RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE9	YDR393W	YDR524C-B	Q3E6R4	66 aa		1.5	□□□□□ -2.17
SHE9	YDR393W	IKI3	Q06706	1349 aa	Known RBP	1.5	□□□□□ -2.17
SHE9	YDR393W	UTP20	P35194	2493 aa	Known RBP	1.5	□□□□□ -2.17
SHE9	YDR393W	YOL163W	P0CF20	169 aa		1.49	□□□□□ -2.17
SHE9	YDR393W	RPL40A	P0CH08	128 aa	Known RBP	1.49	□□□□□ -2.17
SHE9	YDR393W	RPL40B	P0CH09	128 aa	Known RBP	1.49	□□□□□ -2.17
SHE9	YDR393W	GAL3	P13045	520 aa		1.49	□□□□□ -2.17
SHE9	YDR393W	IFM1	P25038	676 aa		1.49	□□□□□ -2.17
SHE9	YDR393W	SWI3	P32591	825 aa		1.49	□□□□□ -2.17
SHE9	YDR393W	UTP25	P40498	721 aa	Known RBP	1.49	□□□□□ -2.17
SHE9	YDR393W	SEC13	Q04491	297 aa	Known RBP	1.49	□□□□□ -2.17
SHE9	YDR393W	PEX30	Q06169	523 aa		1.49	□□□□□ -2.17
SHE9	YDR393W	SAM4	Q08985	325 aa	Known RBP	1.49	□□□□□ -2.17
SHE9	YDR393W	LAG2	Q92325	660 aa		1.49	□□□□□ -2.17
SHE9	YDR393W	GSC2	P40989	1895 aa		1.49	□□□□□ -2.17
SHE9	YDR393W	PRP8	P33334	2413 aa	Known RBP	1.49	□□□□□ -2.17
SHE9	YDR393W	PRE7	P23724	241 aa	Known RBP	1.48	□□□□□ -2.17
SHE9	YDR393W	GCG1	P32656	232 aa	Known RBP	1.48	□□□□□ -2.17
SHE9	YDR393W	BLI1	P35727	113 aa		1.48	□□□□□ -2.17
SHE9	YDR393W	YER084W	P40057	128 aa		1.48	□□□□□ -2.17
SHE9	YDR393W	YFL064C	P43540	174 aa		1.48	□□□□□ -2.17
SHE9	YDR393W	UFD1	P53044	361 aa		1.48	□□□□□ -2.17
SHE9	YDR393W	RSM27	P53305	110 aa		1.48	□□□□□ -2.17
SHE9	YDR393W	YLR446W	Q06204	433 aa		1.48	□□□□□ -2.17
SHE9	YDR393W	YPL278C	Q08990	100 aa		1.48	□□□□□ -2.17
SHE9	YDR393W	TY3A-G	Q12173	290 aa		1.48	□□□□□ -2.17
SHE9	YDR393W	PFK27	Q12471	397 aa	Predicted RBP	1.48	□□□□□ -2.17
SHE9	YDR393W	DCP1	Q12517	231 aa	Predicted RBP	1.48	□□□□□ -2.17
SHE9	YDR393W	TY3A-I	Q99219	290 aa		1.48	□□□□□ -2.17
SHE9	YDR393W	TUS1	Q06412	1307 aa		1.48	□□□□□ -2.17
SHE9	YDR393W	CDC13	P32797	924 aa	Known RBP	1.47	□□□□□ -2.17
SHE9	YDR393W	MCH2	P36032	473 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	INA22	P40576	216 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	LIF1	P53150	421 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	FLO1	P32768	1537 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	CDC42	P19073	191 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	IMP1	P28627	190 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	GPX1	P36014	167 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	CAB3	P36076	571 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	YHL044W	P38727	235 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	KRE29	P40026	464 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	NAS2	P40555	220 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	SYS1	P41544	203 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	PRP24	P49960	444 aa	Known RBP	1.47	□□□□□ -2.17
SHE9	YDR393W	OKP1	P53298	406 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	NNT1	Q05874	261 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	FEX1	Q08913	375 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	FEX2	Q08991	375 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	TIM22	Q12328	207 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	YPR1	Q12458	312 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	IZH4	Q99393	312 aa		1.47	□□□□□ -2.17
