RNA–Protein interactions for RNA: YKR100C

SKG1, Transcript of Transmembrane protein with a role in cell wall polymer composition, yeast

Gene SKG1, Length 1,068 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SKG1	YKR100C	TOA2	P32774	122 aa		3.63	□□□□□ -1.83
SKG1	YKR100C	PDC2	P32896	925 aa		3.63	□□□□□ -1.83
SKG1	YKR100C	VPS21	P36017	210 aa	Known RBP	3.63	□□□□□ -1.83
SKG1	YKR100C	PEX22	P39718	180 aa		3.63	□□□□□ -1.83
SKG1	YKR100C	INP1	Q03694	420 aa		3.63	□□□□□ -1.83
SKG1	YKR100C	ASA1	Q06822	443 aa		3.63	□□□□□ -1.83
SKG1	YKR100C	RPS18A	P0CX55	146 aa	Known RBP	3.62	□□□□□ -1.83
SKG1	YKR100C	RPS18B	P0CX56	146 aa	Predicted RBP	3.62	□□□□□ -1.83
SKG1	YKR100C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3.62	□□□□□ -1.83	not detected
SKG1	YKR100C	ROX3	P25046	220 aa		3.62	□□□□□ -1.83
SKG1	YKR100C	PHO91	P27514	894 aa		3.62	□□□□□ -1.83
SKG1	YKR100C	HIS2	P38635	335 aa		3.62	□□□□□ -1.83
SKG1	YKR100C	NSA1	P53136	463 aa	Predicted RBP	3.62	□□□□□ -1.83
SKG1	YKR100C	URC2	Q04411	772 aa		3.62	□□□□□ -1.83
SKG1	YKR100C	YDR278C	Q05612	105 aa		3.62	□□□□□ -1.83
SKG1	YKR100C	YLR177W	Q06251	628 aa		3.62	□□□□□ -1.83
SKG1	YKR100C	TIR4	Q12218	487 aa	Predicted RBP	3.62	□□□□□ -1.83
SKG1	YKR100C	RUD3	Q12234	484 aa	Known RBP	3.62	□□□□□ -1.83
SKG1	YKR100C	ISA2	Q12425	185 aa		3.62	□□□□□ -1.83
SKG1	YKR100C	KSS1	P14681	368 aa		3.61	□□□□□ -1.83
SKG1	YKR100C	YET1	P35723	206 aa		3.61	□□□□□ -1.83
SKG1	YKR100C	YBR241C	P38142	488 aa		3.61	□□□□□ -1.83
SKG1	YKR100C	COG3	P40094	801 aa		3.61	□□□□□ -1.83
SKG1	YKR100C	YNL140C	P53910	189 aa		3.61	□□□□□ -1.83
SKG1	YKR100C	RVB1	Q03940	463 aa	Known RBP	3.61	□□□□□ -1.83
SKG1	YKR100C	NIP7	Q08962	181 aa	Known RBP	3.61	□□□□□ -1.83
SKG1	YKR100C	PDE2	P06776	526 aa		3.6	□□□□□ -1.83
SKG1	YKR100C	PET191	Q02772	108 aa		3.6	□□□□□ -1.83
SKG1	YKR100C	ABZ2	Q03266	374 aa		3.6	□□□□□ -1.83
SKG1	YKR100C	YDR115W	Q04598	105 aa		3.6	□□□□□ -1.83
SKG1	YKR100C	DCI1	Q08558	271 aa		3.6	□□□□□ -1.83
SKG1	YKR100C	SLF1	Q12034	447 aa	Known RBP	3.6	□□□□□ -1.83
SKG1	YKR100C	RPS16A	P0CX51	143 aa	Known RBP	3.59	□□□□□ -1.83
SKG1	YKR100C	RPS16B	P0CX52	143 aa	Known RBP	3.59	□□□□□ -1.83
SKG1	YKR100C	TOA1	P32773	286 aa		3.59	□□□□□ -1.83
SKG1	YKR100C	PTM1	P32857	523 aa		3.59	□□□□□ -1.83
SKG1	YKR100C	GDH2	P33327	1092 aa	Known RBP	3.59	□□□□□ -1.83
SKG1	YKR100C	YHR180W	P38868	163 aa		3.59	□□□□□ -1.83
SKG1	YKR100C	CIN2	P46670	268 aa		3.59	□□□□□ -1.83
SKG1	YKR100C	NHP10	Q03435	203 aa		3.59	□□□□□ -1.83
SKG1	YKR100C	HMS1	Q12398	434 aa		3.59	□□□□□ -1.83
SKG1	YKR100C	MHT1	Q12525	324 aa		3.59	□□□□□ -1.83
SKG1	YKR100C	TCA17	P32613	152 aa		3.58	□□□□□ -1.84
SKG1	YKR100C	YOR062C	P36025	268 aa		3.58	□□□□□ -1.84
SKG1	YKR100C	SFM1	Q12314	213 aa		3.58	□□□□□ -1.84
SKG1	YKR100C	MRPS28	P21771	286 aa		3.57	□□□□□ -1.84
SKG1	YKR100C	ZRT3	P34240	503 aa		3.57	□□□□□ -1.84
SKG1	YKR100C	FMP23	P38231	175 aa		3.57	□□□□□ -1.84
SKG1	YKR100C	AIM2	P39721	246 aa		3.57	□□□□□ -1.84
SKG1	YKR100C	SCC4	P40090	624 aa		3.57	□□□□□ -1.84
SKG1	YKR100C	YRB1	P41920	201 aa	Known RBP	3.57	□□□□□ -1.84
SKG1	YKR100C	VPS20	Q04272	221 aa		3.57	□□□□□ -1.84
SKG1	YKR100C	GMC2	Q06201	188 aa		3.57	□□□□□ -1.84
SKG1	YKR100C	LDS2	Q08218	356 aa		3.57	□□□□□ -1.84
SKG1	YKR100C	FRE6	Q12473	712 aa		3.57	□□□□□ -1.84
SKG1	YKR100C	COX2	P00410	251 aa		3.56	□□□□□ -1.84
SKG1	YKR100C	RPB4	P20433	221 aa	Predicted RBP	3.56	□□□□□ -1.84
SKG1	YKR100C	SRB4	P32569	687 aa		3.56	□□□□□ -1.84
SKG1	YKR100C	VMA8	P32610	256 aa	Known RBP	3.56	□□□□□ -1.84
SKG1	YKR100C	UTR5	P32630	166 aa		3.56	□□□□□ -1.84
SKG1	YKR100C	LTV1	P34078	463 aa		3.56	□□□□□ -1.84
SKG1	YKR100C	SMP1	P38128	452 aa		3.56	□□□□□ -1.84
SKG1	YKR100C	UTP6	Q02354	440 aa	Known RBP	3.56	□□□□□ -1.84
SKG1	YKR100C	IRC19	Q07843	230 aa		3.56	□□□□□ -1.84
SKG1	YKR100C	MCP1	Q12106	302 aa		3.56	□□□□□ -1.84
SKG1	YKR100C	GET4	Q12125	312 aa		3.56	□□□□□ -1.84
SKG1	YKR100C	YCL012C	Q8J0M4	134 aa		3.56	□□□□□ -1.84
SKG1	YKR100C	TOM40	P23644	387 aa	Known RBP	3.55	□□□□□ -1.84
SKG1	YKR100C	BLI1	P35727	113 aa		3.55	□□□□□ -1.84
SKG1	YKR100C	MIC19	P43594	170 aa		3.55	□□□□□ -1.84
SKG1	YKR100C	GCD14	P46959	383 aa	Predicted RBP	3.55	□□□□□ -1.84
SKG1	YKR100C	SSQ1	Q05931	657 aa	Predicted RBP	3.55	□□□□□ -1.84
SKG1	YKR100C	YOL085C	Q99345	113 aa		3.55	□□□□□ -1.84
SKG1	YKR100C	URA10	P30402	227 aa		3.54	□□□□□ -1.84
SKG1	YKR100C	SRL3	P36167	246 aa		3.54	□□□□□ -1.84
SKG1	YKR100C	GTO1	P48239	356 aa		3.54	□□□□□ -1.84
SKG1	YKR100C	CAB4	P53332	305 aa		3.54	□□□□□ -1.84
SKG1	YKR100C	MEH1	Q02205	184 aa		3.54	□□□□□ -1.84
SKG1	YKR100C	YMR010W	Q03687	405 aa		3.54	□□□□□ -1.84
SKG1	YKR100C	CDC123	Q05791	360 aa		3.54	□□□□□ -1.84
SKG1	YKR100C	STE23	Q06010	1027 aa		3.54	□□□□□ -1.84
SKG1	YKR100C	YPR195C	Q06594	109 aa		3.54	□□□□□ -1.84
SKG1	YKR100C	NRG2	P38082	220 aa		3.53	□□□□□ -1.84
SKG1	YKR100C	PEX32	P38292	413 aa		3.53	□□□□□ -1.84
SKG1	YKR100C	FSH2	Q05015	223 aa		3.53	□□□□□ -1.84
SKG1	YKR100C	BRX1	Q08235	291 aa	Known RBP	3.53	□□□□□ -1.84
SKG1	YKR100C	ATP16	Q12165	160 aa		3.53	□□□□□ -1.84
SKG1	YKR100C	YHR214C-E	Q8TGK0	99 aa		3.53	□□□□□ -1.84
SKG1	YKR100C	TDH1	P00360	332 aa	Known RBP	3.52	□□□□□ -1.85
SKG1	YKR100C	SSO1	P32867	290 aa		3.52	□□□□□ -1.85
SKG1	YKR100C	DBP6	P53734	629 aa	Known RBP	3.52	□□□□□ -1.85
SKG1	YKR100C	ASI3	P53983	676 aa		3.52	□□□□□ -1.85
SKG1	YKR100C	SCS7	Q03529	384 aa		3.52	□□□□□ -1.85
SKG1	YKR100C	RDS3	Q06835	107 aa	Predicted RBP	3.52	□□□□□ -1.85
SKG1	YKR100C	SGA1	P08019	549 aa		3.51	□□□□□ -1.85
SKG1	YKR100C	LDS1	P31379	325 aa		3.51	□□□□□ -1.85
SKG1	YKR100C	YDR274C	P87283	123 aa		3.51	□□□□□ -1.85
SKG1	YKR100C	UTP15	Q04305	513 aa	Known RBP	3.51	□□□□□ -1.85
SKG1	YKR100C	SPT3	P06844	337 aa		3.5	□□□□□ -1.85
SKG1	YKR100C	RPL16A	P26784	199 aa	Known RBP	3.5	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 71.9 ms