RNA–Protein interactions for RNA: YBR263W

SHM1, Transcript of Mitochondrial serine hydroxymethyltransferase, yeast

Gene SHM1, Length 1,473 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHM1	YBR263W	YJL055W	P47044	245 aa		4.87	□□□□□ -1.63
SHM1	YBR263W	LYS20	P48570	428 aa	Known RBP	4.87	□□□□□ -1.63
SHM1	YBR263W	SIP18	P50263	79 aa		4.87	□□□□□ -1.63
SHM1	YBR263W	IMO32	P53219	342 aa		4.87	□□□□□ -1.63
SHM1	YBR263W	SAM50	P53969	484 aa		4.87	□□□□□ -1.63
SHM1	YBR263W	FMP42	Q04991	504 aa		4.87	□□□□□ -1.63
SHM1	YBR263W	NMA1	Q06178	401 aa	Known RBP	4.87	□□□□□ -1.63
SHM1	YBR263W	TSR2	Q06672	205 aa	Known RBP	4.87	□□□□□ -1.63
SHM1	YBR263W	FIT3	Q08907	204 aa		4.87	□□□□□ -1.63
SHM1	YBR263W	LYS21	Q12122	440 aa	Known RBP	4.87	□□□□□ -1.63
SHM1	YBR263W	MED4	Q12343	284 aa		4.87	□□□□□ -1.63
SHM1	YBR263W	YLR099W-A	Q3E798	87 aa		4.87	□□□□□ -1.63
SHM1	YBR263W	RPL35A	P0CX84	120 aa	Known RBP	4.86	□□□□□ -1.63
SHM1	YBR263W	RPL35B	P0CX85	120 aa	Known RBP	4.86	□□□□□ -1.63
SHM1	YBR263W	TAL1	P15019	335 aa	Known RBP	4.86	□□□□□ -1.63
SHM1	YBR263W	MTR2	P34232	184 aa	Known RBP	4.86	□□□□□ -1.63
SHM1	YBR263W	CLG1	P35190	452 aa		4.86	□□□□□ -1.63
SHM1	YBR263W	GPX2	P38143	162 aa		4.86	□□□□□ -1.63
SHM1	YBR263W	YBR242W	P38331	238 aa		4.86	□□□□□ -1.63
SHM1	YBR263W	YMR144W	P40214	342 aa	Known RBP	4.86	□□□□□ -1.63
SHM1	YBR263W	YJR120W	P47157	116 aa		4.86	□□□□□ -1.63
SHM1	YBR263W	PMT5	P52867	743 aa		4.86	□□□□□ -1.63
SHM1	YBR263W	YGL204C	P53089	101 aa		4.86	□□□□□ -1.63
SHM1	YBR263W	ACS1	Q01574	713 aa		4.86	□□□□□ -1.63
SHM1	YBR263W	MCM21	Q06675	368 aa		4.86	□□□□□ -1.63
SHM1	YBR263W	MES1	P00958	751 aa	Known RBP	4.85	□□□□□ -1.63
SHM1	YBR263W	HIS3	P06633	220 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	VMA8	P32610	256 aa	Known RBP	4.85	□□□□□ -1.63
SHM1	YBR263W	PAU2	P32612	120 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	MTH1	P35198	433 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	SYG1	P40528	902 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	CTK2	P46962	323 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	YIP4	P53093	235 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	MTM1	P53320	366 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	YLR152C	P54072	576 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	RSM23	Q01163	450 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	DIG2	Q03373	323 aa	Known RBP	4.85	□□□□□ -1.63
SHM1	YBR263W	MSS11	Q03825	758 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	YDR391C	Q04170	232 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	MGR3	Q04472	501 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	LUC7	Q07508	261 aa	Predicted RBP	4.85	□□□□□ -1.63
SHM1	YBR263W	RNH203	Q12338	110 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	IES3	Q12345	250 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	ISA2	Q12425	185 aa		4.85	□□□□□ -1.63
SHM1	YBR263W	ADK1	P07170	222 aa	Known RBP	4.84	□□□□□ -1.63
SHM1	YBR263W	DSF1	P0CX08	502 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	YNR073C	P0CX09	502 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	PET122	P10355	254 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	DPB2	P24482	689 aa	Predicted RBP	4.84	□□□□□ -1.63
SHM1	YBR263W	ERG24	P32462	438 aa	Known RBP	4.84	□□□□□ -1.63
SHM1	YBR263W	SFK1	P35735	353 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	APL3	P38065	1025 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	YBR220C	P38318	560 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	RTC3	P38804	111 aa	Predicted RBP	4.84	□□□□□ -1.63
SHM1	YBR263W	PCL7	P40186	285 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	JLP2	P40206	208 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	ATF1	P40353	525 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	DLS1	P40366	167 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	CIN2	P46670	268 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	PHB2	P50085	310 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	YIP5	P53108	310 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	CPR8	P53728	308 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	AAH1	P53909	347 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	FYV6	P53913	173 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	HHT1	P61830	136 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	ASR1	Q06834	288 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	SSK1	Q07084	712 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	FRE3	Q08905	711 aa		4.84	□□□□□ -1.63
SHM1	YBR263W	TIR4	Q12218	487 aa	Predicted RBP	4.84	□□□□□ -1.63
SHM1	YBR263W	QCR7	P00128	127 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
SHM1	YBR263W	TRP4	P07285	380 aa	Predicted RBP	4.83	□□□□□ -1.64
SHM1	YBR263W	SGA1	P08019	549 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	NAM2	P11325	894 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	CLB6	P32943	380 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	ZRT3	P34240	503 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	CPR5	P35176	225 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	ATP3	P38077	311 aa	Known RBP	4.83	□□□□□ -1.64
SHM1	YBR263W	SSH1	P38353	490 aa	Known RBP	4.83	□□□□□ -1.64
SHM1	YBR263W	PIG2	P40187	538 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	QRI1	P43123	477 aa	Known RBP	4.83	□□□□□ -1.64
SHM1	YBR263W	DOC1	P53068	250 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	YPL077C	Q02831	240 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	GPN3	Q06543	272 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	MRPL35	Q06678	367 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	HEM25	Q07534	307 aa		4.83	□□□□□ -1.64
SHM1	YBR263W	NCE102	Q12207	173 aa	RIP-Chip data	4.83	□□□□□ -1.64	not detected
SHM1	YBR263W	GCN4	P03069	281 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	REP1	P03871	373 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	RPS18A	P0CX55	146 aa	Known RBP	4.82	□□□□□ -1.64
SHM1	YBR263W	RPS18B	P0CX56	146 aa	Predicted RBP	4.82	□□□□□ -1.64
SHM1	YBR263W	MATALPHA1	P0CY06	175 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	HMLALPHA1	P0CY07	175 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	PDA1	P16387	420 aa	Known RBP	4.82	□□□□□ -1.64
SHM1	YBR263W	GLC7	P32598	312 aa	Known RBP	4.82	□□□□□ -1.64
SHM1	YBR263W	SEC66	P33754	206 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	UTP11	P34247	250 aa	Predicted RBP	4.82	□□□□□ -1.64
SHM1	YBR263W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
SHM1	YBR263W	POP7	P38291	140 aa		4.82	□□□□□ -1.64
SHM1	YBR263W	PRS3	P38689	320 aa	Known RBP	4.82	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 38.3 ms