SHE9	YDR393W	SWI1	P09547	1314 aa		1.46	□□□□□ -2.18
SHE9	YDR393W	IRA2	P19158	3079 aa		1.46	□□□□□ -2.18
SHE9	YDR393W	RPL16B	P26785	198 aa	Known RBP	1.46	□□□□□ -2.18
SHE9	YDR393W	TPO5	P36029	618 aa		1.46	□□□□□ -2.18
SHE9	YDR393W	MRPL3	P36516	390 aa		1.46	□□□□□ -2.18
SHE9	YDR393W	END3	P39013	349 aa		1.46	□□□□□ -2.18
SHE9	YDR393W	YIL012W	P40551	113 aa		1.46	□□□□□ -2.18
SHE9	YDR393W	MIG2	P53035	382 aa		1.46	□□□□□ -2.18
SHE9	YDR393W	SWC4	P53201	476 aa		1.46	□□□□□ -2.18
SHE9	YDR393W	YGR266W	P53326	701 aa		1.46	□□□□□ -2.18
SHE9	YDR393W	PBP4	Q07362	185 aa	Known RBP	1.46	□□□□□ -2.18
SHE9	YDR393W	RRP42	Q12277	265 aa	Predicted RBP	1.46	□□□□□ -2.18
SHE9	YDR393W	SSK22	P25390	1331 aa	Predicted RBP	1.45	□□□□□ -2.18
SHE9	YDR393W	CDC37	P06101	506 aa	Known RBP	1.45	□□□□□ -2.18
SHE9	YDR393W	VMA2	P16140	517 aa	Known RBP	1.45	□□□□□ -2.18
SHE9	YDR393W	YKL162C	P36052	402 aa		1.45	□□□□□ -2.18
SHE9	YDR393W	VAB2	P40003	282 aa		1.45	□□□□□ -2.18
SHE9	YDR393W	YER188W	P40103	239 aa		1.45	□□□□□ -2.18
SHE9	YDR393W	YFH7	P43591	353 aa		1.45	□□□□□ -2.18
SHE9	YDR393W	SYF2	P53277	215 aa	Predicted RBP	1.45	□□□□□ -2.18
SHE9	YDR393W	YNL095C	P53932	642 aa		1.45	□□□□□ -2.18
SHE9	YDR393W	OSH6	Q02201	448 aa		1.45	□□□□□ -2.18
SHE9	YDR393W	CAB5	Q03941	241 aa		1.45	□□□□□ -2.18
SHE9	YDR393W	STE23	Q06010	1027 aa		1.45	□□□□□ -2.18
SHE9	YDR393W	PRR2	Q12310	699 aa		1.45	□□□□□ -2.18
SHE9	YDR393W	PHO80	P20052	293 aa		1.44	□□□□□ -2.18
SHE9	YDR393W	RRT12	P25381	491 aa		1.44	□□□□□ -2.18
SHE9	YDR393W	IMP3	P32899	183 aa	Predicted RBP	1.44	□□□□□ -2.18
SHE9	YDR393W	YBR062C	P38239	180 aa		1.44	□□□□□ -2.18
SHE9	YDR393W	MBA1	P38300	278 aa		1.44	□□□□□ -2.18
SHE9	YDR393W	TVP23	P38962	199 aa		1.44	□□□□□ -2.18
SHE9	YDR393W	FET3	P38993	636 aa		1.44	□□□□□ -2.18
SHE9	YDR393W	CAJ1	P39101	391 aa		1.44	□□□□□ -2.18
SHE9	YDR393W	AVT6	P40074	448 aa		1.44	□□□□□ -2.18
SHE9	YDR393W	AIM20	P40451	204 aa		1.44	□□□□□ -2.18
SHE9	YDR393W	UBC13	P52490	153 aa		1.44	□□□□□ -2.18
SHE9	YDR393W	ALG9	P53868	555 aa	Known RBP	1.44	□□□□□ -2.18
SHE9	YDR393W	PAA1	Q12447	191 aa	Known RBP	1.44	□□□□□ -2.18
SHE9	YDR393W	YAL063C-A	Q3E791	96 aa		1.44	□□□□□ -2.18
SHE9	YDR393W	HKR1	P41809	1802 aa		1.43	□□□□□ -2.18
SHE9	YDR393W	PET18	P25362	215 aa		1.43	□□□□□ -2.18
SHE9	YDR393W	TRM7	P38238	310 aa	Known RBP	1.43	□□□□□ -2.18
SHE9	YDR393W	YPC1	P38298	316 aa		1.43	□□□□□ -2.18
SHE9	YDR393W	SWC5	P38326	303 aa		1.43	□□□□□ -2.18
SHE9	YDR393W	RTR1	P40084	226 aa	Predicted RBP	1.43	□□□□□ -2.18
SHE9	YDR393W	COX16	P47081	118 aa		1.43	□□□□□ -2.18
SHE9	YDR393W	INM2	Q05533	292 aa		1.43	□□□□□ -2.18
SHE9	YDR393W	YLR297W	Q05899	129 aa		1.43	□□□□□ -2.18
SHE9	YDR393W	YDL144C	Q07589	356 aa		1.43	□□□□□ -2.18

Retrieved 100 of 5,963 RNA–protein pairs in 88 ms