RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	YPR053C	Q6Q5F3	151 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	QCR2	P07257	368 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	MTF1	P14908	341 aa	Known RBP	4.79	□□□□□ -1.64
NUP1	YOR098C	MUD1	P32605	298 aa	Known RBP	4.79	□□□□□ -1.64
NUP1	YOR098C	TSA1	P34760	196 aa	Known RBP	4.79	□□□□□ -1.64
NUP1	YOR098C	LEU5	P38702	357 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	PAC2	P39937	518 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	BMT5	P40493	336 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	WWM1	P43582	211 aa	Known RBP	4.79	□□□□□ -1.64
NUP1	YOR098C	LSM1	P47017	172 aa	Known RBP	4.79	□□□□□ -1.64
NUP1	YOR098C	YJR149W	P47177	404 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	YNL140C	P53910	189 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	RPL22B	P56628	122 aa	Known RBP	4.79	□□□□□ -1.64
NUP1	YOR098C	BNA5	Q05979	453 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	CTR3	Q06686	241 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	YOL073C	Q08232	322 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	IZH4	Q99393	312 aa		4.79	□□□□□ -1.64
NUP1	YOR098C	RAD10	P06838	210 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	YPC1	P38298	316 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	ASG7	P46993	209 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	YJR030C	P47101	745 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	ALG13	P53178	202 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	ARC18	Q05933	178 aa	Known RBP	4.78	□□□□□ -1.64
NUP1	YOR098C	AIM39	Q08223	395 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	YDL009C	Q12210	107 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	YCR100C	P25606	316 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	QRI5	P32344	111 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	TOD6	P34219	525 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	RIB5	P38145	238 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	CHK1	P38147	527 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	YAT2	P40017	923 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	YDC1	Q02896	317 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	PEX12	Q04370	399 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	FAR10	Q06001	478 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	YOR342C	Q12182	319 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	JLP1	Q12358	412 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	RPN13	O13563	156 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	CAP2	P13517	287 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	EXG1	P23776	448 aa	Known RBP	4.78	□□□□□ -1.64
NUP1	YOR098C	GIT1	P25346	518 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	TIR2	P33890	251 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	YOX1	P34161	385 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	POP4	P38336	279 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	YIA6	P40556	373 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	YJR012C	P47087	207 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	YET3	Q07451	203 aa		4.78	□□□□□ -1.64
NUP1	YOR098C	RDL1	Q12305	139 aa	Known RBP	4.78	□□□□□ -1.64
NUP1	YOR098C	YAR066W	P0CX18	203 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	YHR214W	P0CX19	203 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	CPR3	P25719	182 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	YMC1	P32331	307 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.77	□□□□□ -1.65	not detected
NUP1	YOR098C	PHD1	P36093	366 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	ETR1	P38071	380 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	HPM1	P40481	377 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	SNX41	Q04053	625 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	TPT1	Q12272	230 aa	Known RBP	4.77	□□□□□ -1.65
NUP1	YOR098C	DCN1	Q12395	269 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	REP1	P03871	373 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	HSP30	P25619	332 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	HOM6	P31116	359 aa	Known RBP	4.77	□□□□□ -1.65
NUP1	YOR098C	IRC7	P43623	340 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	SWP1	Q02795	286 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	YMR206W	Q03695	313 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	ECM11	Q04110	302 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	THI20	Q08224	551 aa		4.77	□□□□□ -1.65
NUP1	YOR098C	RPL28	P02406	149 aa	Known RBP	4.76	□□□□□ -1.65
NUP1	YOR098C	RPL20A	P0CX23	172 aa	Known RBP	4.76	□□□□□ -1.65
NUP1	YOR098C	RPL20B	P0CX24	172 aa	Predicted RBP	4.76	□□□□□ -1.65
NUP1	YOR098C	ECM8	P38246	354 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	FCY21	P40039	528 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	YJR054W	P47114	497 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	YJR141W	P47172	347 aa	Predicted RBP	4.76	□□□□□ -1.65
NUP1	YOR098C	MIC26	P50087	233 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	GND2	P53319	492 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	ARK1	P53974	638 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	TAZ1	Q06510	381 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	WTM1	Q12363	437 aa	Known RBP	4.76	□□□□□ -1.65
NUP1	YOR098C	NOT5	Q12514	560 aa	Predicted RBP	4.76	□□□□□ -1.65
NUP1	YOR098C	PUT1	P09368	476 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	AMD1	P15274	810 aa	Known RBP	4.76	□□□□□ -1.65
NUP1	YOR098C	NTF2	P33331	125 aa	Known RBP	4.76	□□□□□ -1.65
NUP1	YOR098C	VAB2	P40003	282 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	PRP38	Q00723	242 aa	Predicted RBP	4.76	□□□□□ -1.65
NUP1	YOR098C	SNO1	Q03144	224 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	YDL114W	Q07530	308 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	ASP3-2	P0CX77	362 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	ASP3-3	P0CX78	362 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	ASP3-4	P0CX79	362 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	ASP3-1	P0CZ17	362 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	SNF4	P12904	322 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	STF2	P16965	84 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	RPL16B	P26785	198 aa	Known RBP	4.76	□□□□□ -1.65
NUP1	YOR098C	TIP1	P27654	210 aa	Predicted RBP	4.76	□□□□□ -1.65
NUP1	YOR098C	YBR096W	P38256	230 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	ATG12	P38316	186 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	YBR285W	P38354	144 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	SEO1	P39709	593 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	VRG4	P40107	337 aa		4.76	□□□□□ -1.65
NUP1	YOR098C	AGE2	P40529	298 aa		4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 49.5 ms