RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ATP6V1G2O95670 118 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 CALB1P05937 261 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 EN1Q05925 392 aaPredicted RBP12.13□□□□□ -0.47
VPS39-201ENST00000318006 DDX42Q86XP3 938 aaKnown RBP eCLIP12.13□□□□□ -0.47
VPS39-201ENST00000318006 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.13□□□□□ -0.47
VPS39-201ENST00000318006 C11orf70Q9BRQ4 267 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 ERP44Q9BS26 406 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 FAM49AQ9H0Q0 323 aaPredicted RBP12.13□□□□□ -0.47
VPS39-201ENST00000318006 GID8Q9NWU2 228 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 PCDHA10Q9Y5I2 948 aa12.13□□□□□ -0.47
VPS39-201ENST00000318006 MYBL1P10243 752 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 PAX7P23759 505 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 PMS1P54277 932 aaKnown RBP12.12□□□□□ -0.47
VPS39-201ENST00000318006 DSG1Q02413 1049 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 MDH1BQ5I0G3 518 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 ZNF746Q6NUN9 644 aaPredicted RBP12.12□□□□□ -0.47
VPS39-201ENST00000318006 CATSPER4Q7RTX7 472 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 HAUS6Q7Z4H7 955 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 ABI1Q8IZP0 508 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 GCOM2Q9BZD3 368 aaPredicted RBP12.12□□□□□ -0.47
VPS39-201ENST00000318006 FOXP3Q9BZS1 431 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 SEC24DO94855 1032 aaPredicted RBP12.12□□□□□ -0.47
VPS39-201ENST00000318006 TRIM49P0CI25 452 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 TRIM49CP0CI26 452 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 RCN1Q15293 331 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 ZNF394Q53GI3 561 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 LRRC8EQ6NSJ5 796 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 C4orf33Q8N1A6 199 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 CCNYL1Q8N7R7 359 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 RBM15Q96T37 977 aaKnown RBP eCLIP12.12□□□□□ -0.47
VPS39-201ENST00000318006 CARD9Q9H257 536 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 RPAP3Q9H6T3 665 aaPredicted RBP12.12□□□□□ -0.47
VPS39-201ENST00000318006 PSMC3IPQ9P2W1 217 aaPredicted RBP12.12□□□□□ -0.47
VPS39-201ENST00000318006 GHRP10912 638 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 ARSEP51690 589 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 STK4Q13043 487 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 TMEM270Q6UE05 265 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 RIBC1Q8N443 379 aaPredicted RBP12.12□□□□□ -0.47
VPS39-201ENST00000318006 SUCLA2Q9P2R7 463 aaPredicted RBP12.12□□□□□ -0.47
VPS39-201ENST00000318006 SEPT3Q9UH03 358 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 ATP11BQ9Y2G3 1177 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 SLIT1O75093 1534 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 KDM6AO15550 1401 aaPredicted RBP12.12□□□□□ -0.47
VPS39-201ENST00000318006 C16orf96A6NNT2 1141 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 ASAP2O43150 1006 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 KLHL2O95198 593 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 NAB2Q15742 525 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 RBM43Q6ZSC3 357 aaKnown RBP12.12□□□□□ -0.47
VPS39-201ENST00000318006 ARMCX2Q7L311 632 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 ELOA2Q8IYF1 753 aaPredicted RBP12.12□□□□□ -0.47
VPS39-201ENST00000318006 BBS5Q8N3I7 341 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 TMBIM4Q9HC24 238 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 CHMP2BQ9UQN3 213 aa12.12□□□□□ -0.47
VPS39-201ENST00000318006 DCCP43146 1447 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 KLRK1P26718 216 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 PHKA2P46019 1235 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 PRAMEP78395 509 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 SKOR1P84550 965 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 RYBPQ8N488 228 aaPredicted RBP12.11□□□□□ -0.47
VPS39-201ENST00000318006 SCG3Q8WXD2 468 aaKnown RBP12.11□□□□□ -0.47
VPS39-201ENST00000318006 LPAR1Q92633 364 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 ACAP3Q96P50 834 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 DCLRE1BQ9H816 532 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 ANKZF1Q9H8Y5 726 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 OLFML3Q9NRN5 406 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 IP6K2Q9UHH9 426 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 GOLGA8RI6L899 631 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 GFAPP14136 432 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 FGFR2P21802 821 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 NMT1P30419 496 aaKnown RBP12.11□□□□□ -0.47
VPS39-201ENST00000318006 SLC29A2Q14542 456 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 ZNF568Q3ZCX4 644 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 SLC10A5Q5PT55 438 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 SIX6OS1Q8N1H7 587 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 DDI1Q8WTU0 396 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 C9orf72Q96LT7 481 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 POLR3FQ9H1D9 316 aaPredicted RBP12.11□□□□□ -0.47
VPS39-201ENST00000318006 JMJD4Q9H9V9 463 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 PRR12Q9ULL5 1215 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 MYMKA6NI61 221 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 O00370 1275 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 SLC26A4O43511 780 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 KRT7P08729 469 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 TNFAIP2Q03169 654 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 BTKQ06187 659 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 INPP5AQ14642 412 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 ZNF699Q32M78 642 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 ADCK1Q86TW2 530 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 DDHD1Q8NEL9 900 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 CASKIN2Q8WXE0 1202 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 NGRNQ9NPE2 291 aaKnown RBP12.11□□□□□ -0.47
VPS39-201ENST00000318006 DDX56Q9NY93 547 aaKnown RBP12.11□□□□□ -0.47
VPS39-201ENST00000318006 RAB21Q9UL25 225 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 EMSYQ7Z589 1322 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 ARHGEF37A1IGU5 675 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 TBXAS1P24557 533 aaPredicted RBP12.11□□□□□ -0.47
VPS39-201ENST00000318006 TARSP26639 723 aaKnown RBP12.11□□□□□ -0.47
VPS39-201ENST00000318006 TYK2P29597 1187 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 GALCP54803 685 aa12.11□□□□□ -0.47
VPS39-201ENST00000318006 CMTM5Q96DZ9 223 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms