RNA–Protein interactions for RNA: YJL001W

PRE3, Transcript of Beta 1 subunit of the 20S proteasome, yeast

Gene PRE3, Length 648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE3	YJL001W	UPS1	Q05776	175 aa		4.92	□□□□□ -1.62
PRE3	YJL001W	YLR345W	Q06137	509 aa		4.92	□□□□□ -1.62
PRE3	YJL001W	REP2	P03872	296 aa		4.91	□□□□□ -1.62
PRE3	YJL001W	RPL25	P04456	142 aa	Known RBP	4.91	□□□□□ -1.62
PRE3	YJL001W	YGL041W-A	P0C5N3	154 aa		4.91	□□□□□ -1.62
PRE3	YJL001W	ATR1	P13090	542 aa		4.91	□□□□□ -1.62
PRE3	YJL001W	PHO85	P17157	305 aa		4.91	□□□□□ -1.62
PRE3	YJL001W	ECM31	P38122	312 aa		4.91	□□□□□ -1.62
PRE3	YJL001W	SDS24	P38314	527 aa		4.91	□□□□□ -1.62
PRE3	YJL001W	LYS20	P48570	428 aa	Known RBP	4.91	□□□□□ -1.62
PRE3	YJL001W	YNL234W	P53857	426 aa		4.91	□□□□□ -1.62
PRE3	YJL001W	YMR099C	Q03161	297 aa	Known RBP	4.91	□□□□□ -1.62
PRE3	YJL001W	FIN1	Q03898	291 aa		4.91	□□□□□ -1.62
PRE3	YJL001W	YMR087W	Q04299	284 aa		4.91	□□□□□ -1.62
PRE3	YJL001W	YLR173W	Q06247	608 aa		4.91	□□□□□ -1.62
PRE3	YJL001W	MRPL23	Q12487	163 aa	Predicted RBP	4.91	□□□□□ -1.62
PRE3	YJL001W	INO2	P26798	304 aa		4.9	□□□□□ -1.63
PRE3	YJL001W	ZUO1	P32527	433 aa	Known RBP	4.9	□□□□□ -1.63
PRE3	YJL001W	CPR5	P35176	225 aa		4.9	□□□□□ -1.63
PRE3	YJL001W	TTI2	P47168	421 aa		4.9	□□□□□ -1.63
PRE3	YJL001W	HEM25	Q07534	307 aa		4.9	□□□□□ -1.63
PRE3	YJL001W	YOR186W	Q08560	144 aa		4.9	□□□□□ -1.63
PRE3	YJL001W	VAM3	Q12241	283 aa		4.9	□□□□□ -1.63
PRE3	YJL001W	FRE6	Q12473	712 aa		4.9	□□□□□ -1.63
PRE3	YJL001W	MATALPHA1	P0CY06	175 aa		4.89	□□□□□ -1.63
PRE3	YJL001W	HMLALPHA1	P0CY07	175 aa		4.89	□□□□□ -1.63
PRE3	YJL001W	PEX4	P29340	183 aa		4.89	□□□□□ -1.63
PRE3	YJL001W	CMC1	P36064	111 aa		4.89	□□□□□ -1.63
PRE3	YJL001W	PMU1	P36069	295 aa		4.89	□□□□□ -1.63
PRE3	YJL001W	RPL32	P38061	130 aa	Known RBP	4.89	□□□□□ -1.63
PRE3	YJL001W	YJR056C	P47115	236 aa		4.89	□□□□□ -1.63
PRE3	YJL001W	YGL262W	P53054	175 aa		4.89	□□□□□ -1.63
PRE3	YJL001W	YGL204C	P53089	101 aa		4.89	□□□□□ -1.63
PRE3	YJL001W	POP6	P53218	158 aa		4.89	□□□□□ -1.63
PRE3	YJL001W	GRX5	Q02784	150 aa		4.89	□□□□□ -1.63
PRE3	YJL001W	ADK1	P07170	222 aa	Known RBP	4.88	□□□□□ -1.63
PRE3	YJL001W	COX9	P07255	59 aa		4.88	□□□□□ -1.63
PRE3	YJL001W	YHR212W-A	P0CX91	67 aa		4.88	□□□□□ -1.63
PRE3	YJL001W	AUA1	P32450	94 aa		4.88	□□□□□ -1.63
PRE3	YJL001W	PRS2	P38620	318 aa	Known RBP	4.88	□□□□□ -1.63
PRE3	YJL001W	MDM31	P38880	579 aa		4.88	□□□□□ -1.63
PRE3	YJL001W	WWM1	P43582	211 aa	Known RBP	4.88	□□□□□ -1.63
PRE3	YJL001W	PAU12	P53343	120 aa		4.88	□□□□□ -1.63
PRE3	YJL001W	HSK3	P69852	69 aa		4.88	□□□□□ -1.63
PRE3	YJL001W	RCF1	Q03713	159 aa		4.88	□□□□□ -1.63
PRE3	YJL001W	YMR252C	Q04814	134 aa		4.88	□□□□□ -1.63
PRE3	YJL001W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
PRE3	YJL001W	MRP1	P10662	321 aa	Known RBP	4.87	□□□□□ -1.63
PRE3	YJL001W	IDP1	P21954	428 aa	Known RBP	4.87	□□□□□ -1.63
PRE3	YJL001W	DPB2	P24482	689 aa	Predicted RBP	4.87	□□□□□ -1.63
PRE3	YJL001W	RNA14	P25298	677 aa	Known RBP	4.87	□□□□□ -1.63
