RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PCDHB2Q9Y5E7 798 aa14.78□□□□□ -0.04
PTPRF-202ENST00000372405 GRIN2DO15399 1336 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 RTN2O75298 545 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 ASGR1P07306 291 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 CFHP08603 1231 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 ASPAP45381 313 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 NOP2P46087 812 aaKnown RBP14.77□□□□□ -0.04
PTPRF-202ENST00000372405 GUCY2FP51841 1108 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 CRYBB1P53674 252 aaPredicted RBP14.77□□□□□ -0.04
PTPRF-202ENST00000372405 TRPC3Q13507 836 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 PCBP1Q15365 356 aaKnown RBP eCLIP14.77□□□□□ -0.04
PTPRF-202ENST00000372405 KCNA10Q16322 511 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 ZNF699Q32M78 642 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 DCAF4L1Q3SXM0 396 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 NOTUMQ6P988 496 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 RBBP8NLQ8NC74 664 aaPredicted RBP14.77□□□□□ -0.04
PTPRF-202ENST00000372405 ZNF784Q8NCA9 323 aaPredicted RBP14.77□□□□□ -0.04
PTPRF-202ENST00000372405 CTNNBL1Q8WYA6 563 aaPredicted RBP14.77□□□□□ -0.04
PTPRF-202ENST00000372405 CAPZA3Q96KX2 299 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 OSBPL9Q96SU4 736 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 MMS19Q96T76 1030 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 PSMB7Q99436 277 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 SPC25Q9HBM1 224 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 SNTG2Q9NY99 539 aa14.77□□□□□ -0.04
PTPRF-202ENST00000372405 CLSTN1O94985 981 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 ITGB3P05106 788 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 PRLRP16471 622 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 CXCR5P32302 372 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 TAF2Q6P1X5 1199 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 SLFN11Q7Z7L1 901 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 CREG2Q8IUH2 290 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 NME8Q8N427 588 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 CEP112Q8N8E3 955 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 EPC1Q9H2F5 836 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 NXF3Q9H4D5 531 aaKnown RBP14.76□□□□□ -0.05
PTPRF-202ENST00000372405 POLIQ9UNA4 740 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 SCN1AP35498 2009 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 HMGCRP04035 888 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 KRT19P08727 400 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 UNGP13051 313 aaPredicted RBP14.76□□□□□ -0.05
PTPRF-202ENST00000372405 MAP2K2P36507 400 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 TMEM132DQ14C87 1099 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 CLEC16AQ2KHT3 1053 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 UBXN11Q5T124 520 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 ZMAT2Q96NC0 199 aaKnown RBP14.76□□□□□ -0.05
PTPRF-202ENST00000372405 CISHQ9NSE2 258 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 CHORDC1Q9UHD1 332 aaPredicted RBP14.76□□□□□ -0.05
PTPRF-202ENST00000372405 C2CD2Q9Y426 696 aa14.76□□□□□ -0.05
PTPRF-202ENST00000372405 ATMINO43313 823 aaPredicted RBP14.75□□□□□ -0.05
PTPRF-202ENST00000372405 WEE2P0C1S8 567 aa14.75□□□□□ -0.05
PTPRF-202ENST00000372405 ZSCAN20P17040 1043 aaPredicted RBP14.75□□□□□ -0.05
PTPRF-202ENST00000372405 CD58P19256 250 aa14.75□□□□□ -0.05
PTPRF-202ENST00000372405 CST5P28325 142 aaPredicted RBP14.75□□□□□ -0.05
PTPRF-202ENST00000372405 PTPROQ16827 1216 aa14.75□□□□□ -0.05
PTPRF-202ENST00000372405 SCARA5Q6ZMJ2 495 aa14.75□□□□□ -0.05
PTPRF-202ENST00000372405 ZNF677Q86XU0 584 aa14.75□□□□□ -0.05
PTPRF-202ENST00000372405 UBXN4Q92575 508 aa14.75□□□□□ -0.05
PTPRF-202ENST00000372405 SNX27Q96L92 541 aa14.75□□□□□ -0.05
PTPRF-202ENST00000372405 ZSWIM1Q9BR11 485 aa14.75□□□□□ -0.05
PTPRF-202ENST00000372405 CCDC94Q9BW85 323 aaPredicted RBP14.75□□□□□ -0.05
PTPRF-202ENST00000372405 CELF4Q9BZC1 486 aaKnown RBP14.75□□□□□ -0.05
PTPRF-202ENST00000372405 PIN4Q9Y237 131 aaKnown RBP14.75□□□□□ -0.05
PTPRF-202ENST00000372405 HYOU1Q9Y4L1 999 aa14.75□□□□□ -0.05
PTPRF-202ENST00000372405 BUB1BO60566 1050 aaPredicted RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 MYCNP04198 464 aaPredicted RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 AXLP30530 894 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 GNA15P30679 374 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 SSTR3P32745 418 aaPredicted RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 BPIFB4P59827 614 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 GPC5P78333 572 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 MRPS6P82932 125 aaKnown RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 RBM10P98175 930 aaKnown RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 TCEAL1Q15170 157 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 TEX35Q5T0J7 233 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 ACAD10Q6JQN1 1059 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 ALKAL1Q6UXT8 129 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 SERINC5Q86VE9 423 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 FAM228AQ86W67 206 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 NOA1Q8NC60 698 aaKnown RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 TAF4BQ92750 862 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 BCO2Q9BYV7 579 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 SDCBP2Q9H190 292 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 ABCB6Q9NP58 842 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 EHD2Q9NZN4 543 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 NXF1Q9UBU9 619 aaKnown RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 STXBP5LQ9Y2K9 1186 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 NOC2LQ9Y3T9 749 aaKnown RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 FRMPD3Q5JV73 1810 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 CYP1A1P04798 512 aaPredicted RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 TCP1P17987 556 aaKnown RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 POLR2BP30876 1174 aaKnown RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 RAP1GAPP47736 663 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 IFI16Q16666 785 aaKnown RBP14.74□□□□□ -0.05
PTPRF-202ENST00000372405 WDR72Q3MJ13 1102 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 FAM47CQ5HY64 1035 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 SESTD1Q86VW0 696 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 GOLGA1Q92805 767 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 KIF12Q96FN5 646 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 RNF39Q9H2S5 420 aa14.74□□□□□ -0.05
PTPRF-202ENST00000372405 VRTNQ9H8Y1 702 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms