RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C GAS3Q03655 524 aa0.06□□□□□ -2.4
NIP1YMR309C ADH6Q04894 360 aaKnown RBP0.06□□□□□ -2.4
NIP1YMR309C COQ10Q08058 207 aa0.06□□□□□ -2.4
NIP1YMR309C NIP7Q08962 181 aaKnown RBP0.06□□□□□ -2.4
NIP1YMR309C YHR139C-AO13536 103 aa0.05□□□□□ -2.4
NIP1YMR309C TPM1P17536 199 aaKnown RBP0.05□□□□□ -2.4
NIP1YMR309C RNA15P25299 296 aaPredicted RBP0.05□□□□□ -2.4
NIP1YMR309C PBN1P25580 416 aa0.05□□□□□ -2.4
NIP1YMR309C TFC1P32367 649 aa0.05□□□□□ -2.4
NIP1YMR309C YET1P35723 206 aa0.05□□□□□ -2.4
NIP1YMR309C GOS1P38736 223 aa0.05□□□□□ -2.4
NIP1YMR309C RPF1P38805 295 aaKnown RBP0.05□□□□□ -2.4
NIP1YMR309C GAA1P39012 614 aa0.05□□□□□ -2.4
NIP1YMR309C BOL2P53082 120 aa0.05□□□□□ -2.4
NIP1YMR309C SNZ1Q03148 297 aa0.05□□□□□ -2.4
NIP1YMR309C YML096WQ04489 525 aa0.05□□□□□ -2.4
NIP1YMR309C RSR1P13856 272 aa0.05□□□□□ -2.4
NIP1YMR309C KRR1P25586 316 aaPredicted RBP0.05□□□□□ -2.4
NIP1YMR309C STP22P25604 385 aa0.05□□□□□ -2.4
NIP1YMR309C DAL80P26343 269 aa0.05□□□□□ -2.4
NIP1YMR309C MEI4P29467 408 aa0.05□□□□□ -2.4
NIP1YMR309C RIB1P38066 345 aa0.05□□□□□ -2.4
NIP1YMR309C ECM33P38248 429 aaKnown RBP0.05□□□□□ -2.4
NIP1YMR309C BFR1P38934 470 aaKnown RBP RIP-Chip data0.05□□□□□ -2.4 RIP-Chip
NIP1YMR309C THO1P40040 218 aaKnown RBP0.05□□□□□ -2.4
NIP1YMR309C EAF6P47128 113 aa0.05□□□□□ -2.4
NIP1YMR309C RCE1Q03530 315 aa0.05□□□□□ -2.4
NIP1YMR309C SPG3Q04398 127 aaPredicted RBP0.05□□□□□ -2.4
NIP1YMR309C MSA1Q08471 629 aa0.05□□□□□ -2.4
NIP1YMR309C BTS1Q12051 335 aa0.05□□□□□ -2.4
NIP1YMR309C YIL177CP40434 1758 aa0.05□□□□□ -2.4
NIP1YMR309C YJL225CP40889 1758 aa0.05□□□□□ -2.4
NIP1YMR309C DRS2P39524 1355 aa0.04□□□□□ -2.4
NIP1YMR309C YHR212W-AP0CX91 67 aa0.04□□□□□ -2.4
NIP1YMR309C ATG22P25568 528 aa0.04□□□□□ -2.4
NIP1YMR309C SRY1P36007 326 aa0.04□□□□□ -2.4
NIP1YMR309C MRPL37P36532 105 aa0.04□□□□□ -2.4
NIP1YMR309C YBR209WP38311 105 aa0.04□□□□□ -2.4
NIP1YMR309C SMB1P40018 196 aaKnown RBP0.04□□□□□ -2.4
NIP1YMR309C YRB2P40517 327 aa0.04□□□□□ -2.4
NIP1YMR309C YNL046WP53956 172 aa0.04□□□□□ -2.4
NIP1YMR309C ABF2Q02486 183 aa0.04□□□□□ -2.4
NIP1YMR309C YDR248CQ03786 193 aa0.04□□□□□ -2.4
NIP1YMR309C COX20Q04935 205 aa0.04□□□□□ -2.4
NIP1YMR309C EHD3P28817 500 aa0.04□□□□□ -2.4
NIP1YMR309C HOM6P31116 359 aaKnown RBP0.04□□□□□ -2.4
NIP1YMR309C BIG1P38813 335 aa0.04□□□□□ -2.4
NIP1YMR309C EDC3P39998 551 aaKnown RBP0.04□□□□□ -2.4
NIP1YMR309C PRE6P40303 254 aaKnown RBP0.04□□□□□ -2.4
NIP1YMR309C RSM25P40496 264 aa0.04□□□□□ -2.4
NIP1YMR309C YNR077CP53758 84 aa0.04□□□□□ -2.4
NIP1YMR309C YML108WQ03759 105 aa0.04□□□□□ -2.4
NIP1YMR309C YHR007C-AQ07074 71 aa0.04□□□□□ -2.4
NIP1YMR309C YOR029WQ12243 111 aa0.04□□□□□ -2.4
NIP1YMR309C PDR18P53756 1333 aa0.04□□□□□ -2.4
NIP1YMR309C SNC2P33328 115 aa0.03□□□□□ -2.4
NIP1YMR309C SKG1P36169 355 aa0.03□□□□□ -2.4
NIP1YMR309C YBR096WP38256 230 aa0.03□□□□□ -2.4
NIP1YMR309C SIP3P38717 1229 aa0.03□□□□□ -2.4
NIP1YMR309C RPA43P46669 326 aa0.03□□□□□ -2.4
NIP1YMR309C ARO8P53090 500 aaKnown RBP0.03□□□□□ -2.4
NIP1YMR309C CUS2P53830 285 aaPredicted RBP0.03□□□□□ -2.4
NIP1YMR309C TRM12Q04235 462 aa0.03□□□□□ -2.4
NIP1YMR309C YLR126CQ12288 251 aa0.03□□□□□ -2.4
NIP1YMR309C COX2P00410 251 aa0.03□□□□□ -2.41
NIP1YMR309C CDC36P06100 191 aaPredicted RBP0.03□□□□□ -2.41
NIP1YMR309C SIR2P06700 562 aa0.03□□□□□ -2.41
NIP1YMR309C AQY2P0CD90 149 aa0.03□□□□□ -2.41
NIP1YMR309C MRPL28P36527 147 aa0.03□□□□□ -2.41
NIP1YMR309C UMP1P38293 148 aa0.03□□□□□ -2.41
NIP1YMR309C KNH1P50112 268 aa0.03□□□□□ -2.41
NIP1YMR309C DOC1P53068 250 aa0.03□□□□□ -2.41
NIP1YMR309C NOP13P53883 403 aaKnown RBP RIP-Chip data0.03□□□□□ -2.41not detected
NIP1YMR309C SEI1Q06058 285 aa0.03□□□□□ -2.41
NIP1YMR309C PSF1Q12488 208 aa0.03□□□□□ -2.41
NIP1YMR309C YLR156WP0CE96 114 aa0.02□□□□□ -2.41
NIP1YMR309C YLR159WP0CE97 114 aa0.02□□□□□ -2.41
NIP1YMR309C YLR161WP0CE98 114 aa0.02□□□□□ -2.41
NIP1YMR309C ERD2P18414 219 aa0.02□□□□□ -2.41
NIP1YMR309C DBF2P22204 572 aa0.02□□□□□ -2.41
NIP1YMR309C RPS5P26783 225 aaKnown RBP0.02□□□□□ -2.41
NIP1YMR309C OPY1P38271 328 aa0.02□□□□□ -2.41
NIP1YMR309C POP4P38336 279 aa0.02□□□□□ -2.41
NIP1YMR309C DOG2P38773 246 aa0.02□□□□□ -2.41
NIP1YMR309C NSA1P53136 463 aaPredicted RBP0.02□□□□□ -2.41
NIP1YMR309C POP3P53833 195 aaPredicted RBP0.02□□□□□ -2.41
NIP1YMR309C YNL010WP53981 241 aaKnown RBP0.02□□□□□ -2.41
NIP1YMR309C CUE4Q04201 117 aaPredicted RBP0.02□□□□□ -2.41
NIP1YMR309C YOL107WQ12239 342 aa0.02□□□□□ -2.41
NIP1YMR309C LSO2Q3E772 92 aaKnown RBP0.02□□□□□ -2.41
NIP1YMR309C TSC3Q3E790 80 aa0.02□□□□□ -2.41
NIP1YMR309C DBP3P20447 523 aaKnown RBP0.02□□□□□ -2.41
NIP1YMR309C ECM4P36156 370 aa0.02□□□□□ -2.41
NIP1YMR309C URA8P38627 578 aaPredicted RBP0.02□□□□□ -2.41
NIP1YMR309C RTT105P40063 208 aa0.02□□□□□ -2.41
NIP1YMR309C GLG2P47011 380 aa0.02□□□□□ -2.41
NIP1YMR309C MRPL50P53724 139 aa0.02□□□□□ -2.41
NIP1YMR309C LPP1Q04396 274 aa0.02□□□□□ -2.41
NIP1YMR309C RAD28Q12021 506 aa0.02□□□□□ -2.41
NIP1YMR309C ATG40Q99325 256 aa0.02□□□□□ -2.41
Retrieved 100 of 5,963 RNA–protein pairs in 29.8 ms