RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C RPL24BP24000 155 aaKnown RBP1.74□□□□□ -2.13
UBP11YKR098C PBN1P25580 416 aa1.74□□□□□ -2.13
UBP11YKR098C HMT1P38074 348 aa1.74□□□□□ -2.13
UBP11YKR098C YHL044WP38727 235 aa1.74□□□□□ -2.13
UBP11YKR098C GOS1P38736 223 aa1.74□□□□□ -2.13
UBP11YKR098C FRT2P39734 528 aa1.74□□□□□ -2.13
UBP11YKR098C SYS1P41544 203 aa1.74□□□□□ -2.13
UBP11YKR098C COS4P43542 379 aa1.74□□□□□ -2.13
UBP11YKR098C YFL012WP43580 148 aa1.74□□□□□ -2.13
UBP11YKR098C SMD1Q02260 146 aaPredicted RBP1.74□□□□□ -2.13
UBP11YKR098C YMR166CQ03829 368 aa1.74□□□□□ -2.13
UBP11YKR098C DCR2Q05924 578 aa1.74□□□□□ -2.13
UBP11YKR098C YPR098CQ06089 161 aa1.74□□□□□ -2.13
UBP11YKR098C RFM1Q12192 310 aa1.74□□□□□ -2.13
UBP11YKR098C THP2O13539 261 aaKnown RBP1.73□□□□□ -2.13
UBP11YKR098C FUS3P16892 353 aaKnown RBP1.73□□□□□ -2.13
UBP11YKR098C YCR102CP25608 368 aa1.73□□□□□ -2.13
UBP11YKR098C VMA6P32366 345 aaKnown RBP1.73□□□□□ -2.13
UBP11YKR098C VPS21P36017 210 aaKnown RBP1.73□□□□□ -2.13
UBP11YKR098C MRPS9P38120 278 aa1.73□□□□□ -2.13
UBP11YKR098C PHO89P38361 574 aa1.73□□□□□ -2.13
UBP11YKR098C RTC3P38804 111 aaPredicted RBP1.73□□□□□ -2.13
UBP11YKR098C GIS2P53849 153 aaKnown RBP RIP-Chip data1.73□□□□□ -2.13not detected
UBP11YKR098C GTO3Q04806 366 aa1.73□□□□□ -2.13
UBP11YKR098C PEX10Q05568 337 aa1.73□□□□□ -2.13
UBP11YKR098C RRS1Q08746 203 aaKnown RBP1.73□□□□□ -2.13
UBP11YKR098C ATG5Q12380 294 aa1.73□□□□□ -2.13
UBP11YKR098C YKR104WP0CE69 306 aa1.72□□□□□ -2.13
UBP11YKR098C CPT1P17898 393 aa1.72□□□□□ -2.13
UBP11YKR098C MRPL25P23369 157 aa1.72□□□□□ -2.13
UBP11YKR098C CSG2P35206 410 aa1.72□□□□□ -2.13
UBP11YKR098C YKL075CP36083 450 aa1.72□□□□□ -2.13
UBP11YKR098C YBL081WP38180 368 aaKnown RBP1.72□□□□□ -2.13
UBP11YKR098C ARN2P38724 620 aa1.72□□□□□ -2.13
UBP11YKR098C SNZ3P43545 298 aa1.72□□□□□ -2.13
UBP11YKR098C SWT21P53873 357 aaPredicted RBP1.72□□□□□ -2.13
UBP11YKR098C AAH1P53909 347 aa1.72□□□□□ -2.13
UBP11YKR098C OSH6Q02201 448 aa1.72□□□□□ -2.13
UBP11YKR098C MRX8Q05473 314 aa1.72□□□□□ -2.13
UBP11YKR098C DXO1Q06349 442 aa1.72□□□□□ -2.13
UBP11YKR098C ATG17Q06410 417 aa1.72□□□□□ -2.13
UBP11YKR098C SNU23Q12368 194 aaPredicted RBP1.72□□□□□ -2.13
UBP11YKR098C JIP3O13555 125 aa1.72□□□□□ -2.13
UBP11YKR098C CDC36P06100 191 aaPredicted RBP1.72□□□□□ -2.13
UBP11YKR098C NHP6BP11633 99 aaKnown RBP1.72□□□□□ -2.13
UBP11YKR098C PRE7P23724 241 aaKnown RBP1.72□□□□□ -2.13
UBP11YKR098C ERG2P32352 222 aa1.72□□□□□ -2.13
UBP11YKR098C RIB1P38066 345 aa1.72□□□□□ -2.13
UBP11YKR098C FZO1P38297 855 aa1.72□□□□□ -2.13
UBP11YKR098C MIC12P38341 106 aa1.72□□□□□ -2.13
UBP11YKR098C URA8P38627 578 aaPredicted RBP1.72□□□□□ -2.13
UBP11YKR098C CPR7P47103 393 aa1.72□□□□□ -2.13
UBP11YKR098C ZRG17P53735 605 aa1.72□□□□□ -2.13
UBP11YKR098C NNT1Q05874 261 aa1.72□□□□□ -2.13
UBP11YKR098C YPL264CQ08980 353 aa1.72□□□□□ -2.13
UBP11YKR098C SIP3P38717 1229 aa1.71□□□□□ -2.14
UBP11YKR098C YHI9P38765 294 aa1.71□□□□□ -2.14
UBP11YKR098C TRR2P38816 342 aa1.71□□□□□ -2.14
UBP11YKR098C SLX9P53251 210 aaPredicted RBP1.71□□□□□ -2.14
UBP11YKR098C SNZ2P53824 298 aa1.71□□□□□ -2.14
UBP11YKR098C SPG4Q04438 115 aa1.71□□□□□ -2.14
UBP11YKR098C SEY1Q99287 776 aa1.71□□□□□ -2.14
UBP11YKR098C CUP2P15315 225 aa1.71□□□□□ -2.14
UBP11YKR098C COQ1P18900 473 aa1.71□□□□□ -2.14
UBP11YKR098C YMR31P19955 123 aa1.71□□□□□ -2.14
UBP11YKR098C MID2P36027 376 aa1.71□□□□□ -2.14
UBP11YKR098C MAL32P38158 584 aa1.71□□□□□ -2.14
UBP11YKR098C FLC3P53121 802 aa1.71□□□□□ -2.14
UBP11YKR098C MAL12P53341 584 aa1.71□□□□□ -2.14
UBP11YKR098C HST4P53688 370 aa1.71□□□□□ -2.14
UBP11YKR098C YPL039WQ03080 316 aa1.71□□□□□ -2.14
UBP11YKR098C YPR147CQ06522 304 aaKnown RBP1.71□□□□□ -2.14
UBP11YKR098C YBL112CQ3E7Y4 105 aa1.71□□□□□ -2.14
UBP11YKR098C NCB2Q92317 146 aa1.71□□□□□ -2.14
UBP11YKR098C CDC33P07260 213 aaKnown RBP1.7□□□□□ -2.14
UBP11YKR098C DPB2P24482 689 aaPredicted RBP1.7□□□□□ -2.14
UBP11YKR098C NTF2P33331 125 aaKnown RBP1.7□□□□□ -2.14
UBP11YKR098C SGE1P33335 543 aa1.7□□□□□ -2.14
UBP11YKR098C PRP18P33411 251 aaPredicted RBP1.7□□□□□ -2.14
UBP11YKR098C DRE2P36152 348 aa1.7□□□□□ -2.14
UBP11YKR098C CUE1P38428 203 aa1.7□□□□□ -2.14
UBP11YKR098C ERG28P40030 148 aa1.7□□□□□ -2.14
UBP11YKR098C YRB1P41920 201 aaKnown RBP1.7□□□□□ -2.14
UBP11YKR098C RPE1P46969 238 aa1.7□□□□□ -2.14
UBP11YKR098C MRH4P53166 561 aa1.7□□□□□ -2.14
UBP11YKR098C YGL034CP53186 121 aa1.7□□□□□ -2.14
UBP11YKR098C CGR1P53188 120 aa1.7□□□□□ -2.14
UBP11YKR098C RHO3Q00245 231 aaKnown RBP1.7□□□□□ -2.14
UBP11YKR098C TVP15Q03860 143 aa1.7□□□□□ -2.14
UBP11YKR098C BNA7Q04066 261 aa1.7□□□□□ -2.14
UBP11YKR098C ECM11Q04110 302 aa1.7□□□□□ -2.14
UBP11YKR098C SEI1Q06058 285 aa1.7□□□□□ -2.14
UBP11YKR098C YKL183C-AQ3E765 70 aa1.7□□□□□ -2.14
UBP11YKR098C YBR121C-AP0C5L4 52 aa1.69□□□□□ -2.14
UBP11YKR098C YAK1P14680 807 aa1.69□□□□□ -2.14
UBP11YKR098C CDC10P25342 322 aaKnown RBP1.69□□□□□ -2.14
UBP11YKR098C GDH2P33327 1092 aaKnown RBP1.69□□□□□ -2.14
UBP11YKR098C CBT1P36038 271 aaPredicted RBP1.69□□□□□ -2.14
UBP11YKR098C TRM7P38238 310 aaKnown RBP1.69□□□□□ -2.14
UBP11YKR098C YHR127WP38833 243 aaKnown RBP1.69□□□□□ -2.14
Retrieved 100 of 5,963 RNA–protein pairs in 85.3 ms