RNA–Protein interactions for RNA: ENST00000495688.5

PTPN7-217, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

TSL 1 (best)

Gene PTPN7, Length 2,689 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-217ENST00000495688 ZNF365Q70YC5 407 aa13.84□□□□□ -0.19
PTPN7-217ENST00000495688 FITM2Q8N6M3 262 aa13.84□□□□□ -0.19
PTPN7-217ENST00000495688 CKAP2Q8WWK9 683 aa13.84□□□□□ -0.19
PTPN7-217ENST00000495688 THOC1Q96FV9 657 aaKnown RBP13.84□□□□□ -0.19
PTPN7-217ENST00000495688 ZBTB45Q96K62 511 aaPredicted RBP13.84□□□□□ -0.19
PTPN7-217ENST00000495688 TGS1Q96RS0 853 aaKnown RBP13.84□□□□□ -0.19
PTPN7-217ENST00000495688 OSBPL8Q9BZF1 889 aa13.84□□□□□ -0.19
PTPN7-217ENST00000495688 FHDC1Q9C0D6 1143 aaPredicted RBP13.84□□□□□ -0.19
PTPN7-217ENST00000495688 ECT2Q9H8V3 914 aa13.84□□□□□ -0.19
PTPN7-217ENST00000495688 APOBEC3GQ9HC16 384 aaKnown RBP13.84□□□□□ -0.19
PTPN7-217ENST00000495688 SEPT9Q9UHD8 586 aaPredicted RBP13.84□□□□□ -0.19
PTPN7-217ENST00000495688 MCM8Q9UJA3 840 aa13.84□□□□□ -0.19
PTPN7-217ENST00000495688 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.84□□□□□ -0.19
PTPN7-217ENST00000495688 WNT10BO00744 389 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 WDR46O15213 610 aaKnown RBP13.83□□□□□ -0.2
PTPN7-217ENST00000495688 STBD1O95210 358 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 CYP1A1P04798 512 aaPredicted RBP13.83□□□□□ -0.2
PTPN7-217ENST00000495688 SFNP31947 248 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 GTF2H1P32780 548 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 GHRHRQ02643 423 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 CENPCQ03188 943 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 MGAT5Q09328 741 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 NLRX1Q86UT6 975 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 GRK7Q8WTQ7 553 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 SPIRE2Q8WWL2 714 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 ACSF2Q96CM8 615 aaPredicted RBP13.83□□□□□ -0.2
PTPN7-217ENST00000495688 HAPLN2Q9GZV7 340 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 CXorf56Q9H5V9 222 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 GSTTP1A0A1W2PQM5 241 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 A8MUI8 341 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 VNN1O95497 513 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 ETS1P14921 441 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 STX2P32856 288 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 PIK3CAP42336 1068 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 SLC1A1P43005 524 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 RPL7AP62424 266 aaKnown RBP13.83□□□□□ -0.2
PTPN7-217ENST00000495688 MAMLD1Q13495 774 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 MTMR2Q13614 643 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 P3H1Q32P28 736 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 SEZ6Q53EL9 994 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 CAPN12Q6ZSI9 719 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 FAM47EQ6ZV65 393 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 GSTA5Q7RTV2 222 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 SPATA21Q7Z572 469 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 CCDC60Q8IWA6 550 aaPredicted RBP13.83□□□□□ -0.2
PTPN7-217ENST00000495688 SAMD3Q8N6K7 520 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 SLC17A8Q8NDX2 589 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 SUPT20HQ8NEM7 779 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 FLAD1Q8NFF5 587 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 PRCCQ92733 491 aaPredicted RBP13.83□□□□□ -0.2
PTPN7-217ENST00000495688 ADAM22Q9P0K1 906 aa13.83□□□□□ -0.2
PTPN7-217ENST00000495688 KIAA1217Q5T5P2 1943 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 IGF2BP3O00425 579 aaKnown RBP eCLIP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 PLSCR1O15162 318 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 SPAG7O75391 227 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 RGS20O76081 388 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 SUN1O94901 812 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 EGFRP00533 1210 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 ACO1P21399 889 aaKnown RBP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 FOXN2P32314 431 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 NOMO3P69849 1222 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 NEDD9Q14511 834 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 FASTKD3Q14CZ7 662 aaKnown RBP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 TMED2Q15363 201 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 ZACNQ401N2 412 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 GALNTL6Q49A17 601 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 BRDTQ58F21 947 aaPredicted RBP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 USP37Q86T82 979 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 FNBP1Q96RU3 617 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 RBM15Q96T37 977 aaKnown RBP eCLIP13.82□□□□□ -0.21e-6■■■■□ 23.6
PTPN7-217ENST00000495688 PAIP2Q9BPZ3 127 aaKnown RBP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 KIF9Q9HAQ2 790 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 ZNF541Q9H0D2 1346 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 C4BPAP04003 597 aaKnown RBP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 NR3C2P08235 984 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 RPSAP08865 295 aaKnown RBP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 LIG4P49917 911 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 ALDH5A1P51649 535 aaPredicted RBP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 CCNG2Q16589 344 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 ZFYVE27Q5T4F4 411 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 MIS18BP1Q6P0N0 1132 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 SYDE1Q6ZW31 735 aaPredicted RBP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 ENOSF1Q7L5Y1 443 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 SPOCK2Q92563 424 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 ATG4CQ96DT6 458 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 MRRFQ96E11 262 aaKnown RBP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 FAM212AQ96EL1 285 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 STAMBPL1Q96FJ0 436 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 POLR3FQ9H1D9 316 aaPredicted RBP13.82□□□□□ -0.2
PTPN7-217ENST00000495688 DNPEPQ9ULA0 475 aa13.82□□□□□ -0.2
PTPN7-217ENST00000495688 RASA4BC9J798 803 aa13.81□□□□□ -0.2
PTPN7-217ENST00000495688 TLR3O15455 904 aaKnown RBP13.81□□□□□ -0.2
PTPN7-217ENST00000495688 RASA4O43374 803 aa13.81□□□□□ -0.2
PTPN7-217ENST00000495688 CDH16O75309 829 aa13.81□□□□□ -0.2
PTPN7-217ENST00000495688 KRT16P08779 473 aa13.81□□□□□ -0.2
PTPN7-217ENST00000495688 KLRC2P26717 231 aa13.81□□□□□ -0.2
PTPN7-217ENST00000495688 ATP5DP30049 168 aa13.81□□□□□ -0.2
PTPN7-217ENST00000495688 GNA15P30679 374 aa13.81□□□□□ -0.2
PTPN7-217ENST00000495688 MAN1A1P33908 653 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 150.5 ms