RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 AGPAT1Q99943 283 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 C2orf40Q9H1Z8 148 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 PXDNQ92626 1479 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 NPHP3-ACAD11A0A0J9YXS1 232 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 AP5Z1O43299 807 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 SKAP2O75563 359 aaPredicted RBP12.1□□□□□ -0.47
VPS39-201ENST00000318006 PRLRP16471 622 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 SLC1A1P43005 524 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 HMGCS2P54868 508 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 STX3Q13277 289 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 PAPD7Q5XG87 772 aaKnown RBP12.1□□□□□ -0.47
VPS39-201ENST00000318006 RHPN2Q8IUC4 686 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 TMCO5AQ8N6Q1 288 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 OR9Q1Q8NGQ5 310 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 SLC35G2Q8TBE7 412 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 SKA2Q8WVK7 121 aaPredicted RBP12.1□□□□□ -0.47
VPS39-201ENST00000318006 FAM151AQ8WW52 585 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 ANKS1AQ92625 1134 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 INPP5FQ9Y2H2 1132 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 TMCC1O94876 653 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 LRRC8BQ6P9F7 803 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 OR6B3Q8NGW1 331 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 SERPINB12Q96P63 405 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 OSBPL8Q9BZF1 889 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 PABPC3Q9H361 631 aaKnown RBP12.1□□□□□ -0.47
VPS39-201ENST00000318006 ASNSD1Q9NWL6 643 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 ZNF70Q9UC06 446 aaPredicted RBP12.1□□□□□ -0.47
VPS39-201ENST00000318006 PAMP19021 973 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 SERPINB1P30740 379 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 HSPA13P48723 471 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 GRIN1Q05586 938 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 TTLL4Q14679 1199 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 ADRM1Q16186 407 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 PPP6R3Q5H9R7 873 aaPredicted RBP12.1□□□□□ -0.47
VPS39-201ENST00000318006 ENOSF1Q7L5Y1 443 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 CDR2LQ86X02 465 aaPredicted RBP12.1□□□□□ -0.47
VPS39-201ENST00000318006 CATSPER3Q86XQ3 398 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 TOPORSQ9NS56 1045 aaPredicted RBP12.1□□□□□ -0.47
VPS39-201ENST00000318006 SLC9A2Q9UBY0 812 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 AURKCQ9UQB9 309 aa12.1□□□□□ -0.47
VPS39-201ENST00000318006 PIK3R2O00459 728 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 SLC16A3O15427 465 aaKnown RBP12.09□□□□□ -0.47
VPS39-201ENST00000318006 RTN2O75298 545 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 ATP6V1B1P15313 513 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 YWHABP31946 246 aaKnown RBP12.09□□□□□ -0.47
VPS39-201ENST00000318006 MTMR2Q13614 643 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 CDO1Q16878 200 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 C16orf89Q6UX73 402 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 ARHGAP22Q7Z5H3 698 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 PASD1Q8IV76 773 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 B4GALNT2Q8NHY0 566 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 LZICQ8WZA0 190 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 EXT2Q93063 718 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 FAM129AQ9BZQ8 928 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 RSPH10B2B2RC85 870 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 RSPH10BP0C881 870 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 CASP7P55210 303 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 PTPAQ15257 358 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 ANKMY2Q8IV38 441 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 REEP2Q9BRK0 252 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 CELF4Q9BZC1 486 aaKnown RBP12.09□□□□□ -0.47
VPS39-201ENST00000318006 ADNPQ9H2P0 1102 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 BLOC1S6Q9UL45 172 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 HEY1Q9Y5J3 304 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 IFT172Q9UG01 1749 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 ARHGAP23Q9P227 1491 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 XPO1O14980 1071 aaKnown RBP12.09□□□□□ -0.47
VPS39-201ENST00000318006 ZCCHC18P0CG32 403 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 CCDC15Q0P6D6 951 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 COG2Q14746 738 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 TRIM16LQ309B1 348 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 GPD1LQ8N335 351 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 GALNT4Q8N4A0 578 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 OTUD5Q96G74 571 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 MAML3Q96JK9 1138 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 TIPINQ9BVW5 301 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 MAD2L2Q9UI95 211 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 C15orf41Q9Y2V0 281 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 STRNO43815 780 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 FSBPO95073 299 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 GPC3P51654 580 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 ERVK-24P63145 666 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 ROR1Q01973 937 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 BTNL9Q6UXG8 535 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 CAVIN3Q969G5 261 aa12.09□□□□□ -0.47
VPS39-201ENST00000318006 MRPL4Q9BYD3 311 aaKnown RBP12.09□□□□□ -0.47
VPS39-201ENST00000318006 JPH1Q9HDC5 661 aaPredicted RBP12.09□□□□□ -0.47
VPS39-201ENST00000318006 SASH3O75995 380 aa12.08□□□□□ -0.47
VPS39-201ENST00000318006 FXR2P51116 673 aaKnown RBP eCLIP12.08□□□□□ -0.47
VPS39-201ENST00000318006 MST1RQ04912 1400 aa12.08□□□□□ -0.47
VPS39-201ENST00000318006 DNAJC3Q13217 504 aa12.08□□□□□ -0.47
VPS39-201ENST00000318006 P3H1Q32P28 736 aa12.08□□□□□ -0.47
VPS39-201ENST00000318006 LVRNQ6Q4G3 990 aa12.08□□□□□ -0.47
VPS39-201ENST00000318006 TRIM72Q6ZMU5 477 aa12.08□□□□□ -0.47
VPS39-201ENST00000318006 MFN1Q8IWA4 741 aa12.08□□□□□ -0.47
VPS39-201ENST00000318006 DAGLBQ8NCG7 672 aa12.08□□□□□ -0.47
VPS39-201ENST00000318006 UVRAGQ9P2Y5 699 aa12.08□□□□□ -0.47
VPS39-201ENST00000318006 SERPINI2O75830 405 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 ZNF18P17022 549 aa12.08□□□□□ -0.48
VPS39-201ENST00000318006 NFX1Q12986 1120 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms