RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 USP8P40818 1118 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 PKN2Q16513 984 aaKnown RBP28.88■■■□□ 2.21
MSX1-201ENST00000382723 CD302Q8IX05 232 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 ARMC5Q96C12 935 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 PPP1R13BQ96KQ4 1090 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 PLEKHA5Q9HAU0 1116 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 APOBEC3GQ9HC16 384 aaKnown RBP28.88■■■□□ 2.21
MSX1-201ENST00000382723 RNF19AQ9NV58 838 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 KLK14Q9P0G3 267 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 PCDHB2Q9Y5E7 798 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 EVI5O60447 810 aa28.87■■■□□ 2.21
MSX1-201ENST00000382723 PQBP1O60828 265 aaKnown RBP28.87■■■□□ 2.21
MSX1-201ENST00000382723 CCDC175P0C221 793 aa28.87■■■□□ 2.21
MSX1-201ENST00000382723 FERP16591 822 aa28.87■■■□□ 2.21
MSX1-201ENST00000382723 ZSCAN20P17040 1043 aaPredicted RBP28.87■■■□□ 2.21
MSX1-201ENST00000382723 NOP14P78316 857 aaKnown RBP28.87■■■□□ 2.21
MSX1-201ENST00000382723 C1orf127Q8N9H9 656 aa28.87■■■□□ 2.21
MSX1-201ENST00000382723 ZSCAN12O43309 604 aa28.86■■■□□ 2.21
MSX1-201ENST00000382723 MNX1P50219 401 aaPredicted RBP28.86■■■□□ 2.21
MSX1-201ENST00000382723 GUCY2FP51841 1108 aa28.86■■■□□ 2.21
MSX1-201ENST00000382723 TRAF7Q6Q0C0 670 aa28.86■■■□□ 2.21
MSX1-201ENST00000382723 ARID3AQ99856 593 aa28.86■■■□□ 2.21
MSX1-201ENST00000382723 KCND1Q9NSA2 647 aa28.86■■■□□ 2.21
MSX1-201ENST00000382723 C2CD2Q9Y426 696 aa28.86■■■□□ 2.21
MSX1-201ENST00000382723 NUB1Q9Y5A7 615 aa28.86■■■□□ 2.21
MSX1-201ENST00000382723 AKR1B10O60218 316 aa28.86■■■□□ 2.21
MSX1-201ENST00000382723 ITGB3P05106 788 aa28.86■■■□□ 2.21
MSX1-201ENST00000382723 KIF11P52732 1056 aa28.86■■■□□ 2.21
MSX1-201ENST00000382723 GLRA4Q5JXX5 417 aa28.86■■■□□ 2.21
MSX1-201ENST00000382723 ZMAT2Q96NC0 199 aaKnown RBP28.86■■■□□ 2.21
MSX1-201ENST00000382723 UMODL1Q5DID0 1318 aa28.85■■■□□ 2.21
MSX1-201ENST00000382723 ANK1P16157 1881 aa28.85■■■□□ 2.21
MSX1-201ENST00000382723 GCNT1Q02742 428 aa28.85■■■□□ 2.21
MSX1-201ENST00000382723 PTK2Q05397 1052 aa28.85■■■□□ 2.21
MSX1-201ENST00000382723 MAPK8IP2Q13387 824 aaPredicted RBP28.85■■■□□ 2.21
MSX1-201ENST00000382723 SGSM1Q2NKQ1 1148 aa28.85■■■□□ 2.21
MSX1-201ENST00000382723 CAGE1Q8TC20 777 aa28.85■■■□□ 2.21
MSX1-201ENST00000382723 FAM105AQ9NUU6 356 aa28.85■■■□□ 2.21
MSX1-201ENST00000382723 SIX4Q9UIU6 781 aa28.85■■■□□ 2.21
MSX1-201ENST00000382723 SSU72P8A0A1W2PR75 194 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 CCP110O43303 1012 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 ASS1P00966 412 aaKnown RBP28.84■■■□□ 2.21
MSX1-201ENST00000382723 CD4P01730 458 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 MBTPS1Q14703 1052 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 USP38Q8NB14 1042 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP28.84■■■□□ 2.21
MSX1-201ENST00000382723 MGEA5O60502 916 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 IBSPP21815 317 aaPredicted RBP28.84■■■□□ 2.21
MSX1-201ENST00000382723 PRKCIP41743 596 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 ZNF699Q32M78 642 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 ALKAL1Q6UXT8 129 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 SLC39A5Q6ZMH5 540 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 ENOSF1Q7L5Y1 443 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 ZNF571Q7Z3V5 609 aaPredicted RBP28.84■■■□□ 2.21
MSX1-201ENST00000382723 NT5DC4Q86YG4 428 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 REXO1L1PQ8IX06 675 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 DIS3LQ8TF46 1054 aaKnown RBP28.84■■■□□ 2.21
MSX1-201ENST00000382723 SHC3Q92529 594 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 DPP3Q9NY33 737 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 CNTN3Q9P232 1028 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 BZW2Q9Y6E2 419 aaKnown RBP28.84■■■□□ 2.21
MSX1-201ENST00000382723 SQORQ9Y6N5 450 aa28.84■■■□□ 2.21
MSX1-201ENST00000382723 EIF3CLB5ME19 914 aaKnown RBP28.83■■■□□ 2.21
MSX1-201ENST00000382723 CYP27A1Q02318 531 aa28.83■■■□□ 2.21
MSX1-201ENST00000382723 CUL2Q13617 745 aa28.83■■■□□ 2.21
MSX1-201ENST00000382723 LRRC8DQ7L1W4 858 aa28.83■■■□□ 2.21
MSX1-201ENST00000382723 FMNL3Q8IVF7 1028 aa28.83■■■□□ 2.21
MSX1-201ENST00000382723 EIF3CQ99613 913 aaKnown RBP28.83■■■□□ 2.21
MSX1-201ENST00000382723 REXO2Q9Y3B8 237 aaKnown RBP28.83■■■□□ 2.21
MSX1-201ENST00000382723 A0A0U1RQJ8 604 aa28.82■■■□□ 2.2
MSX1-201ENST00000382723 OFD1O75665 1012 aa28.82■■■□□ 2.2
MSX1-201ENST00000382723 IPO7O95373 1038 aaKnown RBP28.82■■■□□ 2.2
MSX1-201ENST00000382723 CCDC172P0C7W6 258 aa28.82■■■□□ 2.2
MSX1-201ENST00000382723 GFPT1Q06210 699 aaPredicted RBP28.82■■■□□ 2.2
MSX1-201ENST00000382723 ASTE1Q2TB18 679 aaPredicted RBP28.82■■■□□ 2.2
MSX1-201ENST00000382723 ATRIPQ8WXE1 791 aa28.82■■■□□ 2.2
MSX1-201ENST00000382723 FAM81BQ96LP2 452 aa28.82■■■□□ 2.2
MSX1-201ENST00000382723 XYLT2Q9H1B5 865 aa28.82■■■□□ 2.2
MSX1-201ENST00000382723 DERAQ9Y315 318 aa28.82■■■□□ 2.2
MSX1-201ENST00000382723 SELPP16109 830 aa28.82■■■□□ 2.2
MSX1-201ENST00000382723 POLR2BP30876 1174 aaKnown RBP28.82■■■□□ 2.2
MSX1-201ENST00000382723 BFSP2Q13515 415 aa28.82■■■□□ 2.2
MSX1-201ENST00000382723 FAM71AQ8IYT1 594 aa28.82■■■□□ 2.2
MSX1-201ENST00000382723 C18orf25Q96B23 403 aaPredicted RBP28.82■■■□□ 2.2
MSX1-201ENST00000382723 ADAM2Q99965 735 aa28.82■■■□□ 2.2
MSX1-201ENST00000382723 R3HCC1Q9Y3T6 440 aaKnown RBP28.82■■■□□ 2.2
MSX1-201ENST00000382723 MEIS3P2A8K0S8 358 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 ZNF263O14978 683 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 TLR3O15455 904 aaKnown RBP28.81■■■□□ 2.2
MSX1-201ENST00000382723 KRT5P13647 590 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 DSC3Q14574 896 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 SPA17Q15506 151 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 CXorf38Q8TB03 319 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 C16orf45Q96MC5 204 aaPredicted RBP28.81■■■□□ 2.2
MSX1-201ENST00000382723 TUBGCP4Q9UGJ1 667 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 ADAMTS1Q9UHI8 967 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 ITGA11Q9UKX5 1188 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 AGAP1Q9UPQ3 857 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 SMIM28A0A1B0GU29 152 aa28.81■■■□□ 2.2
MSX1-201ENST00000382723 CYP26A1O43174 497 aa28.81■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms