RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSH4YKL124W AIM6Q07716 390 aa3.83□□□□□ -1.8
SSH4YKL124W RRI1Q12468 440 aa3.83□□□□□ -1.8
SSH4YKL124W HTZ1Q12692 134 aaKnown RBP3.83□□□□□ -1.8
SSH4YKL124W RPP1AP05318 106 aaPredicted RBP3.82□□□□□ -1.8
SSH4YKL124W GDH1P07262 454 aaKnown RBP3.82□□□□□ -1.8
SSH4YKL124W RPS23AP0CX29 145 aaKnown RBP3.82□□□□□ -1.8
SSH4YKL124W RPS23BP0CX30 145 aa3.82□□□□□ -1.8
SSH4YKL124W ERG4P25340 473 aa3.82□□□□□ -1.8
SSH4YKL124W DEG1P31115 442 aaKnown RBP3.82□□□□□ -1.8
SSH4YKL124W FUN26P31381 517 aa3.82□□□□□ -1.8
SSH4YKL124W CLB6P32943 380 aa3.82□□□□□ -1.8
SSH4YKL124W LYS20P48570 428 aaKnown RBP3.82□□□□□ -1.8
SSH4YKL124W SBH2P52871 88 aa3.82□□□□□ -1.8
SSH4YKL124W OCA2P53949 197 aa3.82□□□□□ -1.8
SSH4YKL124W ARG5,6Q01217 863 aa3.82□□□□□ -1.8
SSH4YKL124W SMP3Q04174 516 aa3.82□□□□□ -1.8
SSH4YKL124W IPK1Q06667 281 aa3.82□□□□□ -1.8
SSH4YKL124W TMC1Q08422 150 aaPredicted RBP3.82□□□□□ -1.8
SSH4YKL124W FIT3Q08907 204 aa3.82□□□□□ -1.8
SSH4YKL124W SRL2Q12020 392 aa3.82□□□□□ -1.8
SSH4YKL124W TPT1Q12272 230 aaKnown RBP3.82□□□□□ -1.8
SSH4YKL124W RTR2Q12378 196 aa3.82□□□□□ -1.8
SSH4YKL124W YCL001W-BQ96VH2 84 aa3.82□□□□□ -1.8
SSH4YKL124W OPI3P05375 206 aa3.81□□□□□ -1.8
SSH4YKL124W PUT1P09368 476 aa3.81□□□□□ -1.8
SSH4YKL124W YBR121C-AP0C5L4 52 aa3.81□□□□□ -1.8
SSH4YKL124W NHP6AP11632 93 aaKnown RBP3.81□□□□□ -1.8
SSH4YKL124W ATP10P18496 279 aa3.81□□□□□ -1.8
SSH4YKL124W YMR31P19955 123 aa3.81□□□□□ -1.8
SSH4YKL124W NDC1P32500 655 aa3.81□□□□□ -1.8
SSH4YKL124W ECM25P32525 599 aa3.81□□□□□ -1.8
SSH4YKL124W YBL010CP32788 280 aa3.81□□□□□ -1.8
SSH4YKL124W ANR2P36090 516 aaPredicted RBP3.81□□□□□ -1.8
SSH4YKL124W APL3P38065 1025 aa3.81□□□□□ -1.8
SSH4YKL124W LSM4P40070 187 aaKnown RBP3.81□□□□□ -1.8
SSH4YKL124W RIO2P40160 425 aaKnown RBP3.81□□□□□ -1.8
SSH4YKL124W YIL012WP40551 113 aa3.81□□□□□ -1.8
SSH4YKL124W PFS2P42841 465 aaKnown RBP3.81□□□□□ -1.8
SSH4YKL124W PMT6P42934 759 aa3.81□□□□□ -1.8
SSH4YKL124W MTL1P53214 551 aa3.81□□□□□ -1.8
SSH4YKL124W TEX1P53851 422 aaKnown RBP3.81□□□□□ -1.8
SSH4YKL124W PGA1P53896 198 aa3.81□□□□□ -1.8
SSH4YKL124W CRZ1P53968 678 aa3.81□□□□□ -1.8
SSH4YKL124W NUP49Q02199 472 aa3.81□□□□□ -1.8
SSH4YKL124W AIM36Q03798 255 aa3.81□□□□□ -1.8
SSH4YKL124W TY1A-DR2Q03964 440 aaKnown RBP3.81□□□□□ -1.8
SSH4YKL124W PEX10Q05568 337 aa3.81□□□□□ -1.8
SSH4YKL124W TAZ1Q06510 381 aa3.81□□□□□ -1.8
SSH4YKL124W SYC1Q08553 188 aaPredicted RBP3.81□□□□□ -1.8
SSH4YKL124W MCT1Q12283 360 aa3.81□□□□□ -1.8
SSH4YKL124W YPL119C-AQ3E751 87 aa3.81□□□□□ -1.8
SSH4YKL124W SAM35P14693 329 aa3.81□□□□□ -1.8
SSH4YKL124W OAC1P32332 324 aa3.81□□□□□ -1.8
SSH4YKL124W UPS2P35200 230 aa3.81□□□□□ -1.8
SSH4YKL124W FLO10P36170 1169 aa3.81□□□□□ -1.8
SSH4YKL124W YBR063CP38083 404 aa3.81□□□□□ -1.8
SSH4YKL124W YHL044WP38727 235 aa3.81□□□□□ -1.8
SSH4YKL124W PHO90P39535 881 aa3.81□□□□□ -1.8
SSH4YKL124W BUR6P40096 142 aa3.81□□□□□ -1.8
SSH4YKL124W SDP1P40479 209 aa3.81□□□□□ -1.8
SSH4YKL124W SYG1P40528 902 aa3.81□□□□□ -1.8
SSH4YKL124W ILM1P47155 203 aa3.81□□□□□ -1.8
SSH4YKL124W NIF3P53081 288 aa3.81□□□□□ -1.8
SSH4YKL124W CWC25P53854 179 aaKnown RBP3.81□□□□□ -1.8
SSH4YKL124W SED1Q01589 338 aa3.81□□□□□ -1.8
SSH4YKL124W SNO1Q03144 224 aa3.81□□□□□ -1.8
SSH4YKL124W FIN1Q03898 291 aa3.81□□□□□ -1.8
SSH4YKL124W NEJ1Q06148 342 aa3.81□□□□□ -1.8
SSH4YKL124W GEP5Q12393 293 aa3.81□□□□□ -1.8
SSH4YKL124W ERG27Q12452 347 aaKnown RBP3.81□□□□□ -1.8
SSH4YKL124W YLR361C-AQ3E795 98 aa3.81□□□□□ -1.8
SSH4YKL124W RPL18AP0CX49 186 aaKnown RBP3.8□□□□□ -1.8
SSH4YKL124W RPL18BP0CX50 186 aaKnown RBP3.8□□□□□ -1.8
SSH4YKL124W FUN19P28003 413 aaPredicted RBP3.8□□□□□ -1.8
SSH4YKL124W GSP1P32835 219 aaKnown RBP3.8□□□□□ -1.8
SSH4YKL124W GSP2P32836 220 aaKnown RBP3.8□□□□□ -1.8
SSH4YKL124W YHR122WP38829 231 aa3.8□□□□□ -1.8
SSH4YKL124W FCY21P40039 528 aa3.8□□□□□ -1.8
SSH4YKL124W YFL054CP43549 646 aa3.8□□□□□ -1.8
SSH4YKL124W SWP82P43554 623 aa3.8□□□□□ -1.8
SSH4YKL124W UBC13P52490 153 aa3.8□□□□□ -1.8
SSH4YKL124W YNL046WP53956 172 aa3.8□□□□□ -1.8
SSH4YKL124W RSM23Q01163 450 aa3.8□□□□□ -1.8
SSH4YKL124W DYN2Q02647 92 aa3.8□□□□□ -1.8
SSH4YKL124W YMR279CQ03263 540 aa3.8□□□□□ -1.8
SSH4YKL124W DIG2Q03373 323 aaKnown RBP3.8□□□□□ -1.8
SSH4YKL124W YTH1Q06102 208 aaPredicted RBP3.8□□□□□ -1.8
SSH4YKL124W YPR196WQ06595 470 aa3.8□□□□□ -1.8
SSH4YKL124W MCM21Q06675 368 aa3.8□□□□□ -1.8
SSH4YKL124W YDL086WQ07505 273 aa3.8□□□□□ -1.8
SSH4YKL124W GAT3Q07928 141 aa3.8□□□□□ -1.8
SSH4YKL124W YPL199CQ08954 240 aa3.8□□□□□ -1.8
SSH4YKL124W ATP16Q12165 160 aa3.8□□□□□ -1.8
SSH4YKL124W PCL9Q12477 304 aa3.8□□□□□ -1.8
SSH4YKL124W FSH3Q99369 266 aa3.8□□□□□ -1.8
SSH4YKL124W BPH1P25356 2167 aa3.8□□□□□ -1.8
SSH4YKL124W RPL15AP05748 204 aaKnown RBP3.79□□□□□ -1.8
SSH4YKL124W PET54P10834 293 aa3.79□□□□□ -1.8
SSH4YKL124W NAM2P11325 894 aa3.79□□□□□ -1.8
SSH4YKL124W URA6P15700 204 aa3.79□□□□□ -1.8
Retrieved 100 of 5,963 RNA–protein pairs in 38.8 ms