RNA–Protein interactions for RNA: YHR200W

RPN10, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeast

Gene RPN10, Length 807 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN10	YHR200W	HSK3	P69852	69 aa		11.74	□□□□□ -0.53
RPN10	YHR200W	MRP20	P32387	263 aa		11.73	□□□□□ -0.53
RPN10	YHR200W	PDC2	P32896	925 aa		11.73	□□□□□ -0.53
RPN10	YHR200W	MTR2	P34232	184 aa	Known RBP	11.73	□□□□□ -0.53
RPN10	YHR200W	GLY1	P37303	387 aa	Known RBP	11.73	□□□□□ -0.53
RPN10	YHR200W	GEP4	P38812	185 aa		11.73	□□□□□ -0.53
RPN10	YHR200W	ECM14	P38836	430 aa		11.73	□□□□□ -0.53
RPN10	YHR200W	MRPL22	P53881	309 aa		11.73	□□□□□ -0.53
RPN10	YHR200W	NRG1	Q03125	231 aa		11.73	□□□□□ -0.53
RPN10	YHR200W	RIM9	Q04734	239 aa		11.73	□□□□□ -0.53
RPN10	YHR200W	YTH1	Q06102	208 aa	Predicted RBP	11.73	□□□□□ -0.53
RPN10	YHR200W	YDL086W	Q07505	273 aa		11.73	□□□□□ -0.53
RPN10	YHR200W	ALG6	Q12001	544 aa	Known RBP	11.73	□□□□□ -0.53
RPN10	YHR200W	YLR146W-A	Q2V2P1	62 aa		11.73	□□□□□ -0.53
RPN10	YHR200W	SPS100	P13130	326 aa		11.72	□□□□□ -0.53
RPN10	YHR200W	PNC1	P53184	216 aa	Known RBP	11.72	□□□□□ -0.53
RPN10	YHR200W	DID2	P69771	204 aa		11.72	□□□□□ -0.53
RPN10	YHR200W	ANT1	Q06497	328 aa		11.72	□□□□□ -0.53
RPN10	YHR200W	YOR292C	Q08743	309 aa		11.72	□□□□□ -0.53
RPN10	YHR200W	YGL194C-A	Q2V2P6	80 aa		11.72	□□□□□ -0.53
RPN10	YHR200W	LSB5	P25369	354 aa		11.71	□□□□□ -0.53
RPN10	YHR200W	TIP1	P27654	210 aa	Predicted RBP	11.71	□□□□□ -0.53
RPN10	YHR200W	VMA7	P39111	118 aa		11.71	□□□□□ -0.53
RPN10	YHR200W	PKP2	P53170	491 aa		11.71	□□□□□ -0.53
RPN10	YHR200W	DMA2	P53924	522 aa		11.71	□□□□□ -0.53
RPN10	YHR200W	GPI15	P53961	229 aa		11.71	□□□□□ -0.53
RPN10	YHR200W	VPS28	Q02767	242 aa		11.71	□□□□□ -0.53
RPN10	YHR200W	CAC2	Q04199	468 aa		11.71	□□□□□ -0.53
RPN10	YHR200W	RFM1	Q12192	310 aa		11.71	□□□□□ -0.53
RPN10	YHR200W	YLR108C	Q12259	485 aa		11.71	□□□□□ -0.53
RPN10	YHR200W	ATG31	Q12421	196 aa		11.71	□□□□□ -0.53
RPN10	YHR200W	YBR298C-A	Q8TGK4	73 aa		11.71	□□□□□ -0.53
RPN10	YHR200W	RPL39	P04650	51 aa		11.7	□□□□□ -0.54
RPN10	YHR200W	GDH1	P07262	454 aa	Known RBP	11.7	□□□□□ -0.54
RPN10	YHR200W	CPR5	P35176	225 aa		11.7	□□□□□ -0.54
RPN10	YHR200W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	11.7	□□□□□ -0.54	not detected
RPN10	YHR200W	SRB7	P47822	140 aa		11.7	□□□□□ -0.54
RPN10	YHR200W	GEP7	P53171	287 aa		11.7	□□□□□ -0.54
RPN10	YHR200W	PAM18	Q07914	168 aa		11.7	□□□□□ -0.54
RPN10	YHR200W	SWT1	Q12104	458 aa		11.7	□□□□□ -0.54
RPN10	YHR200W	YOR192C-C	Q3E736	78 aa		11.7	□□□□□ -0.54
RPN10	YHR200W	COQ2	P32378	372 aa		11.69	□□□□□ -0.54
RPN10	YHR200W	PCL7	P40186	285 aa		11.69	□□□□□ -0.54
RPN10	YHR200W	TTI2	P47168	421 aa		11.69	□□□□□ -0.54
RPN10	YHR200W	YFH1	Q07540	174 aa		11.69	□□□□□ -0.54
RPN10	YHR200W	HRD1	Q08109	551 aa		11.69	□□□□□ -0.54
RPN10	YHR200W	FCF2	Q12035	217 aa	Predicted RBP	11.69	□□□□□ -0.54
RPN10	YHR200W	YJR112W-A	Q3E743	109 aa		11.69	□□□□□ -0.54
RPN10	YHR200W	SPO24	Q3E752	67 aa		11.69	□□□□□ -0.54
RPN10	YHR200W	HUG1	Q6Q5K6	68 aa		11.69	□□□□□ -0.54
RPN10	YHR200W	ERG2	P32352	222 aa		11.68	□□□□□ -0.54
RPN10	YHR200W	YHL044W	P38727	235 aa		11.68	□□□□□ -0.54
RPN10	YHR200W	LSM12	P38828	187 aa	Known RBP	11.68	□□□□□ -0.54
RPN10	YHR200W	SBH2	P52871	88 aa		11.68	□□□□□ -0.54
RPN10	YHR200W	TEX1	P53851	422 aa	Known RBP	11.68	□□□□□ -0.54
RPN10	YHR200W	TIM10	P87108	93 aa		11.68	□□□□□ -0.54
RPN10	YHR200W	YDR114C	Q04597	100 aa		11.68	□□□□□ -0.54
RPN10	YHR200W	AEP3	Q12089	606 aa		11.68	□□□□□ -0.54
RPN10	YHR200W	FMP16	Q12497	93 aa		11.68	□□□□□ -0.54
RPN10	YHR200W	SEC22	P22214	214 aa		11.67	□□□□□ -0.54
RPN10	YHR200W	GAR1	P28007	205 aa	Known RBP	11.67	□□□□□ -0.54
RPN10	YHR200W	IKI1	P38874	309 aa		11.67	□□□□□ -0.54
RPN10	YHR200W	SSO2	P39926	295 aa		11.67	□□□□□ -0.54
RPN10	YHR200W	GLR1	P41921	483 aa	Known RBP	11.67	□□□□□ -0.54
RPN10	YHR200W	TAD2	P47058	250 aa		11.67	□□□□□ -0.54
RPN10	YHR200W	RPL21A	Q02753	160 aa	Known RBP	11.67	□□□□□ -0.54
RPN10	YHR200W	ASM4	Q05166	528 aa		11.67	□□□□□ -0.54
RPN10	YHR200W	RRT7	Q07829	113 aa		11.67	□□□□□ -0.54
RPN10	YHR200W	RPL21B	Q12672	160 aa	Known RBP	11.67	□□□□□ -0.54
RPN10	YHR200W	YKL187C	P34231	750 aa		11.66	□□□□□ -0.54
RPN10	YHR200W	SOR1	P35497	357 aa	Known RBP	11.66	□□□□□ -0.54
RPN10	YHR200W	ASP1	P38986	381 aa	Predicted RBP	11.66	□□□□□ -0.54
RPN10	YHR200W	GCV3	P39726	170 aa	Predicted RBP	11.66	□□□□□ -0.54
RPN10	YHR200W	YJR111C	P47148	283 aa	Known RBP	11.66	□□□□□ -0.54
RPN10	YHR200W	YNR064C	P53750	290 aa		11.66	□□□□□ -0.54
RPN10	YHR200W	HED1	Q03937	162 aa		11.66	□□□□□ -0.54
RPN10	YHR200W	ERP1	Q05359	219 aa	Known RBP	11.66	□□□□□ -0.54
RPN10	YHR200W	SOR2	Q07786	357 aa		11.66	□□□□□ -0.54
RPN10	YHR200W	APA2	P22108	325 aa		11.65	□□□□□ -0.54
RPN10	YHR200W	DBP2	P24783	546 aa	Known RBP	11.65	□□□□□ -0.54
RPN10	YHR200W	SMM1	P53720	384 aa	Known RBP	11.65	□□□□□ -0.54
RPN10	YHR200W	LPP1	Q04396	274 aa		11.65	□□□□□ -0.54
RPN10	YHR200W	BER1	Q06688	274 aa	Known RBP	11.65	□□□□□ -0.54
RPN10	YHR200W	YOL118C	Q08259	102 aa		11.65	□□□□□ -0.54
RPN10	YHR200W	YBR085C-A	O43137	85 aa		11.64	□□□□□ -0.55
RPN10	YHR200W	ATP10	P18496	279 aa		11.64	□□□□□ -0.55
RPN10	YHR200W	YHR138C	P38841	114 aa	Predicted RBP	11.64	□□□□□ -0.55
RPN10	YHR200W	PIR5	P46999	287 aa		11.64	□□□□□ -0.55
RPN10	YHR200W	YJR012C	P47087	207 aa		11.64	□□□□□ -0.55
RPN10	YHR200W	YDR415C	Q04033	374 aa	Predicted RBP	11.64	□□□□□ -0.55
RPN10	YHR200W	RPP1A	P05318	106 aa	Predicted RBP	11.63	□□□□□ -0.55
RPN10	YHR200W	SIT1	P39980	628 aa		11.63	□□□□□ -0.55
RPN10	YHR200W	UBC12	P52491	188 aa		11.63	□□□□□ -0.55
RPN10	YHR200W	YIF1	P53845	314 aa	Known RBP	11.63	□□□□□ -0.55
RPN10	YHR200W	ECM31	P38122	312 aa		11.62	□□□□□ -0.55
RPN10	YHR200W	YEA6	P39953	335 aa		11.62	□□□□□ -0.55
RPN10	YHR200W	MSO1	P53604	210 aa	Known RBP	11.62	□□□□□ -0.55
RPN10	YHR200W	TIM44	Q01852	431 aa		11.62	□□□□□ -0.55
RPN10	YHR200W	YMR090W	Q04304	227 aa	Known RBP	11.62	□□□□□ -0.55
RPN10	YHR200W	ORM2	Q06144	216 aa		11.62	□□□□□ -0.55

Retrieved 100 of 5,963 RNA–protein pairs in 31.9 ms