□□ -0.39
VCL-201ENST00000211998 IPO7O95373 1038 aaKnown RBP12.61□□□□□ -0.39
VCL-201ENST00000211998 SMARCA4P51532 1647 aa12.61□□□□□ -0.39
VCL-201ENST00000211998 SMC3Q9UQE7 1217 aa12.61□□□□□ -0.39
VCL-201ENST00000211998 CDR1P51861 262 aa12.6□□□□□ -0.39
VCL-201ENST00000211998 NCBP3Q53F19 620 aaKnown RBP12.6□□□□□ -0.39
VCL-201ENST00000211998 LTV1Q96GA3 475 aaPredicted RBP12.6□□□□□ -0.39
VCL-201ENST00000211998 PLCD4Q9BRC7 762 aa12.6□□□□□ -0.39
VCL-201ENST00000211998 PANK3Q9H999 370 aa12.6□□□□□ -0.39
VCL-201ENST00000211998 ST20-MTHFSA0A0A6YYL1 179 aa12.59□□□□□ -0.39
VCL-201ENST00000211998 C1orf141Q5JVX7 400 aa12.59□□□□□ -0.39
VCL-201ENST00000211998 APAF1O14727 1248 aa12.59□□□□□ -0.39
VCL-201ENST00000211998 DZIP1LQ8IYY4 767 aaKnown RBP12.59□□□□□ -0.39
VCL-201ENST00000211998 NGEFQ8N5V2 710 aa12.59□□□□□ -0.39
VCL-201ENST00000211998 CEP89Q96ST8 783 aa12.59□□□□□ -0.39
VCL-201ENST00000211998 LNPKQ9C0E8 428 aa12.59□□□□□ -0.39
VCL-201ENST00000211998 GTF2E1P29083 439 aaPredicted RBP12.59□□□□□ -0.39
VCL-201ENST00000211998 INTS3Q68E01 1043 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms