RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 PKP3Q9Y446 797 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 WDR62O43379 1518 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 PHF2O75151 1096 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 TDP2O95551 362 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 IRF1P10914 325 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 CAPZA2P47755 286 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 ATL2Q8NHH9 583 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 SHCBP1LQ9BZQ2 653 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 CCDC134Q9H6E4 229 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 GEMIN8Q9NWZ8 242 aaKnown RBP16.84■□□□□ 0.29
COL18A1-203ENST00000359759 CHMP2BQ9UQN3 213 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 PTK7Q13308 1070 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 IL31Q6EBC2 164 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 TRIM69Q86WT6 500 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 CCDC60Q8IWA6 550 aaPredicted RBP16.84■□□□□ 0.29
COL18A1-203ENST00000359759 PTPRN2Q92932 1015 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 TMEM117Q9H0C3 514 aa16.84■□□□□ 0.29
COL18A1-203ENST00000359759 B2RBV5 119 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 GNAT1P11488 350 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 ELMSAN1Q6PJG2 1045 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 MTERF3Q96E29 417 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 STRBPQ96SI9 672 aaKnown RBP16.83■□□□□ 0.29
COL18A1-203ENST00000359759 CHP1Q99653 195 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 CAAP1Q9H8G2 361 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 LY9Q9HBG7 655 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 CD248Q9HCU0 757 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 RAB6BQ9NRW1 208 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 TJP2Q9UDY2 1190 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 KIF28PB7ZC32 967 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 CDH2P19022 906 aaPredicted RBP16.83■□□□□ 0.29
COL18A1-203ENST00000359759 IL6STP40189 918 aaPredicted RBP16.83■□□□□ 0.29
COL18A1-203ENST00000359759 DEFA1P59665 94 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 DEFA3P59666 94 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 TRIM25Q14258 630 aaKnown RBP16.83■□□□□ 0.29
COL18A1-203ENST00000359759 TRIP4Q15650 581 aaPredicted RBP16.83■□□□□ 0.29
COL18A1-203ENST00000359759 SIRT2Q8IXJ6 389 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 ADGRF4Q8IZF3 695 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 AGGF1Q8N302 714 aaeCLIP16.83■□□□□ 0.293e-8■■■■■ 82
COL18A1-203ENST00000359759 DIS3LQ8TF46 1054 aaKnown RBP16.83■□□□□ 0.29
COL18A1-203ENST00000359759 TRIM8Q9BZR9 551 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 ZC3H7BQ9UGR2 993 aaKnown RBP16.83■□□□□ 0.29
COL18A1-203ENST00000359759 CTTNBP2Q8WZ74 1663 aa16.83■□□□□ 0.29
COL18A1-203ENST00000359759 ABCC10Q5T3U5 1492 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 RNF103O00237 685 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 AKT1P31749 480 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 IRX1P78414 480 aaPredicted RBP16.83■□□□□ 0.28
COL18A1-203ENST00000359759 PLIN5Q00G26 463 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 RBM15Q96T37 977 aaKnown RBP eCLIP16.83■□□□□ 0.284e-10■■■■□ 26.2
COL18A1-203ENST00000359759 NEU2Q9Y3R4 380 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 IGF2BP3O00425 579 aaKnown RBP eCLIP16.83■□□□□ 0.28
COL18A1-203ENST00000359759 TRPM8Q7Z2W7 1104 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 MCEEQ96PE7 176 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 AGO2Q9UKV8 859 aaKnown RBP16.83■□□□□ 0.28
COL18A1-203ENST00000359759 GRK2P25098 689 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 CRKP46108 304 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 WASHC5Q12768 1159 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 MTHFD1LQ6UB35 978 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 SCFD1Q8WVM8 642 aa16.83■□□□□ 0.28
COL18A1-203ENST00000359759 ZC3H4Q9UPT8 1303 aaKnown RBP16.83■□□□□ 0.28
COL18A1-203ENST00000359759 A0A1B0GW55 424 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 DUX4L2P0CJ85 424 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 DUX4L3P0CJ86 424 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 DUX4L4P0CJ87 422 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 DUX4L5P0CJ88 424 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 DUX4L6P0CJ89 424 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 DUX4L7P0CJ90 424 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 NMT1P30419 496 aaKnown RBP16.82■□□□□ 0.28
COL18A1-203ENST00000359759 ZNF200P98182 395 aaPredicted RBP16.82■□□□□ 0.28
COL18A1-203ENST00000359759 SUSD4Q5VX71 490 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 WNK4Q96J92 1243 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 CACNA2D2Q9NY47 1150 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 SCN3BQ9NY72 215 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 C6orf203Q9P0P8 240 aaPredicted RBP16.82■□□□□ 0.28
COL18A1-203ENST00000359759 DUX4Q9UBX2 424 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 CYLC2Q14093 348 aaPredicted RBP16.82■□□□□ 0.28
COL18A1-203ENST00000359759 RAB42Q8N4Z0 105 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 CEP95Q96GE4 821 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 FAM167AQ96KS9 214 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 SPATA33Q96N06 139 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 PSMC3IPQ9P2W1 217 aaPredicted RBP16.82■□□□□ 0.28
COL18A1-203ENST00000359759 TARSP26639 723 aaKnown RBP16.82■□□□□ 0.28
COL18A1-203ENST00000359759 ARHGEF6Q15052 776 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 FGD2Q7Z6J4 655 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 ASAP3Q8TDY4 903 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 SRPK1Q96SB4 655 aaKnown RBP16.82■□□□□ 0.28
COL18A1-203ENST00000359759 FEM1BQ9UK73 627 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 LOC100653049A0A140TA62 436 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 KRT34O76011 436 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 QARSP47897 775 aaKnown RBP16.82■□□□□ 0.28
COL18A1-203ENST00000359759 MAPRE1Q15691 268 aaKnown RBP16.82■□□□□ 0.28
COL18A1-203ENST00000359759 APOL5Q9BWW9 433 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 SNX12Q9UMY4 172 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 PZPP20742 1482 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 GRAP2O75791 330 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 RCOR2Q8IZ40 523 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 GIMAP8Q8ND71 665 aaPredicted RBP16.82■□□□□ 0.28
COL18A1-203ENST00000359759 APPL2Q8NEU8 664 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 CNDP1Q96KN2 507 aa16.82■□□□□ 0.28
COL18A1-203ENST00000359759 PVALEFA0A1B0GWK0 134 aa16.81■□□□□ 0.28
COL18A1-203ENST00000359759 BBOX1O75936 387 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms