RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP42	YDR235W	CUS2	P53830	285 aa	Predicted RBP	0.18	□□□□□ -2.38
PRP42	YDR235W	POP3	P53833	195 aa	Predicted RBP	0.18	□□□□□ -2.38
PRP42	YDR235W	YNL134C	P53912	376 aa	Known RBP	0.18	□□□□□ -2.38
PRP42	YDR235W	DID2	P69771	204 aa		0.18	□□□□□ -2.38
PRP42	YDR235W	KRE28	Q04431	385 aa		0.18	□□□□□ -2.38
PRP42	YDR235W	LSO2	Q3E772	92 aa	Known RBP	0.18	□□□□□ -2.38
PRP42	YDR235W	TSC3	Q3E790	80 aa		0.18	□□□□□ -2.38
PRP42	YDR235W	TDA8	Q6B2U8	126 aa		0.18	□□□□□ -2.38
PRP42	YDR235W	DRS2	P39524	1355 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	TIM9	O74700	87 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	SIR2	P06700	562 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	BCY1	P07278	416 aa	Known RBP	0.17	□□□□□ -2.38
PRP42	YDR235W	MRPL25	P23369	157 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	CDC10	P25342	322 aa	Known RBP	0.17	□□□□□ -2.38
PRP42	YDR235W	PBN1	P25580	416 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	RPT5	P33297	434 aa	Known RBP	0.17	□□□□□ -2.38
PRP42	YDR235W	YUH1	P35127	236 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	LDB7	P38210	180 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	GVP36	P40531	326 aa	Known RBP	0.17	□□□□□ -2.38
PRP42	YDR235W	NUP84	P52891	726 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	SWP1	Q02795	286 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	AIM36	Q03798	255 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	RRT8	Q08219	342 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	FSF1	Q12029	327 aa	Known RBP	0.17	□□□□□ -2.38
PRP42	YDR235W	ATG31	Q12421	196 aa		0.17	□□□□□ -2.38
PRP42	YDR235W	CYR1	P08678	2026 aa	Known RBP	0.17	□□□□□ -2.38
PRP42	YDR235W	YLR236C	A0A023PZG4	107 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	CDC28	P00546	298 aa	Known RBP	0.16	□□□□□ -2.38
PRP42	YDR235W	YHR212W-A	P0CX91	67 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	URA6	P15700	204 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	NTF2	P33331	125 aa	Known RBP	0.16	□□□□□ -2.38
PRP42	YDR235W	OPY1	P38271	328 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	SIP3	P38717	1229 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	LIA1	P47120	325 aa	Known RBP	0.16	□□□□□ -2.38
PRP42	YDR235W	ARO8	P53090	500 aa	Known RBP	0.16	□□□□□ -2.38
PRP42	YDR235W	PRM8	P53174	237 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	RCE1	Q03530	315 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	YLR173W	Q06247	608 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	GPM2	Q12008	311 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	MED4	Q12343	284 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	RRP36	Q12481	300 aa	Predicted RBP	0.16	□□□□□ -2.38
PRP42	YDR235W	ATG40	Q99325	256 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	SPT3	P06844	337 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	SEC11	P15367	167 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	DBF2	P22204	572 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	YBR285W	P38354	144 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	EDC3	P39998	551 aa	Known RBP	0.16	□□□□□ -2.38
PRP42	YDR235W	FLX1	P40464	311 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	FMC1	P40491	155 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	FAR7	P43592	221 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	FYV6	P53913	173 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	YDR274C	P87283	123 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	SRL4	Q03085	281 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	CUE4	Q04201	117 aa	Predicted RBP	0.16	□□□□□ -2.38
PRP42	YDR235W	YHR007C-A	Q07074	71 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	RAD28	Q12021	506 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	MCP1	Q12106	302 aa		0.16	□□□□□ -2.38
PRP42	YDR235W	MATALPHA1	P0CY06	175 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	HMLALPHA1	P0CY07	175 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	RPO26	P20435	155 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	BET1	P22804	142 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	YCR016W	P25617	290 aa	Known RBP	0.15	□□□□□ -2.39
PRP42	YDR235W	SEC17	P32602	292 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	PTM1	P32857	523 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	SSO1	P32867	290 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.15	□□□□□ -2.39	not detected
PRP42	YDR235W	UTP30	P36144	274 aa	Known RBP	0.15	□□□□□ -2.39
PRP42	YDR235W	VMA22	P38784	181 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	RMD6	P39975	231 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	YFL065C	P43539	102 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	YAE1	P47118	141 aa	Predicted RBP	0.15	□□□□□ -2.39
PRP42	YDR235W	BXI1	P48558	297 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	BRR6	P53062	197 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	ALG13	P53178	202 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	CWC27	Q02770	301 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	CDC123	Q05791	360 aa		0.15	□□□□□ -2.39
PRP42	YDR235W	CFT1	Q06632	1357 aa	Known RBP	0.15	□□□□□ -2.39
PRP42	YDR235W	ACC1	Q00955	2233 aa	Known RBP	0.14	□□□□□ -2.39
PRP42	YDR235W	URA5	P13298	226 aa	Known RBP	0.14	□□□□□ -2.39
PRP42	YDR235W	KSS1	P14681	368 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	STP22	P25604	385 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	0.14	□□□□□ -2.39	not detected
PRP42	YDR235W	MSN4	P33749	630 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	APS1	P35181	156 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	YHL042W	P38729	150 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	TVP23	P38962	199 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	AST2	P39945	430 aa	Known RBP	0.14	□□□□□ -2.39
PRP42	YDR235W	COX15	P40086	486 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	YPL073C	P40323	161 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	RPC17	P47076	161 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	PET117	Q02771	107 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	YLR283W	Q05867	314 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	YPR174C	Q06616	221 aa	Predicted RBP	0.14	□□□□□ -2.39
PRP42	YDR235W	YHR214C-E	Q8TGK0	99 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	YFR032C-B	Q8TGU2	87 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	INO80	P53115	1489 aa		0.14	□□□□□ -2.39
PRP42	YDR235W	THP2	O13539	261 aa	Known RBP	0.13	□□□□□ -2.39
PRP42	YDR235W	MDM35	O60200	86 aa		0.13	□□□□□ -2.39
PRP42	YDR235W	RPL28	P02406	149 aa	Known RBP	0.13	□□□□□ -2.39
PRP42	YDR235W	RHO1	P06780	209 aa	Known RBP	0.13	□□□□□ -2.39

Retrieved 100 of 5,963 RNA–protein pairs in 44.2 ms