RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 ZFP37Q9Y6Q3 630 aaPredicted RBP14.32□□□□□ -0.12
SF3B3-202ENST00000562722 DMDP11532 3685 aa14.31□□□□□ -0.12
SF3B3-202ENST00000562722 DCNP07585 359 aaKnown RBP14.31□□□□□ -0.12
SF3B3-202ENST00000562722 HNRNPA1P09651 372 aaKnown RBP eCLIP14.31□□□□□ -0.12
SF3B3-202ENST00000562722 CYP11B2P19099 503 aa14.31□□□□□ -0.12
SF3B3-202ENST00000562722 RPA1P27694 616 aa14.31□□□□□ -0.12
SF3B3-202ENST00000562722 CCT6AP40227 531 aaKnown RBP14.31□□□□□ -0.12
SF3B3-202ENST00000562722 DCAF4L1Q3SXM0 396 aa14.31□□□□□ -0.12
SF3B3-202ENST00000562722 GLRA4Q5JXX5 417 aa14.31□□□□□ -0.12
SF3B3-202ENST00000562722 EEF1DP3Q658K8 133 aa14.31□□□□□ -0.12
SF3B3-202ENST00000562722 DCLRE1AQ6PJP8 1040 aa14.31□□□□□ -0.12
SF3B3-202ENST00000562722 APBB1IPQ7Z5R6 666 aaPredicted RBP14.31□□□□□ -0.12
SF3B3-202ENST00000562722 LNX1Q8TBB1 728 aaPredicted RBP14.31□□□□□ -0.12
SF3B3-202ENST00000562722 SLC7A14Q8TBB6 771 aa14.31□□□□□ -0.12
SF3B3-202ENST00000562722 CXCL16Q9H2A7 254 aa14.31□□□□□ -0.12
SF3B3-202ENST00000562722 CDH7Q9ULB5 785 aa14.31□□□□□ -0.12
SF3B3-202ENST00000562722 SIT1Q9Y3P8 196 aa14.31□□□□□ -0.12
SF3B3-202ENST00000562722 ANHXE9PGG2 379 aa14.3□□□□□ -0.12
SF3B3-202ENST00000562722 EIF5BO60841 1220 aaKnown RBP14.3□□□□□ -0.12
SF3B3-202ENST00000562722 B3GAT3O94766 335 aa14.3□□□□□ -0.12
SF3B3-202ENST00000562722 PAPLNO95428 1278 aa14.3□□□□□ -0.12
SF3B3-202ENST00000562722 OR1D2P34982 312 aa14.3□□□□□ -0.12
SF3B3-202ENST00000562722 TTC38Q5R3I4 469 aa14.3□□□□□ -0.12
SF3B3-202ENST00000562722 PARM1Q6UWI2 310 aa14.3□□□□□ -0.12
SF3B3-202ENST00000562722 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.3□□□□□ -0.12
SF3B3-202ENST00000562722 CCDC83Q8IWF9 413 aa14.3□□□□□ -0.12
SF3B3-202ENST00000562722 CCDC113Q9H0I3 377 aa14.3□□□□□ -0.12
SF3B3-202ENST00000562722 POLD4Q9HCU8 107 aa14.3□□□□□ -0.12
SF3B3-202ENST00000562722 SLC2A4RGQ9NR83 387 aa14.3□□□□□ -0.12
SF3B3-202ENST00000562722 ADAM12O43184 909 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 EFNA5P52803 228 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 YARSP54577 528 aaKnown RBP14.29□□□□□ -0.12
SF3B3-202ENST00000562722 ORC2Q13416 577 aaPredicted RBP14.29□□□□□ -0.12
SF3B3-202ENST00000562722 NAB2Q15742 525 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 AXDND1Q5T1B0 1012 aaPredicted RBP14.29□□□□□ -0.12
SF3B3-202ENST00000562722 ATF7IP2Q5U623 682 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 PHLDB3Q6NSJ2 640 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 MTSS1LQ765P7 747 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 KIFAP3Q92845 792 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 FGF13Q92913 245 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 FGF14Q92915 247 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 SHDQ96IW2 340 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 HINFPQ9BQA5 517 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 RPP25Q9BUL9 199 aaKnown RBP14.29□□□□□ -0.12
SF3B3-202ENST00000562722 FOXQ1Q9C009 403 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 BHMT2Q9H2M3 363 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 NOL7Q9UMY1 257 aaKnown RBP14.29□□□□□ -0.12
SF3B3-202ENST00000562722 R4GN57 208 aa14.29□□□□□ -0.12
SF3B3-202ENST00000562722 CCDC169A6NNP5 214 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 K7ERI5 159 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 TRAPPC3O43617 180 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 LMNAP02545 664 aaKnown RBP14.28□□□□□ -0.12
