RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 PPM1KQ8N3J5 372 aa28.95■■■□□ 2.23
MSX1-201ENST00000382723 SYN2Q92777 582 aaPredicted RBP28.95■■■□□ 2.23
MSX1-201ENST00000382723 NT5C1BQ96P26 610 aa28.95■■■□□ 2.23
MSX1-201ENST00000382723 APOL6Q9BWW8 343 aa28.95■■■□□ 2.23
MSX1-201ENST00000382723 NHEJ1Q9H9Q4 299 aaPredicted RBP28.95■■■□□ 2.23
MSX1-201ENST00000382723 USP27XA6NNY8 438 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 CLSTN1O94985 981 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 NFICP08651 508 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 GHRP10912 638 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 ASIC2Q16515 512 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 UBXN11Q5T124 520 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 SCARA3Q6AZY7 606 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 TRAPPC11Q7Z392 1133 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 ZNF333Q96JL9 665 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 AGO3Q9H9G7 860 aaKnown RBP28.94■■■□□ 2.22
MSX1-201ENST00000382723 ARHGAP20Q9P2F6 1191 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 RFX1P22670 979 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 KAT5Q92993 513 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 ANKRD36BP1Q96IX9 119 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 AIPL1Q9NZN9 384 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 MYO6Q9UM54 1294 aa28.94■■■□□ 2.22
MSX1-201ENST00000382723 F8VZ95 297 aa28.93■■■□□ 2.22
MSX1-201ENST00000382723 ZNF500O60304 480 aaPredicted RBP28.93■■■□□ 2.22
MSX1-201ENST00000382723 TNNC2P02585 160 aa28.93■■■□□ 2.22
MSX1-201ENST00000382723 TFRCP02786 760 aaKnown RBP28.93■■■□□ 2.22
MSX1-201ENST00000382723 CKBP12277 381 aa28.93■■■□□ 2.22
MSX1-201ENST00000382723 CDK17Q00537 523 aa28.93■■■□□ 2.22
MSX1-201ENST00000382723 POU5F1Q01860 360 aaKnown RBP28.93■■■□□ 2.22
MSX1-201ENST00000382723 NCOA4Q13772 614 aa28.93■■■□□ 2.22
MSX1-201ENST00000382723 TDRD12Q587J7 1177 aaKnown RBP28.93■■■□□ 2.22
MSX1-201ENST00000382723 WDR44Q5JSH3 913 aa28.93■■■□□ 2.22
MSX1-201ENST00000382723 FBXO47Q5MNV8 452 aa28.93■■■□□ 2.22
MSX1-201ENST00000382723 TATDN2Q93075 761 aa28.93■■■□□ 2.22
MSX1-201ENST00000382723 GPR182O15218 404 aa28.92■■■□□ 2.22
MSX1-201ENST00000382723 HSPA1AP0DMV8 641 aaKnown RBP28.92■■■□□ 2.22
MSX1-201ENST00000382723 HSPA1BP0DMV9 641 aaKnown RBP28.92■■■□□ 2.22
MSX1-201ENST00000382723 CD52P31358 61 aa28.92■■■□□ 2.22
MSX1-201ENST00000382723 STAT1P42224 750 aa28.92■■■□□ 2.22
MSX1-201ENST00000382723 CDK7P50613 346 aa28.92■■■□□ 2.22
MSX1-201ENST00000382723 CCAR2Q8N163 923 aaKnown RBP28.92■■■□□ 2.22
MSX1-201ENST00000382723 U2AF1L4Q8WU68 220 aaKnown RBP28.92■■■□□ 2.22
MSX1-201ENST00000382723 GPR88Q9GZN0 384 aa28.92■■■□□ 2.22
MSX1-201ENST00000382723 ASB7Q9H672 318 aa28.92■■■□□ 2.22
MSX1-201ENST00000382723 RRAGDQ9NQL2 400 aaPredicted RBP28.92■■■□□ 2.22
MSX1-201ENST00000382723 DAAM1Q9Y4D1 1078 aa28.92■■■□□ 2.22
MSX1-201ENST00000382723 CST3P01034 146 aaPredicted RBP28.92■■■□□ 2.22
MSX1-201ENST00000382723 AKAP5P24588 427 aa28.92■■■□□ 2.22
MSX1-201ENST00000382723 YARSP54577 528 aaKnown RBP28.92■■■□□ 2.22
MSX1-201ENST00000382723 LPIN1Q14693 890 aa28.92■■■□□ 2.22
MSX1-201ENST00000382723 FAM26DQ5JW98 314 aa28.92■■■□□ 2.22
MSX1-201ENST00000382723 HGSNATQ68CP4 663 aa28.92■■■□□ 2.22
MSX1-201ENST00000382723 EPN1Q9Y6I3 576 aaPredicted RBP28.92■■■□□ 2.22
MSX1-201ENST00000382723 GFPT2O94808 682 aa28.91■■■□□ 2.22
MSX1-201ENST00000382723 SERPING1P05155 500 aa28.91■■■□□ 2.22
MSX1-201ENST00000382723 EIF4A3P38919 411 aaKnown RBP28.91■■■□□ 2.22
MSX1-201ENST00000382723 CTCFP49711 727 aaPredicted RBP28.91■■■□□ 2.22
MSX1-201ENST00000382723 PAK2Q13177 524 aa28.91■■■□□ 2.22
MSX1-201ENST00000382723 SPOPLQ6IQ16 392 aa28.91■■■□□ 2.22
MSX1-201ENST00000382723 HELQQ8TDG4 1101 aa28.91■■■□□ 2.22
MSX1-201ENST00000382723 CCDC42Q96M95 316 aa28.91■■■□□ 2.22
MSX1-201ENST00000382723 C1orf112Q9NSG2 853 aa28.91■■■□□ 2.22
MSX1-201ENST00000382723 PADI3Q9ULW8 664 aa28.91■■■□□ 2.22
MSX1-201ENST00000382723 ZC3H11AO75152 810 aaKnown RBP eCLIP28.9■■■□□ 2.22
MSX1-201ENST00000382723 SOX5P35711 763 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 KLHL30Q0D2K2 578 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 TMEM130Q8N3G9 435 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 KREMEN1Q96MU8 473 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 CXCL16Q9H2A7 254 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 DEF6Q9H4E7 631 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 PPP2R2CQ9Y2T4 447 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 IPPQ9Y573 584 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 FOXN3O00409 490 aaPredicted RBP28.9■■■□□ 2.22
MSX1-201ENST00000382723 CAND2O75155 1236 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 RECQL4O94761 1208 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 NDUFA10O95299 355 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 SGPL1O95470 568 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 ATN1P54259 1190 aaPredicted RBP28.9■■■□□ 2.22
MSX1-201ENST00000382723 MFAP3P55082 362 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 TRPC3Q13507 836 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 TMEM132DQ14C87 1099 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 IRF2BP2Q7Z5L9 587 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 ACRBPQ8NEB7 543 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 RNF39Q9H2S5 420 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 ERVK-5Q9HDB9 667 aa28.9■■■□□ 2.22
MSX1-201ENST00000382723 FAM126BQ8IXS8 530 aa28.89■■■□□ 2.22
MSX1-201ENST00000382723 SNX27Q96L92 541 aa28.89■■■□□ 2.22
MSX1-201ENST00000382723 SEZ6LQ9BYH1 1024 aa28.89■■■□□ 2.22
MSX1-201ENST00000382723 CRISPLD2Q9H0B8 497 aa28.89■■■□□ 2.22
MSX1-201ENST00000382723 PARP2Q9UGN5 583 aa28.89■■■□□ 2.22
MSX1-201ENST00000382723 ADGRG1Q9Y653 693 aa28.89■■■□□ 2.22
MSX1-201ENST00000382723 KRT19P08727 400 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 CYLC1P35663 651 aaPredicted RBP28.88■■■□□ 2.21
MSX1-201ENST00000382723 MYL6P60660 151 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 CCDC170Q8IYT3 715 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 SMG8Q8ND04 991 aaKnown RBP28.88■■■□□ 2.21
MSX1-201ENST00000382723 KIF12Q96FN5 646 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 IMPG2Q9BZV3 1241 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 HAUS4Q9H6D7 363 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 CHST12Q9NRB3 414 aa28.88■■■□□ 2.21
MSX1-201ENST00000382723 SPTLC3Q9NUV7 552 aa28.88■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms