RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	IBA57	P47158	497 aa		0.7	□□□□□ -2.3
RKR1	YMR247C	TPN1	P53099	579 aa		0.7	□□□□□ -2.3
RKR1	YMR247C	GIM3	P53900	129 aa		0.7	□□□□□ -2.3
RKR1	YMR247C	BUD25	P85052	153 aa		0.7	□□□□□ -2.3
RKR1	YMR247C	YDR115W	Q04598	105 aa		0.7	□□□□□ -2.3
RKR1	YMR247C	YDR278C	Q05612	105 aa		0.7	□□□□□ -2.3
RKR1	YMR247C	STE23	Q06010	1027 aa		0.7	□□□□□ -2.3
RKR1	YMR247C	YPR195C	Q06594	109 aa		0.7	□□□□□ -2.3
RKR1	YMR247C	RPL9A	P05738	191 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	HIS3	P06633	220 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	MRP1	P10662	321 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	PUT4	P15380	627 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	RNA15	P25299	296 aa	Predicted RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	ERV1	P27882	189 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	IMP3	P32899	183 aa	Predicted RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	TAE1	P38340	232 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	YCH1	P42937	148 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	AGP3	P43548	558 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	TIS11	P47977	285 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	RPL9B	P51401	191 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	VPS60	Q03390	229 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	CAB5	Q03941	241 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	ATC1	Q04005	294 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	PML1	Q07930	204 aa	Predicted RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	APC9	Q12107	265 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	EMP46	Q12396	444 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	OM45	P16547	393 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	MRPL39	P36533	70 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	MRPL40	P36534	297 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	MRX3	P38172	270 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	RRF1	P38771	230 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	BDH1	P39714	382 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	ECO1	P43605	281 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	YAR1	P46683	200 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	LIA1	P47120	325 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	EMC2	P47133	292 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	SYF2	P53277	215 aa	Predicted RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	COS6	P53344	381 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	IGO1	P53897	168 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	SPP2	Q02521	185 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	SRL4	Q03085	281 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	AIM33	Q04516	312 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	YHC1	Q05900	231 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	0.69	□□□□□ -2.3	not detected
RKR1	YMR247C	PGC1	Q08959	321 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	YDL211C	Q12121	372 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	YRA1	Q12159	226 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	RFM1	Q12192	310 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	NFI1	Q12216	726 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	TDH2	P00358	332 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	DPM1	P14020	267 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	UGA1	P17649	471 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	COQ1	P18900	473 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	DBP3	P20447	523 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	MDH2	P22133	377 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	TFC1	P32367	649 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	UTH1	P36135	365 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	SRL3	P36167	246 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	VAB2	P40003	282 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	HEM14	P40012	539 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	YIL001W	P40560	513 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	RPL10	P41805	221 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	ERV25	P54837	211 aa	Known RBP	0.69	□□□□□ -2.3
RKR1	YMR247C	TAF10	Q12030	206 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	BTS1	Q12051	335 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	SLM3	Q12093	417 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	MCT1	Q12283	360 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	YAL063C-A	Q3E791	96 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	AI5_BETA	Q9ZZX0	354 aa		0.69	□□□□□ -2.3
RKR1	YMR247C	ADH1	P00330	348 aa	Known RBP	0.68	□□□□□ -2.3
RKR1	YMR247C	RPL31A	P0C2H8	113 aa	Known RBP	0.68	□□□□□ -2.3
RKR1	YMR247C	END3	P39013	349 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	COX15	P40086	486 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	CAX4	P53223	239 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	YGR168C	P53293	376 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	MNT4	P53745	580 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	ACT1	P60010	375 aa	Known RBP	0.68	□□□□□ -2.3
RKR1	YMR247C	PEX12	Q04370	399 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	YLR422W	Q06409	1932 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	RAD1	P06777	1100 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	RAD10	P06838	210 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	FBA1	P14540	359 aa	Known RBP	0.68	□□□□□ -2.3
RKR1	YMR247C	ATS1	P31386	333 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	CUE1	P38428	203 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	VTC1	P40046	129 aa	RIP-Chip data	0.68	□□□□□ -2.3	RIP-Chip
RKR1	YMR247C	YER135C	P40082	130 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	YJL118W	P47022	219 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	TAD2	P47058	250 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	MRH4	P53166	561 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	CDC123	Q05791	360 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	YOR292C	Q08743	309 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	FEX1	Q08913	375 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	FEX2	Q08991	375 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	GSP1	P32835	219 aa	Known RBP	0.68	□□□□□ -2.3
RKR1	YMR247C	GSP2	P32836	220 aa	Known RBP	0.68	□□□□□ -2.3
RKR1	YMR247C	CSG2	P35206	410 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	DBP7	P36120	742 aa	Known RBP	0.68	□□□□□ -2.3
RKR1	YMR247C	TCD1	P38756	429 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	PEP8	P40335	379 aa		0.68	□□□□□ -2.3
RKR1	YMR247C	ARC15	P40518	154 aa	RIP-Chip data	0.68	□□□□□ -2.3	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 52.3 ms