SF3B3-202ENST00000562722 EDN1P05305 212 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 HOXA9P31269 272 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 CLCNKBP51801 687 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 GPC5P78333 572 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 FOXK2Q01167 660 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 ST3GAL1Q11201 340 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 FAM184AQ8NB25 1140 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 ITFG1Q8TB96 612 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 UROC1Q96N76 676 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 FOXP1Q9H334 677 aaPredicted RBP14.28□□□□□ -0.12
SF3B3-202ENST00000562722 HCFC1R1Q9NWW0 138 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 LRWD1Q9UFC0 647 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 LIMCH1Q9UPQ0 1083 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 KIAA1024Q9UPX6 916 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 CDY1Q9Y6F8 540 aa14.28□□□□□ -0.12
SF3B3-202ENST00000562722 I3L4J1 428 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 FGFR3P22607 806 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 TKTP29401 623 aaKnown RBP14.27□□□□□ -0.13
SF3B3-202ENST00000562722 ID4P47928 161 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 RBM25P49756 843 aaKnown RBP14.27□□□□□ -0.13
SF3B3-202ENST00000562722 OSTNP61366 133 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 SNW1Q13573 536 aaKnown RBP14.27□□□□□ -0.13
SF3B3-202ENST00000562722 RAB33AQ14088 237 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 ZNF568Q3ZCX4 644 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 PABPC1LQ4VXU2 614 aaKnown RBP14.27□□□□□ -0.13
SF3B3-202ENST00000562722 NT5DC1Q5TFE4 455 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 ZC3H14Q6PJT7 736 aaKnown RBP14.27□□□□□ -0.13
SF3B3-202ENST00000562722 PJA1Q8NG27 643 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 SNX29Q8TEQ0 813 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 ING5Q8WYH8 240 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 PPP1R10Q96QC0 940 aaKnown RBP14.27□□□□□ -0.13
SF3B3-202ENST00000562722 KXD1Q9BQD3 176 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 CCDC94Q9BW85 323 aaPredicted RBP14.27□□□□□ -0.13
SF3B3-202ENST00000562722 RAB34Q9BZG1 259 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 GOLGA2P5Q9HBQ8 144 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 TOPORSQ9NS56 1045 aaPredicted RBP14.27□□□□□ -0.13
SF3B3-202ENST00000562722 DDX19AQ9NUU7 478 aaKnown RBP14.27□□□□□ -0.13
SF3B3-202ENST00000562722 MTRRQ9UBK8 725 aa14.27□□□□□ -0.13
SF3B3-202ENST00000562722 PTPRZ1P23471 2315 aaPredicted RBP14.27□□□□□ -0.13
SF3B3-202ENST00000562722 MTCL1Q9Y4B5 1905 aaKnown RBP14.26□□□□□ -0.13
SF3B3-202ENST00000562722 TMEM189-UBE2V1I3L0A0 370 aa14.26□□□□□ -0.13
SF3B3-202ENST00000562722 MUTP22033 750 aa14.26□□□□□ -0.13
SF3B3-202ENST00000562722 BRCC3P46736 316 aa14.26□□□□□ -0.13
SF3B3-202ENST00000562722 FXR2P51116 673 aaKnown RBP eCLIP14.26□□□□□ -0.132e-13■■■■□ 24.7
SF3B3-202ENST00000562722 PEX3P56589 373 aa14.26□□□□□ -0.13
SF3B3-202ENST00000562722 DMP1Q13316 513 aaPredicted RBP14.26□□□□□ -0.13
SF3B3-202ENST00000562722 NBR1Q14596 966 aa14.26□□□□□ -0.13
SF3B3-202ENST00000562722 UBXN2BQ14CS0 331 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms