RNA–Protein interactions for RNA: YJL001W

PRE3, Transcript of Beta 1 subunit of the 20S proteasome, yeast

Gene PRE3, Length 648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE3	YJL001W	YPL225W	Q08971	146 aa	Known RBP	5	□□□□□ -1.61
PRE3	YJL001W	TPK3	P05986	398 aa		4.99	□□□□□ -1.61
PRE3	YJL001W	CHO1	P08456	276 aa		4.99	□□□□□ -1.61
PRE3	YJL001W	RPS8A	P0CX39	200 aa	Known RBP	4.99	□□□□□ -1.61
PRE3	YJL001W	RPS8B	P0CX40	200 aa	Known RBP	4.99	□□□□□ -1.61
PRE3	YJL001W	MIG1	P27705	504 aa		4.99	□□□□□ -1.61
PRE3	YJL001W	OAC1	P32332	324 aa		4.99	□□□□□ -1.61
PRE3	YJL001W	ERG3	P32353	365 aa		4.99	□□□□□ -1.61
PRE3	YJL001W	FIP1	P45976	327 aa		4.99	□□□□□ -1.61
PRE3	YJL001W	PMT5	P52867	743 aa		4.99	□□□□□ -1.61
PRE3	YJL001W	YGL159W	P53110	370 aa		4.99	□□□□□ -1.61
PRE3	YJL001W	NRK1	P53915	240 aa		4.99	□□□□□ -1.61
PRE3	YJL001W	YKR005C	Q02203	525 aa		4.99	□□□□□ -1.61
PRE3	YJL001W	YMR254C	Q04838	102 aa		4.99	□□□□□ -1.61
PRE3	YJL001W	YMR226C	Q05016	267 aa	Known RBP	4.99	□□□□□ -1.61
PRE3	YJL001W	THP3	Q12049	470 aa	Known RBP	4.99	□□□□□ -1.61
PRE3	YJL001W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
PRE3	YJL001W	SNF4	P12904	322 aa		4.98	□□□□□ -1.61
PRE3	YJL001W	AFG1	P32317	509 aa		4.98	□□□□□ -1.61
PRE3	YJL001W	ECT1	P33412	323 aa		4.98	□□□□□ -1.61
PRE3	YJL001W	ANR2	P36090	516 aa	Predicted RBP	4.98	□□□□□ -1.61
PRE3	YJL001W	FLO10	P36170	1169 aa		4.98	□□□□□ -1.61
PRE3	YJL001W	THI2	P38141	450 aa		4.98	□□□□□ -1.61
PRE3	YJL001W	YND1	P40009	630 aa		4.98	□□□□□ -1.61
PRE3	YJL001W	CCC1	P47818	322 aa		4.98	□□□□□ -1.61
PRE3	YJL001W	YGR016W	P53209	190 aa		4.98	□□□□□ -1.61
PRE3	YJL001W	SMP3	Q04174	516 aa		4.98	□□□□□ -1.61
PRE3	YJL001W	DPB4	Q04603	196 aa	Known RBP	4.98	□□□□□ -1.61
PRE3	YJL001W	PST2	Q12335	198 aa	Known RBP	4.98	□□□□□ -1.61
PRE3	YJL001W	PCL9	Q12477	304 aa		4.98	□□□□□ -1.61
PRE3	YJL001W	ATP10	P18496	279 aa		4.97	□□□□□ -1.61
PRE3	YJL001W	VPS17	P32913	551 aa		4.97	□□□□□ -1.61
PRE3	YJL001W	ADH5	P38113	351 aa	Known RBP	4.97	□□□□□ -1.61
PRE3	YJL001W	SNZ1	Q03148	297 aa		4.97	□□□□□ -1.61
PRE3	YJL001W	HOT1	Q03213	719 aa		4.97	□□□□□ -1.61
PRE3	YJL001W	YMR315W	Q04869	349 aa	Known RBP	4.97	□□□□□ -1.61
PRE3	YJL001W	ORM2	Q06144	216 aa		4.97	□□□□□ -1.61
PRE3	YJL001W	MPD1	Q12404	318 aa	Known RBP	4.97	□□□□□ -1.61
PRE3	YJL001W	GDH1	P07262	454 aa	Known RBP	4.96	□□□□□ -1.62
PRE3	YJL001W	PUT3	P25502	979 aa	Predicted RBP	4.96	□□□□□ -1.62
PRE3	YJL001W	DOA4	P32571	926 aa		4.96	□□□□□ -1.62
PRE3	YJL001W	YBR144C	P34215	104 aa		4.96	□□□□□ -1.62
PRE3	YJL001W	TMA19	P35691	167 aa	Known RBP	4.96	□□□□□ -1.62
PRE3	YJL001W	AVT4	P50944	713 aa		4.96	□□□□□ -1.62
PRE3	YJL001W	COG5	P53951	403 aa		4.96	□□□□□ -1.62
PRE3	YJL001W	FBA1	P14540	359 aa	Known RBP	4.95	□□□□□ -1.62
PRE3	YJL001W	TOM40	P23644	387 aa	Known RBP	4.95	□□□□□ -1.62
PRE3	YJL001W	RPL5	P26321	297 aa	Known RBP	4.95	□□□□□ -1.62
PRE3	YJL001W	IMP1	P28627	190 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	SOR1	P35497	357 aa	Known RBP	4.95	□□□□□ -1.62
PRE3	YJL001W	NAT2	P37293	288 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	FLO5	P38894	1075 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	THO1	P40040	218 aa	Known RBP	4.95	□□□□□ -1.62
PRE3	YJL001W	DDI1	P40087	428 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	DLS1	P40366	167 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	RPA43	P46669	326 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	MRH4	P53166	561 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	YLR152C	P54072	576 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	YMD8	Q03697	442 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	ECM18	Q04623	453 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	RBS1	Q05672	457 aa	Known RBP	4.95	□□□□□ -1.62
PRE3	YJL001W	SOR2	Q07786	357 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	HUT1	Q12520	339 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	YPL119C-A	Q3E751	87 aa		4.95	□□□□□ -1.62
PRE3	YJL001W	CDC28	P00546	298 aa	Known RBP	4.94	□□□□□ -1.62
PRE3	YJL001W	AST1	P35183	429 aa		4.94	□□□□□ -1.62
PRE3	YJL001W	SWD2	P36104	329 aa	Predicted RBP	4.94	□□□□□ -1.62
PRE3	YJL001W	RIO2	P40160	425 aa	Known RBP	4.94	□□□□□ -1.62
PRE3	YJL001W	ERJ5	P43613	295 aa	Predicted RBP	4.94	□□□□□ -1.62
PRE3	YJL001W	FMP33	P46998	180 aa		4.94	□□□□□ -1.62
PRE3	YJL001W	SPG4	Q04438	115 aa		4.94	□□□□□ -1.62
PRE3	YJL001W	ARP10	Q04549	284 aa		4.94	□□□□□ -1.62
PRE3	YJL001W	LIP2	Q06005	328 aa		4.94	□□□□□ -1.62
PRE3	YJL001W	RFM1	Q12192	310 aa		4.94	□□□□□ -1.62
PRE3	YJL001W	BBP1	Q12365	385 aa		4.94	□□□□□ -1.62
PRE3	YJL001W	EAF3	Q12432	401 aa		4.94	□□□□□ -1.62
PRE3	YJL001W	SPS4	P09937	338 aa		4.93	□□□□□ -1.62
PRE3	YJL001W	SSH1	P38353	490 aa	Known RBP	4.93	□□□□□ -1.62
PRE3	YJL001W	SSN8	P47821	323 aa		4.93	□□□□□ -1.62
PRE3	YJL001W	UBP8	P50102	471 aa		4.93	□□□□□ -1.62
PRE3	YJL001W	OKP1	P53298	406 aa		4.93	□□□□□ -1.62
PRE3	YJL001W	RPL21A	Q02753	160 aa	Known RBP	4.93	□□□□□ -1.62
PRE3	YJL001W	MRX9	Q07349	420 aa	Known RBP	4.93	□□□□□ -1.62
PRE3	YJL001W	LOT6	Q07923	191 aa		4.93	□□□□□ -1.62
PRE3	YJL001W	FCY1	Q12178	158 aa		4.93	□□□□□ -1.62
PRE3	YJL001W	ATO3	Q12359	275 aa		4.93	□□□□□ -1.62
PRE3	YJL001W	RPL21B	Q12672	160 aa	Known RBP	4.93	□□□□□ -1.62
PRE3	YJL001W	BGL2	P15703	313 aa	Known RBP	4.92	□□□□□ -1.62
PRE3	YJL001W	ATG22	P25568	528 aa		4.92	□□□□□ -1.62
PRE3	YJL001W	COQ3	P27680	312 aa		4.92	□□□□□ -1.62
PRE3	YJL001W	NDC1	P32500	655 aa		4.92	□□□□□ -1.62
PRE3	YJL001W	CBT1	P36038	271 aa	Predicted RBP	4.92	□□□□□ -1.62
PRE3	YJL001W	SHE1	P38200	338 aa		4.92	□□□□□ -1.62
PRE3	YJL001W	SLM4	P38247	162 aa		4.92	□□□□□ -1.62
PRE3	YJL001W	AIM10	P39965	576 aa	Known RBP	4.92	□□□□□ -1.62
PRE3	YJL001W	YRB2	P40517	327 aa		4.92	□□□□□ -1.62
PRE3	YJL001W	SNL1	P40548	159 aa		4.92	□□□□□ -1.62
PRE3	YJL001W	MRX5	P47007	382 aa		4.92	□□□□□ -1.62
PRE3	YJL001W	STD1	Q02794	444 aa		4.92	□□□□□ -1.62
PRE3	YJL001W	MIX17	Q03667	156 aa		4.92	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 63.1 ms