RNA–Protein interactions for RNA: YMR107W

SPG4, Transcript of Protein required for high temperature survival during stationary phase, yeast

Gene SPG4, Length 348 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPG4	YMR107W	CDC28	P00546	298 aa	Known RBP	4.82	□□□□□ -1.64
SPG4	YMR107W	CDC7	P06243	507 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	MET3	P08536	511 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	SPS4	P09937	338 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	YOL162W	P0CF19	215 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	MRPL8	P22353	238 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	TIP1	P27654	210 aa	Predicted RBP	4.82	□□□□□ -1.64
SPG4	YMR107W	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
SPG4	YMR107W	HXT4	P32467	576 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	AGA2	P32781	87 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	COS9	P36034	407 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	POA1	P38218	177 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	URA8	P38627	578 aa	Predicted RBP	4.82	□□□□□ -1.64
SPG4	YMR107W	PEX28	P38848	579 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	AXL2	P38928	823 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	PRP39	P39682	629 aa	Known RBP	4.82	□□□□□ -1.64
SPG4	YMR107W	PZF1	P39933	429 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	SPC25	P40014	221 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	YER188W	P40103	239 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	FLX1	P40464	311 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	EMC5	P40540	141 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	OTU1	P43558	301 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	YFR020W	P43600	232 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	NIF3	P53081	288 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	VHT1	P53241	593 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	RTS3	P53289	263 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	MPA43	P53583	542 aa	Predicted RBP	4.82	□□□□□ -1.64
SPG4	YMR107W	HCH1	P53834	153 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	CWC21	Q03375	135 aa	Known RBP	4.82	□□□□□ -1.64
SPG4	YMR107W	HOF1	Q05080	669 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	SYM1	Q06563	197 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	TRM13	Q12383	476 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	AHC1	Q12433	566 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	AIM45	Q12480	344 aa	Known RBP	4.82	□□□□□ -1.64
SPG4	YMR107W	YPR014C	Q6B0W2	109 aa		4.82	□□□□□ -1.64
SPG4	YMR107W	GDH1	P07262	454 aa	Known RBP	4.81	□□□□□ -1.64
SPG4	YMR107W	CHO1	P08456	276 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	UBI4	P0CG63	381 aa	Known RBP	4.81	□□□□□ -1.64
SPG4	YMR107W	RPL40A	P0CH08	128 aa	Known RBP	4.81	□□□□□ -1.64
SPG4	YMR107W	RPL40B	P0CH09	128 aa	Known RBP	4.81	□□□□□ -1.64
SPG4	YMR107W	SEC12	P11655	471 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	CKA1	P15790	372 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	SEC59	P20048	519 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	RBK1	P25332	333 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	CPR4	P25334	318 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	PET18	P25362	215 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	VMA3	P25515	160 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	CNE1	P27825	502 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	IDH2	P28241	369 aa	Known RBP	4.81	□□□□□ -1.64
SPG4	YMR107W	DEG1	P31115	442 aa	Known RBP	4.81	□□□□□ -1.64
SPG4	YMR107W	SFA1	P32771	386 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	MRPL15	P36523	253 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	FAU1	P40099	211 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	IDP2	P41939	412 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	YJR012C	P47087	207 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	NUP57	P48837	541 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	SKP1	P52286	194 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	YGL114W	P53134	725 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	CTL1	Q03220	320 aa	Known RBP	4.81	□□□□□ -1.64
SPG4	YMR107W	SHH3	Q04487	196 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	AVO2	Q04749	426 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	YOL073C	Q08232	322 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	RTK1	Q12100	620 aa	Predicted RBP	4.81	□□□□□ -1.64
SPG4	YMR107W	TMA17	Q12513	150 aa		4.81	□□□□□ -1.64
SPG4	YMR107W	TDH2	P00358	332 aa	Known RBP	4.8	□□□□□ -1.64
SPG4	YMR107W	TPI1	P00942	248 aa	Known RBP	4.8	□□□□□ -1.64
SPG4	YMR107W	ADK1	P07170	222 aa	Known RBP	4.8	□□□□□ -1.64
SPG4	YMR107W	RPL31A	P0C2H8	113 aa	Known RBP	4.8	□□□□□ -1.64
SPG4	YMR107W	RPL31B	P0C2H9	113 aa	Known RBP	4.8	□□□□□ -1.64
SPG4	YMR107W	SCH9	P11792	824 aa	Known RBP	4.8	□□□□□ -1.64
SPG4	YMR107W	FUN14	P18411	198 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	SEC62	P21825	274 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	MRS4	P23500	304 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	NFS1	P25374	497 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	MIG1	P27705	504 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	EHD3	P28817	500 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	FMT1	P32785	401 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	SKN1	P33336	771 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	CBP4	P37267	147 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	MAL32	P38158	584 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	CHS7	P38843	316 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	YER010C	P40011	234 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	ICE2	P40499	491 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	OST3	P48439	350 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	YGL204C	P53089	101 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	MAL12	P53341	584 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	FIT1	Q04433	528 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	YMR074C	Q04773	145 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	YFT2	Q06676	274 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	HEM25	Q07534	307 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	RRP42	Q12277	265 aa	Predicted RBP	4.8	□□□□□ -1.64
SPG4	YMR107W	YIL134C-A	Q45U18	67 aa		4.8	□□□□□ -1.64
SPG4	YMR107W	TRP4	P07285	380 aa	Predicted RBP	4.79	□□□□□ -1.64
SPG4	YMR107W	SPO7	P18410	259 aa		4.79	□□□□□ -1.64
SPG4	YMR107W	HNM1	P19807	563 aa		4.79	□□□□□ -1.64
SPG4	YMR107W	PRO1	P32264	428 aa		4.79	□□□□□ -1.64
SPG4	YMR107W	POP8	P38208	133 aa		4.79	□□□□□ -1.64
SPG4	YMR107W	SHE3	P38272	425 aa	Known RBP	4.79	□□□□□ -1.64
SPG4	YMR107W	GGC1	P38988	300 aa		4.79	□□□□□ -1.64
SPG4	YMR107W	PHS1	P40857	217 aa		4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 73.8 ms