PRE3	YJL001W	SOP4	P39543	234 aa	Predicted RBP	4.87	□□□□□ -1.63
PRE3	YJL001W	PEX30	Q06169	523 aa		4.87	□□□□□ -1.63
PRE3	YJL001W	NMA1	Q06178	401 aa	Known RBP	4.87	□□□□□ -1.63
PRE3	YJL001W	ATG40	Q99325	256 aa		4.87	□□□□□ -1.63
PRE3	YJL001W	FAR1	P21268	830 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	PRP21	P32524	280 aa	Predicted RBP	4.86	□□□□□ -1.63
PRE3	YJL001W	SNC2	P33328	115 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
PRE3	YJL001W	RCN1	P36054	211 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	YBR285W	P38354	144 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	CCS1	P40202	249 aa	Known RBP	4.86	□□□□□ -1.63
PRE3	YJL001W	YIL060W	P40519	144 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	HXT14	P42833	540 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	VPS55	P47111	140 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	ILM1	P47155	203 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	YDR415C	Q04033	374 aa	Predicted RBP	4.86	□□□□□ -1.63
PRE3	YJL001W	HOR7	Q05827	59 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	ASR1	Q06834	288 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	CRC1	Q12289	327 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	ORT1	Q12375	292 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	YPR1	Q12458	312 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	YNL162W-A	Q3E7A8	72 aa		4.86	□□□□□ -1.63
PRE3	YJL001W	VMA6	P32366	345 aa	Known RBP	4.85	□□□□□ -1.63
PRE3	YJL001W	SEC66	P33754	206 aa		4.85	□□□□□ -1.63
PRE3	YJL001W	YKL063C	P35725	167 aa		4.85	□□□□□ -1.63
PRE3	YJL001W	PRS4	P38063	326 aa	Predicted RBP	4.85	□□□□□ -1.63
PRE3	YJL001W	PAU24	P38155	120 aa		4.85	□□□□□ -1.63
PRE3	YJL001W	PAM16	P42949	149 aa		4.85	□□□□□ -1.63
PRE3	YJL001W	YJL118W	P47022	219 aa		4.85	□□□□□ -1.63
PRE3	YJL001W	YLR283W	Q05867	314 aa		4.85	□□□□□ -1.63
PRE3	YJL001W	RPL3	P14126	387 aa	Known RBP	4.84	□□□□□ -1.63
PRE3	YJL001W	MDM10	P18409	493 aa		4.84	□□□□□ -1.63
PRE3	YJL001W	FUN26	P31381	517 aa		4.84	□□□□□ -1.63
PRE3	YJL001W	ERG2	P32352	222 aa		4.84	□□□□□ -1.63
PRE3	YJL001W	ARO4	P32449	370 aa	Known RBP	4.84	□□□□□ -1.63
PRE3	YJL001W	EGD2	P38879	174 aa	Known RBP	4.84	□□□□□ -1.63
PRE3	YJL001W	FMC1	P40491	155 aa		4.84	□□□□□ -1.63
PRE3	YJL001W	YIL024C	P40543	189 aa		4.84	□□□□□ -1.63
PRE3	YJL001W	RPS0B	P46654	252 aa	Known RBP	4.84	□□□□□ -1.63
PRE3	YJL001W	GWT1	P47026	490 aa		4.84	□□□□□ -1.63
PRE3	YJL001W	EFM3	P47163	339 aa		4.84	□□□□□ -1.63
PRE3	YJL001W	VMA10	P48836	114 aa	Known RBP	4.84	□□□□□ -1.63
PRE3	YJL001W	SCW4	P53334	386 aa	Known RBP	4.84	□□□□□ -1.63
PRE3	YJL001W	YML122C	Q03207	126 aa		4.84	□□□□□ -1.63
PRE3	YJL001W	RRP17	Q04031	235 aa	Predicted RBP	4.84	□□□□□ -1.63
PRE3	YJL001W	NOC4	Q06512	552 aa	Predicted RBP	4.84	□□□□□ -1.63
PRE3	YJL001W	MDM36	Q06820	579 aa		4.84	□□□□□ -1.63
PRE3	YJL001W	POS5	Q06892	414 aa		4.84	□□□□□ -1.63
PRE3	YJL001W	YOR192C-C	Q3E736	78 aa		4.84	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 63.1 ms