RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C EBS1Q03466 884 aaKnown RBP1.78□□□□□ -2.12
UBP11YKR098C UTP15Q04305 513 aaKnown RBP1.78□□□□□ -2.12
UBP11YKR098C KRE28Q04431 385 aa1.78□□□□□ -2.12
UBP11YKR098C CSM4Q08955 156 aa1.78□□□□□ -2.12
UBP11YKR098C DFM1Q12743 341 aaKnown RBP1.78□□□□□ -2.12
UBP11YKR098C PSK1P31374 1356 aa1.78□□□□□ -2.12
UBP11YKR098C STH1P32597 1359 aa1.78□□□□□ -2.12
UBP11YKR098C ARG80P07249 177 aa1.78□□□□□ -2.13
UBP11YKR098C REV1P12689 985 aa1.78□□□□□ -2.13
UBP11YKR098C RPB9P27999 122 aa1.78□□□□□ -2.13
UBP11YKR098C IMP1P28627 190 aa1.78□□□□□ -2.13
UBP11YKR098C SRB4P32569 687 aa1.78□□□□□ -2.13
UBP11YKR098C ALK2P32789 676 aaPredicted RBP1.78□□□□□ -2.13
UBP11YKR098C AIM29P36154 155 aa1.78□□□□□ -2.13
UBP11YKR098C OTU1P43558 301 aa1.78□□□□□ -2.13
UBP11YKR098C MIC19P43594 170 aa1.78□□□□□ -2.13
UBP11YKR098C YDR209CQ03480 137 aa1.78□□□□□ -2.13
UBP11YKR098C TIR4Q12218 487 aaPredicted RBP1.78□□□□□ -2.13
UBP11YKR098C SNF8Q12483 233 aa1.78□□□□□ -2.13
UBP11YKR098C TCP1P12612 559 aaKnown RBP1.77□□□□□ -2.13
UBP11YKR098C RPB4P20433 221 aaPredicted RBP1.77□□□□□ -2.13
UBP11YKR098C RPO26P20435 155 aa1.77□□□□□ -2.13
UBP11YKR098C RNA15P25299 296 aaPredicted RBP1.77□□□□□ -2.13
UBP11YKR098C EHD3P28817 500 aa1.77□□□□□ -2.13
UBP11YKR098C HOM6P31116 359 aaKnown RBP1.77□□□□□ -2.13
UBP11YKR098C TPS2P31688 896 aaKnown RBP1.77□□□□□ -2.13
UBP11YKR098C YKT6P36015 200 aaKnown RBP1.77□□□□□ -2.13
UBP11YKR098C MRP21P38175 177 aa1.77□□□□□ -2.13
UBP11YKR098C TCD1P38756 429 aa1.77□□□□□ -2.13
UBP11YKR098C KRE29P40026 464 aa1.77□□□□□ -2.13
UBP11YKR098C UFE1P41834 346 aa1.77□□□□□ -2.13
UBP11YKR098C HOC1P47124 396 aa1.77□□□□□ -2.13
UBP11YKR098C PRP24P49960 444 aaKnown RBP1.77□□□□□ -2.13
UBP11YKR098C NOP13P53883 403 aaKnown RBP RIP-Chip data1.77□□□□□ -2.13not detected
UBP11YKR098C RPL4AP10664 362 aaKnown RBP1.76□□□□□ -2.13
UBP11YKR098C COX10P21592 462 aa1.76□□□□□ -2.13
UBP11YKR098C DOA4P32571 926 aa1.76□□□□□ -2.13
UBP11YKR098C SEO1P39709 593 aa1.76□□□□□ -2.13
UBP11YKR098C YIL012WP40551 113 aa1.76□□□□□ -2.13
UBP11YKR098C JHD2P47156 728 aaPredicted RBP1.76□□□□□ -2.13
UBP11YKR098C RPL4BP49626 362 aaKnown RBP1.76□□□□□ -2.13
UBP11YKR098C HSH155P49955 971 aaKnown RBP1.76□□□□□ -2.13
UBP11YKR098C YGL118CP53132 145 aa1.76□□□□□ -2.13
UBP11YKR098C FMP41P53889 259 aaKnown RBP1.76□□□□□ -2.13
UBP11YKR098C YNL095CP53932 642 aa1.76□□□□□ -2.13
UBP11YKR098C MRS2Q01926 470 aa1.76□□□□□ -2.13
UBP11YKR098C ARC18Q05933 178 aaKnown RBP1.76□□□□□ -2.13
UBP11YKR098C PIN3Q06449 215 aa1.76□□□□□ -2.13
UBP11YKR098C DIB1Q06819 143 aaPredicted RBP1.76□□□□□ -2.13
UBP11YKR098C AI5_BETAQ9ZZX0 354 aa1.76□□□□□ -2.13
UBP11YKR098C FLO11P08640 1367 aa1.76□□□□□ -2.13
UBP11YKR098C YMR316C-AI2HB70 103 aa1.76□□□□□ -2.13
UBP11YKR098C VPS3P23643 1011 aa1.76□□□□□ -2.13
UBP11YKR098C JEN1P36035 616 aa1.76□□□□□ -2.13
UBP11YKR098C POP8P38208 133 aa1.76□□□□□ -2.13
UBP11YKR098C EDC2P40023 145 aaPredicted RBP1.76□□□□□ -2.13
UBP11YKR098C YIL054WP40524 105 aa1.76□□□□□ -2.13
UBP11YKR098C CTF19Q02732 369 aa1.76□□□□□ -2.13
UBP11YKR098C MCH1Q07376 486 aa1.76□□□□□ -2.13
UBP11YKR098C YDL144CQ07589 356 aa1.76□□□□□ -2.13
UBP11YKR098C YPL119C-AQ3E751 87 aa1.76□□□□□ -2.13
UBP11YKR098C RHO1P06780 209 aaKnown RBP1.75□□□□□ -2.13
UBP11YKR098C CAM1P29547 415 aaKnown RBP1.75□□□□□ -2.13
UBP11YKR098C CAT2P32796 670 aaKnown RBP1.75□□□□□ -2.13
UBP11YKR098C HEK2P38199 381 aaKnown RBP RIP-Chip data1.75□□□□□ -2.13 RIP-Chip
UBP11YKR098C YBR096WP38256 230 aa1.75□□□□□ -2.13
UBP11YKR098C MED8P38304 223 aa1.75□□□□□ -2.13
UBP11YKR098C ASP1P38986 381 aaPredicted RBP1.75□□□□□ -2.13
UBP11YKR098C YJR079WP47126 109 aa1.75□□□□□ -2.13
UBP11YKR098C USE1P53146 245 aa1.75□□□□□ -2.13
UBP11YKR098C PGA2P53903 129 aa1.75□□□□□ -2.13
UBP11YKR098C ASI3P53983 676 aa1.75□□□□□ -2.13
UBP11YKR098C SPO77Q06134 477 aa1.75□□□□□ -2.13
UBP11YKR098C GIS3Q12418 502 aa1.75□□□□□ -2.13
UBP11YKR098C PHO80P20052 293 aa1.75□□□□□ -2.13
UBP11YKR098C YHL049CP38722 271 aa1.75□□□□□ -2.13
UBP11YKR098C RPC17P47076 161 aa1.75□□□□□ -2.13
UBP11YKR098C UFD1P53044 361 aa1.75□□□□□ -2.13
UBP11YKR098C YGR067CP53243 804 aa1.75□□□□□ -2.13
UBP11YKR098C COQ10Q08058 207 aa1.75□□□□□ -2.13
UBP11YKR098C PLB3Q08108 686 aa1.75□□□□□ -2.13
UBP11YKR098C YCT1Q12235 531 aa1.75□□□□□ -2.13
UBP11YKR098C ADF1Q2V2Q1 113 aa1.75□□□□□ -2.13
UBP11YKR098C CCH1P50077 2039 aa1.74□□□□□ -2.13
UBP11YKR098C RPS19AP07280 144 aaKnown RBP1.74□□□□□ -2.13
UBP11YKR098C RPS19BP07281 144 aaPredicted RBP1.74□□□□□ -2.13
UBP11YKR098C OSM1P21375 501 aaKnown RBP1.74□□□□□ -2.13
UBP11YKR098C PPA2P28239 310 aa1.74□□□□□ -2.13
UBP11YKR098C BDH1P39714 382 aa1.74□□□□□ -2.13
UBP11YKR098C THO1P40040 218 aaKnown RBP1.74□□□□□ -2.13
UBP11YKR098C AVT6P40074 448 aa1.74□□□□□ -2.13
UBP11YKR098C COQ5P49017 307 aa1.74□□□□□ -2.13
UBP11YKR098C CAX4P53223 239 aa1.74□□□□□ -2.13
UBP11YKR098C YDL211CQ12121 372 aa1.74□□□□□ -2.13
UBP11YKR098C AUS1Q08409 1394 aa1.74□□□□□ -2.13
UBP11YKR098C SOD1P00445 154 aaKnown RBP1.74□□□□□ -2.13
UBP11YKR098C COS2P0CX12 379 aa1.74□□□□□ -2.13
UBP11YKR098C COS3P0CX13 379 aa1.74□□□□□ -2.13
UBP11YKR098C POX1P13711 748 aa1.74□□□□□ -2.13
UBP11YKR098C CKA2P19454 339 aa1.74□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 22.1 ms