RNA–Protein interactions for RNA: YBR263W

SHM1, Transcript of Mitochondrial serine hydroxymethyltransferase, yeast

Gene SHM1, Length 1,473 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHM1	YBR263W	FLX1	P40464	311 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	AGE2	P40529	298 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	OST1	P41543	476 aa	Known RBP	4.82	□□□□□ -1.64
SHM1	YBR263W	ERJ5	P43613	295 aa	Predicted RBP	4.82	□□□□□ -1.64
SHM1	YBR263W	YJL016W	P47072	561 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	POP6	P53218	158 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	NRK1	P53915	240 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	PLP1	Q04004	230 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	DCS1	Q06151	350 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	PEX30	Q06169	523 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	TGS1	Q12052	315 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	ORT1	Q12375	292 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	RPL30	P14120	105 aa	Known RBP	4.81	□□□□□ -1.64
SHM1	YBR263W	ARO3	P14843	370 aa	Known RBP	4.81	□□□□□ -1.64
SHM1	YBR263W	DEG1	P31115	442 aa	Known RBP	4.81	□□□□□ -1.64
SHM1	YBR263W	YKL187C	P34231	750 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	TMA19	P35691	167 aa	Known RBP	4.81	□□□□□ -1.64
SHM1	YBR263W	RCN1	P36054	211 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	YBR137W	P38276	179 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	GAT2	P40209	560 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	YIL029C	P40538	142 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	BUD8	P41698	603 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	ABM1	P47146	123 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	UBC13	P52490	153 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	YGL159W	P53110	370 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	CRZ1	P53968	678 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	SKO1	Q02100	647 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	SRL4	Q03085	281 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	GAT3	Q07928	141 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	PEX27	Q08580	376 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	RRS1	Q08746	203 aa	Known RBP	4.81	□□□□□ -1.64
SHM1	YBR263W	ATG41	Q12048	136 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	MSH5	Q12175	901 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	DCP1	Q12517	231 aa	Predicted RBP	4.81	□□□□□ -1.64
SHM1	YBR263W	MSI1	P13712	422 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	CNE1	P27825	502 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	SNC2	P33328	115 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	PPZ2	P33329	710 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	MCH2	P36032	473 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	TCM62	P38228	572 aa	Known RBP	4.81	□□□□□ -1.64
SHM1	YBR263W	ATG18	P43601	500 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	RAI1	P53063	387 aa	Known RBP	4.81	□□□□□ -1.64
SHM1	YBR263W	MTL1	P53214	551 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	YGR054W	P53235	642 aa	Known RBP	4.81	□□□□□ -1.64
SHM1	YBR263W	YNR048W	P53740	393 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	RNH201	P53942	307 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	BUD25	P85052	153 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	CIK1	Q01649	594 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	TDA1	Q03533	586 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	YTH1	Q06102	208 aa	Predicted RBP	4.81	□□□□□ -1.64
SHM1	YBR263W	NGL1	Q08213	363 aa	Known RBP	4.81	□□□□□ -1.64
SHM1	YBR263W	TRM13	Q12383	476 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	SUS1	Q6WNK7	96 aa		4.81	□□□□□ -1.64
SHM1	YBR263W	MET3	P08536	511 aa		4.8	□□□□□ -1.64
SHM1	YBR263W	HOM6	P31116	359 aa	Known RBP	4.8	□□□□□ -1.64
SHM1	YBR263W	AFG1	P32317	509 aa		4.8	□□□□□ -1.64
SHM1	YBR263W	DBF20	P32328	564 aa		4.8	□□□□□ -1.64
SHM1	YBR263W	REC114	P32841	428 aa		4.8	□□□□□ -1.64
SHM1	YBR263W	YHK8	P38776	514 aa		4.8	□□□□□ -1.64
SHM1	YBR263W	BNA6	P43619	295 aa		4.8	□□□□□ -1.64
SHM1	YBR263W	SCW4	P53334	386 aa	Known RBP	4.8	□□□□□ -1.64
SHM1	YBR263W	SED1	Q01589	338 aa		4.8	□□□□□ -1.64
SHM1	YBR263W	YMR279C	Q03263	540 aa		4.8	□□□□□ -1.64
SHM1	YBR263W	GPI17	Q04080	534 aa		4.8	□□□□□ -1.64
SHM1	YBR263W	DLT1	Q04216	342 aa		4.8	□□□□□ -1.64
SHM1	YBR263W	USB1	Q12208	290 aa	Known RBP	4.8	□□□□□ -1.64
SHM1	YBR263W	HTZ1	Q12692	134 aa	Known RBP	4.8	□□□□□ -1.64
SHM1	YBR263W	RPN13	O13563	156 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	SAG1	P20840	650 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	CLB2	P24869	491 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	PET18	P25362	215 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	PRE4	P30657	266 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	MTC7	P32633	139 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	FAT1	P38225	669 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	MBA1	P38300	278 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	ARC40	P38328	384 aa	Known RBP	4.79	□□□□□ -1.64
SHM1	YBR263W	ECM14	P38836	430 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	YND1	P40009	630 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	AVT4	P50944	713 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	CWC23	P52868	283 aa	Predicted RBP	4.79	□□□□□ -1.64
SHM1	YBR263W	MRH4	P53166	561 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	ERV29	P53337	310 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	PHO92	Q06390	306 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	YPR196W	Q06595	470 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	PML1	Q07930	204 aa	Predicted RBP	4.79	□□□□□ -1.64
SHM1	YBR263W	ATP16	Q12165	160 aa		4.79	□□□□□ -1.64
SHM1	YBR263W	TMA7	Q3E764	64 aa	Known RBP	4.79	□□□□□ -1.64
SHM1	YBR263W	RPL6B	P05739	176 aa	Known RBP	4.78	□□□□□ -1.64
SHM1	YBR263W	RPS23A	P0CX29	145 aa	Known RBP	4.78	□□□□□ -1.64
SHM1	YBR263W	RPS23B	P0CX30	145 aa		4.78	□□□□□ -1.64
SHM1	YBR263W	HXT2	P23585	541 aa		4.78	□□□□□ -1.64
SHM1	YBR263W	PPQ1	P32945	549 aa		4.78	□□□□□ -1.64
SHM1	YBR263W	UMP1	P38293	148 aa		4.78	□□□□□ -1.64
SHM1	YBR263W	ARO9	P38840	513 aa	Predicted RBP	4.78	□□□□□ -1.64
SHM1	YBR263W	MIT1	P40002	666 aa		4.78	□□□□□ -1.64
SHM1	YBR263W	FCY21	P40039	528 aa		4.78	□□□□□ -1.64
SHM1	YBR263W	SER2	P42941	309 aa		4.78	□□□□□ -1.64
SHM1	YBR263W	NSA1	P53136	463 aa	Predicted RBP	4.78	□□□□□ -1.64
SHM1	YBR263W	FMP48	P53233	369 aa		4.78	□□□□□ -1.64
SHM1	YBR263W	TIM10	P87108	93 aa		4.78	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 58.8 ms